Wall clock time and date at job start Tue Mar 31 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48507 * 109.47209 * 240.00201 * 3 2 1 5 5 H 1.48502 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47113 * 120.00393 * 3 2 1 7 7 C 1.38811 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 170.32920 * 7 2 1 9 9 N 1.36942 * 120.00091 * 350.32957 * 7 2 1 10 10 C 1.47763 * 121.64441 * 149.62885 * 9 7 2 11 11 C 1.52987 * 108.82604 * 83.02776 * 10 9 7 12 12 N 1.47110 * 109.17484 * 57.74741 * 11 10 9 13 13 C 1.35512 * 118.11108 * 259.44191 * 12 11 10 14 14 O 1.21285 * 120.23470 * 359.89742 * 13 12 11 15 15 C 1.50702 * 119.52398 * 179.97438 * 13 12 11 16 16 C 1.53608 * 109.49550 * 245.65597 * 15 13 12 17 17 N 1.47755 * 108.47742 * 55.01753 * 16 15 13 18 18 C 1.34770 * 121.64996 * 87.79817 * 17 16 15 19 19 O 1.21607 * 120.00033 * 183.76128 * 18 17 16 20 20 C 1.47451 * 120.00254 * 3.76753 * 18 17 16 21 21 C 1.37980 * 124.15593 * 174.00540 * 20 18 17 22 22 S 1.72097 * 104.03341 * 180.02562 * 21 20 18 23 23 N 1.56399 * 96.15505 * 0.02562 * 22 21 20 24 24 N 1.27413 * 109.87916 * 359.97438 * 23 22 21 25 25 C 1.47760 * 116.69303 * 267.53085 * 17 16 15 26 26 C 1.47732 * 121.64608 * 329.64858 * 9 7 2 27 27 H 0.97002 * 119.99793 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.57807 * 202.83079 * 10 9 7 29 29 H 1.09003 * 109.58083 * 323.09009 * 10 9 7 30 30 H 1.08997 * 109.52178 * 177.65760 * 11 10 9 31 31 H 1.09004 * 109.51961 * 297.77678 * 11 10 9 32 32 H 0.97000 * 120.94413 * 79.40936 * 12 11 10 33 33 H 1.08997 * 109.47248 * 5.70297 * 15 13 12 34 34 H 1.08993 * 109.47662 * 125.72727 * 15 13 12 35 35 H 1.08998 * 109.60626 * 295.40748 * 16 15 13 36 36 H 1.08995 * 109.87315 * 174.79298 * 16 15 13 37 37 H 1.08002 * 127.98042 * 0.07585 * 21 20 18 38 38 H 1.08996 * 109.58853 * 250.11200 * 25 17 16 39 39 H 1.09000 * 109.59006 * 10.53262 * 25 17 16 40 40 H 1.09000 * 109.58362 * 194.85412 * 26 9 7 41 41 H 1.09004 * 109.58061 * 74.45298 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0788 -1.2088 -0.1577 9 7 1.3401 -2.3798 0.1982 10 6 1.8014 -3.6460 -0.4078 11 6 2.8956 -4.2467 0.4767 12 7 2.3625 -4.4526 1.8323 13 6 2.6740 -3.5417 2.7860 14 8 3.3751 -2.5897 2.5156 15 6 2.1444 -3.7211 4.1855 16 6 1.1673 -2.5822 4.5138 17 7 0.1184 -2.5505 3.4736 18 6 -1.0009 -3.2942 3.5752 19 8 -1.8129 -3.2976 2.6699 20 6 -1.2412 -4.1035 4.7841 21 6 -2.4063 -4.8003 5.0309 22 16 -2.1313 -5.5458 6.5574 23 7 -0.6892 -4.9769 6.7645 24 7 -0.3630 -4.2506 5.7698 25 6 0.3548 -1.6586 2.3195 26 6 0.1200 -2.4467 1.0285 27 1 -0.4850 0.8401 0.0004 28 1 0.9659 -4.3426 -0.4790 29 1 2.1999 -3.4507 -1.4034 30 1 3.2152 -5.2027 0.0620 31 1 3.7454 -3.5653 0.5181 32 1 1.8034 -5.2183 2.0374 33 1 1.6261 -4.6772 4.2581 34 1 2.9733 -3.7022 4.8929 35 1 1.7022 -1.6325 4.5221 36 1 0.7105 -2.7552 5.4881 37 1 -3.2871 -4.8639 4.4092 38 1 -0.3336 -0.8147 2.3628 39 1 1.3825 -1.2960 2.3424 40 1 -0.0997 -3.4862 1.2719 41 1 -0.7177 -2.0125 