Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47209 * 240.00201 * 3 2 1 5 5 H 1.48502 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00393 * 3 2 1 7 7 C 1.38811 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 170.32920 * 7 2 1 9 9 N 1.36942 * 120.00091 * 350.32957 * 7 2 1 10 10 C 1.47763 * 121.64441 * 149.62885 * 9 7 2 11 11 C 1.52987 * 108.82604 * 83.02776 * 10 9 7 12 12 N 1.47110 * 109.17484 * 57.74741 * 11 10 9 13 13 C 1.35512 * 118.11108 * 259.44191 * 12 11 10 14 14 O 1.21285 * 120.23470 * 359.89742 * 13 12 11 15 15 C 1.50702 * 119.52398 * 179.97438 * 13 12 11 16 16 C 1.53608 * 109.49550 * 245.65597 * 15 13 12 17 17 N 1.47755 * 108.47742 * 55.01753 * 16 15 13 18 18 C 1.34770 * 121.64996 * 87.79817 * 17 16 15 19 19 O 1.21607 * 120.00033 * 183.76128 * 18 17 16 20 20 C 1.47451 * 120.00254 * 3.76753 * 18 17 16 21 21 C 1.37980 * 124.15593 * 174.00540 * 20 18 17 22 22 S 1.72097 * 104.03341 * 180.02562 * 21 20 18 23 23 N 1.56399 * 96.15505 * 0.02562 * 22 21 20 24 24 N 1.27413 * 109.87916 * 359.97438 * 23 22 21 25 25 C 1.47760 * 116.69303 * 267.53085 * 17 16 15 26 26 C 1.47732 * 121.64608 * 329.64858 * 9 7 2 27 27 H 0.97002 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.57807 * 202.83079 * 10 9 7 29 29 H 1.09003 * 109.58083 * 323.09009 * 10 9 7 30 30 H 1.08997 * 109.52178 * 177.65760 * 11 10 9 31 31 H 1.09004 * 109.51961 * 297.77678 * 11 10 9 32 32 H 0.97000 * 120.94413 * 79.40936 * 12 11 10 33 33 H 1.08997 * 109.47248 * 5.70297 * 15 13 12 34 34 H 1.08993 * 109.47662 * 125.72727 * 15 13 12 35 35 H 1.08998 * 109.60626 * 295.40748 * 16 15 13 36 36 H 1.08995 * 109.87315 * 174.79298 * 16 15 13 37 37 H 1.08002 * 127.98042 * 0.07585 * 21 20 18 38 38 H 1.08996 * 109.58853 * 250.11200 * 25 17 16 39 39 H 1.09000 * 109.59006 * 10.53262 * 25 17 16 40 40 H 1.09000 * 109.58362 * 194.85412 * 26 9 7 41 41 H 1.09004 * 109.58061 * 74.45298 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0788 -1.2088 -0.1577 9 7 1.3401 -2.3798 0.1982 10 6 1.8014 -3.6460 -0.4078 11 6 2.8956 -4.2467 0.4767 12 7 2.3625 -4.4526 1.8323 13 6 2.6740 -3.5417 2.7860 14 8 3.3751 -2.5897 2.5156 15 6 2.1444 -3.7211 4.1855 16 6 1.1673 -2.5822 4.5138 17 7 0.1184 -2.5505 3.4736 18 6 -1.0009 -3.2942 3.5752 19 8 -1.8129 -3.2976 2.6699 20 6 -1.2412 -4.1035 4.7841 21 6 -2.4063 -4.8003 5.0309 22 16 -2.1313 -5.5458 6.5574 23 7 -0.6892 -4.9769 6.7645 24 7 -0.3630 -4.2506 5.7698 25 6 0.3548 -1.6586 2.3195 26 6 0.1200 -2.4467 1.0285 27 1 -0.4850 0.8401 0.0004 28 1 0.9659 -4.3426 -0.4790 29 1 2.1999 -3.4507 -1.4034 30 1 3.2152 -5.2027 0.0620 31 1 3.7454 -3.5653 0.5181 32 1 1.8034 -5.2183 2.0374 33 1 1.6261 -4.6772 4.2581 34 1 2.9733 -3.7022 4.8929 35 1 1.7022 -1.6325 4.5221 36 1 0.7105 -2.7552 5.4881 37 1 -3.2871 -4.8639 4.4092 38 1 -0.3336 -0.8147 2.3628 39 1 1.3825 -1.2960 2.3424 40 1 -0.0997 -3.4862 1.2719 41 1 -0.7177 -2.0125 0.4827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070982709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = 62.784569 kcal Electronic energy + Delta-G solvation = -29633.085054 eV Core-core repulsion = 25678.110339 eV Total energy + Delta-G solvation = -3954.974715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25632 -39.51538 -38.50407 -35.84162 -35.43400 -33.68643 -32.22366 -31.28809 -30.35945 -29.22319 -27.38352 -26.52820 -24.88366 -23.54911 -23.18504 -21.63060 -20.38153 -20.16890 -19.69279 -18.11172 -16.63703 -16.62530 -16.44262 -16.27558 -15.60356 -15.40341 -14.99145 -14.82983 -14.47657 -14.00811 -13.67424 -13.40401 -13.30247 -13.14551 -12.80917 -12.66718 -12.29367 -12.23633 -12.04489 -11.63686 -11.44946 -11.16759 -11.06563 -10.73753 -10.48353 -10.33380 -10.25320 -10.18115 -10.02950 -9.97465 -9.88020 -9.63007 -9.42473 -9.02699 -8.66131 -8.27579 -8.09431 -6.45532 -5.55395 -3.11180 -0.09436 0.76015 1.36615 1.42898 3.24567 3.33907 3.41361 3.48412 3.52541 3.56959 3.78442 3.94557 4.57624 4.61747 4.72662 5.12765 5.22645 5.32545 5.49976 5.53006 5.59515 5.81261 5.97182 6.07808 6.14337 6.19001 6.25942 6.51077 6.59773 6.64382 6.80839 6.91151 7.01397 7.20521 7.34453 7.50851 7.73134 7.97432 8.07941 8.16345 8.40113 8.55684 8.99480 9.34678 9.93773 10.56367 11.43559 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.004473 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.154363 B = 6258.715003 C = 6737.713780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.062 0.938 9 N -0.587 5.587 10 C 0.127 3.873 11 C 0.088 3.912 12 N -0.724 5.724 13 C 0.518 3.482 14 O -0.518 6.518 15 C -0.146 4.146 16 C 0.108 3.892 17 N -0.592 5.592 18 C 0.591 3.409 19 O -0.517 6.517 20 C -0.012 4.012 21 C -0.237 4.237 22 S 0.443 5.557 23 N -0.296 5.296 24 N -0.207 5.207 25 C 0.113 3.887 26 C 0.173 3.827 27 H 0.251 0.749 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.389 0.611 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.207 0.793 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.027 0.973 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -14.120 13.146 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.310 5.310 10 C -0.001 4.001 11 C -0.038 4.038 12 N -0.376 5.376 13 C 0.303 3.697 14 O -0.393 6.393 15 C -0.187 4.187 16 C -0.017 4.017 17 N -0.325 5.325 18 C 0.373 3.627 19 O -0.392 6.392 20 C -0.159 4.159 21 C -0.394 4.394 22 S 0.579 5.421 23 N -0.276 5.276 24 N -0.078 5.078 25 C -0.007 4.007 26 C 0.048 3.952 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.222 0.778 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.224 0.776 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.359 -13.833 14.076 20.019 hybrid contribution -0.194 1.183 -1.174 1.678 sum -3.553 -12.650 12.902 18.415 Atomic orbital electron populations 1.69986 1.04930 1.25050 1.54894 1.25099 0.95258 0.97838 1.01490 0.86451 0.78878 0.83818 0.78183 1.21075 1.21895 1.21052 1.18867 0.90471 0.83338 1.42685 0.92003 1.44477 1.29501 1.02913 1.54155 1.21449 0.94778 0.89062 0.94797 1.22294 0.99677 0.99349 0.82526 1.46043 1.53714 1.27140 1.10657 1.20456 0.80395 0.82314 0.86490 1.90731 1.37582 1.28991 1.81980 1.22125 1.00559 1.00644 0.95401 1.22297 0.88457 0.98397 0.92518 1.49058 1.17307 1.42340 1.23749 1.16619 0.82505 0.79828 0.83769 1.90873 1.45527 1.64625 1.38168 1.23109 0.91278 1.03379 0.98146 1.28867 1.04314 1.02056 1.04176 1.81446 1.12869 1.39037 1.08784 1.78728 1.12254 1.14770 1.21855 1.71787 1.27044 1.11473 0.97464 1.22854 1.03724 0.91031 0.83109 1.21245 0.90453 0.94454 0.89081 0.93882 0.94310 0.92997 0.92998 0.89637 0.77834 0.91009 0.88309 0.89613 0.87155 0.77584 0.91814 0.87474 0.95473 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 10.04 55.49 0.56 -25.46 16 2 C 0.00 0.03 4.51 -17.43 -0.08 -0.05 16 3 Si 0.90 22.48 29.56 -169.99 -5.03 17.45 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.22 -6.09 8.36 -15.06 -0.13 -6.22 16 8 H 0.06 1.75 7.85 -52.48 -0.41 1.33 16 9 N -0.59 -14.39 2.27 -171.18 -0.39 -14.78 16 10 C 0.13 2.58 6.09 -3.36 -0.02 2.56 16 11 C 0.09 1.54 6.57 -3.72 -0.02 1.51 16 12 N -0.72 -11.97 4.70 -59.69 -0.28 -12.25 16 13 C 0.52 9.45 4.75 -10.65 -0.05 9.40 16 14 O -0.52 -11.71 15.09 5.55 0.08 -11.63 16 15 C -0.15 -2.14 5.95 -27.57 -0.16 -2.30 16 16 C 0.11 1.69 5.27 -3.04 -0.02 1.68 16 17 N -0.59 -10.92 2.42 -172.50 -0.42 -11.34 16 18 C 0.59 10.44 7.12 -12.51 -0.09 10.35 16 19 O -0.52 -10.66 14.98 5.27 0.08 -10.58 16 20 C -0.01 -0.17 6.68 -83.78 -0.56 -0.73 16 21 C -0.24 -2.38 11.21 30.64 0.34 -2.03 16 22 S 0.44 3.33 23.38 -107.50 -2.51 0.82 16 23 N -0.30 -3.30 12.49 60.35 0.75 -2.54 16 24 N -0.21 -2.66 7.15 32.74 0.23 -2.43 16 25 C 0.11 2.60 3.90 -3.32 -0.01 2.58 16 26 C 0.17 4.18 3.59 -3.33 -0.01 4.17 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.74 7.76 -51.92 -0.40 0.34 16 29 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.74 7.01 -51.93 -0.36 1.38 16 32 H 0.39 5.50 8.71 -40.82 -0.36 5.14 16 33 H 0.07 0.96 7.27 -51.93 -0.38 0.58 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 36 H 0.11 1.57 5.14 -51.93 -0.27 1.30 16 37 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.06 1.62 7.62 -51.93 -0.40 1.23 16 39 H 0.11 2.73 4.68 -51.93 -0.24 2.49 16 40 H 0.03 0.63 5.79 -51.93 -0.30 0.32 16 41 H 0.07 1.88 6.69 -51.93 -0.35 1.53 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -33.30 334.50 -7.38 -40.68 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.70 Total: 6.10 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: -0.81 Total: 20.92 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.46 Total: -68.80 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.51 Total: 0.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.30 -7.38 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070982709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.465 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds