Wall clock time and date at job start Tue Mar 31 2020 22:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86810 * 119.99738 * 2 1 4 4 H 1.48501 * 109.46719 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46906 * 299.99928 * 3 2 1 6 6 H 1.48501 * 109.46912 * 60.00077 * 3 2 1 7 7 C 1.38796 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99586 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00172 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47029 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00358 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00218 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00208 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.52827 * 325.07968 * 14 13 11 16 16 C 1.53039 * 109.49824 * 205.00216 * 14 13 11 17 17 C 1.53044 * 109.53044 * 178.67671 * 16 14 13 18 18 C 1.53196 * 109.31105 * 61.37118 * 17 16 14 19 19 N 1.46930 * 108.77694 * 305.36890 * 18 17 16 20 20 C 1.34772 * 120.62812 * 233.63383 * 19 18 17 21 21 O 1.21558 * 119.99853 * 172.78686 * 20 19 18 22 22 C 1.47869 * 120.00154 * 352.78346 * 20 19 18 23 23 N 1.34544 * 126.04935 * 351.83236 * 22 20 19 24 24 C 1.30871 * 107.27132 * 179.89747 * 23 22 20 25 25 N 1.34586 * 107.62333 * 0.35785 * 24 23 22 26 26 H 0.97001 * 125.74735 * 179.73172 * 25 24 23 27 27 N 1.28847 * 108.50137 * 359.77555 * 25 24 23 28 28 C 1.46925 * 118.73962 * 53.60272 * 19 18 17 29 29 H 0.96997 * 120.00197 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47027 * 60.00390 * 10 9 7 31 31 H 1.08998 * 109.47148 * 299.99925 * 10 9 7 32 32 H 0.97000 * 119.99687 * 359.97438 * 13 11 10 33 33 H 1.09001 * 109.46363 * 58.66127 * 16 14 13 34 34 H 1.09006 * 109.46321 * 298.69183 * 16 14 13 35 35 H 1.08994 * 109.49849 * 181.31908 * 17 16 14 36 36 H 1.09000 * 109.49847 * 301.38867 * 17 16 14 37 37 H 1.09001 * 109.58625 * 65.15087 * 18 17 16 38 38 H 1.08996 * 109.58932 * 185.58082 * 18 17 16 39 39 H 1.08002 * 126.19033 * 180.13102 * 24 23 22 40 40 H 1.09009 * 109.58353 * 66.18297 * 28 19 18 41 41 H 1.08998 * 109.58890 * 186.60686 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8913 0.0013 11 6 1.9876 -5.3026 0.0030 12 8 0.7912 -5.5023 0.0040 13 7 2.8443 -6.3430 0.0024 14 6 2.3306 -7.7150 0.0035 15 1 1.4146 -7.7606 0.5926 16 6 3.3766 -8.6516 0.6123 17 6 2.8277 -10.0799 0.6441 18 6 2.5384 -10.5433 -0.7871 19 7 1.6463 -9.5681 -1.4289 20 6 0.4922 -9.9654 -2.0003 21 8 -0.2987 -9.1388 -2.4111 22 6 0.1881 -11.4069 -2.1277 23 7 1.0313 -12.4206 -1.8604 24 6 0.3862 -13.5348 -2.0950 25 7 -0.8506 -13.2091 -2.5140 26 1 -1.5476 -13.8356 -2.7