0.4827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070982709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:52 Heat of formation + Delta-G solvation = 37.611895 kcal Electronic energy + Delta-G solvation = -29634.176623 eV Core-core repulsion = 25678.110339 eV Total energy + Delta-G solvation = -3956.066284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.26603 -40.90119 -39.93583 -37.67066 -36.89396 -35.32031 -33.28864 -33.08880 -31.89699 -30.84227 -28.63795 -27.97192 -26.55366 -25.08885 -24.58886 -22.98650 -22.00370 -21.42576 -21.15025 -19.38335 -18.40685 -17.95539 -17.81890 -17.48839 -16.90989 -16.73479 -16.41538 -16.25825 -16.17863 -15.49541 -15.32156 -15.08572 -14.77502 -14.69476 -14.26251 -14.10317 -13.82175 -13.39757 -13.26536 -13.09075 -12.97815 -12.87662 -12.72557 -12.52879 -12.31738 -12.07050 -11.87682 -11.80974 -11.61072 -11.08840 -11.05905 -11.01695 -10.82638 -10.67070 -10.47858 -9.91653 -9.66554 -8.48636 -7.67731 -5.25773 -0.87104 0.00556 0.38543 0.60610 1.43334 1.45942 1.52282 1.85427 2.00318 2.07384 2.53562 2.60667 2.76135 3.39033 3.58461 3.70595 3.73349 3.97554 4.09275 4.30165 4.37750 4.43687 4.51879 4.58431 4.69011 4.72479 4.82786 4.83193 4.89799 5.02777 5.06447 5.18658 5.29832 5.63547 5.74778 5.78078 5.86506 6.35775 6.44775 6.53476 6.82465 7.02465 7.23976 7.60740 7.89850 8.48298 9.27228 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.004473 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.154363 B = 6258.715003 C = 6737.713780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.043 4.043 3 Si 0.946 3.054 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.217 4.217 8 H 0.049 0.951 9 N -0.600 5.600 10 C 0.121 3.879 11 C 0.100 3.900 12 N -0.715 5.715 13 C 0.511 3.489 14 O -0.567 6.567 15 C -0.133 4.133 16 C 0.111 3.889 17 N -0.597 5.597 18 C 0.593 3.407 19 O -0.555 6.555 20 C -0.038 4.038 21 C -0.240 4.240 22 S 0.571 5.429 23 N -0.327 5.327 24 N -0.224 5.224 25 C 0.139 3.861 26 C 0.195 3.805 27 H 0.244 0.756 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.405 0.595 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.222 0.778 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -17.159 15.458 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.348 4.348 8 H 0.067 0.933 9 N -0.324 5.324 10 C -0.006 4.006 11 C -0.026 4.026 12 N -0.368 5.368 13 C 0.299 3.701 14 O -0.445 6.445 15 C -0.175 4.175 16 C -0.012 4.012 17 N -0.329 5.329 18 C 0.378 3.622 19 O -0.433 6.433 20 C -0.185 4.185 21 C -0.397 4.397 22 S 0.706 5.294 23 N -0.308 5.308 24 N -0.093 5.093 25 C 0.017 3.983 26 C 0.069 3.931 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.111 0.889 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.778 -16.941 16.410 23.887 hybrid contribution -0.186 1.930 -1.777 2.630 sum -3.964 -15.012 14.633 21.335 Atomic orbital electron populations 1.70151 1.05864 1.24854 1.56446 1.25603 0.95815 1.00136 1.02234 0.85666 0.77771 0.81096 0.77924 1.20379 1.22018 1.21606 1.18866 0.89965 0.84598 1.41368 0.93295 1.44626 1.29224 1.03778 1.54752 1.21672 0.96096 0.87613 0.95170 1.22050 0.97295 1.00709 0.82573 1.46003 1.53423 1.27281 1.10044 1.21103 0.79525 0.81537 0.87965 1.90715 1.39820 1.30988 1.83009 1.22081 1.00987 1.00976 0.93418 1.22415 0.87945 0.98194 0.92638 1.48920 1.18802 1.42105 1.23088 1.17042 0.81198 0.79275 0.84693 1.90848 1.46436 1.65955 1.40078 1.22427 0.93354 1.05137 0.97569 1.29213 1.03606 1.00886 1.05965 1.81088 1.08794 1.34753 1.04731 1.78359 1.15337 1.15428 1.21635 1.71750 1.27483 1.12504 0.97565 1.22119 1.00822 0.90708 0.84689 1.20836 0.88842 0.94463 0.88937 0.94692 0.92923 0.93236 0.88350 0.92550 0.75991 0.88949 0.86018 0.91283 0.84884 0.76140 0.95453 0.89988 0.94363 0.96460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 10.04 21.65 0.22 -55.77 16 2 C -0.04 -2.46 4.51 84.86 0.38 -2.07 16 3 Si 0.95 47.87 29.56 68.60 2.03 49.90 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 6 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 7 C -0.22 -12.25 8.36 84.03 0.70 -11.55 16 8 H 0.05 2.87 7.85 -2.91 -0.02 2.85 16 9 N -0.60 -30.27 2.27 -695.48 -1.58 -31.85 16 10 C 0.12 4.88 6.09 86.13 0.52 5.41 16 11 C 0.10 3.38 6.57 86.26 0.57 3.95 16 12 N -0.72 -22.62 4.70 -460.73 -2.16 -24.78 16 13 C 0.51 18.38 4.75 87.54 0.42 18.79 16 14 O -0.57 -26.11 15.09 -3.05 -0.05 -26.16 16 15 C -0.13 -3.70 5.95 30.05 0.18 -3.52 16 16 C 0.11 3.46 5.27 86.34 0.45 3.91 16 17 N -0.60 -22.42 2.42 -817.92 -1.98 -24.40 16 18 C 0.59 20.89 7.12 86.67 0.62 21.51 16 19 O -0.56 -23.34 14.98 -4.05 -0.06 -23.41 16 20 C -0.04 -0.95 6.68 41.36 0.28 -0.68 16 21 C -0.24 -4.03 11.21 67.76 0.76 -3.27 16 22 S 0.57 5.90 23.38 -56.49 -1.32 4.58 16 23 N -0.33 -6.03 12.49 37.02 0.46 -5.57 16 24 N -0.22 -5.13 7.15 -50.34 -0.36 -5.49 16 25 C 0.14 6.72 3.90 86.16 0.34 7.06 16 26 C 0.19 9.80 3.59 86.16 0.31 10.11 16 27 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.05 1.97 7.76 -2.38 -0.02 1.95 16 29 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.29 7.01 -2.38 -0.02 2.27 16 32 H 0.40 10.37 8.71 -92.71 -0.81 9.56 16 33 H 0.09 2.20 7.27 -2.39 -0.02 2.18 16 34 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.07 2.36 7.81 -2.39 -0.02 2.34 16 36 H 0.13 3.60 5.14 -2.39 -0.01 3.59 16 37 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.03 1.49 7.62 -2.39 -0.02 1.47 16 39 H 0.08 4.40 4.68 -2.39 -0.01 4.39 16 40 H 0.04 1.80 5.79 -2.39 -0.01 1.79 16 41 H 0.02 1.05 6.69 -2.39 -0.02 1.04 16 Total: -1.00 -77.99 334.50 1.02 -76.97 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.30 Total: 16.34 kcal Atomic # 6 Polarization: 44.12 SS G_CDS: 5.52 Total: 49.64 kcal Atomic # 7 Polarization: -142.46 SS G_CDS: -5.40 Total: -147.86 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.11 Total: -49.56 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.32 Total: 4.58 kcal Total: -77.99 1.02 -76.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070982709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.586 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds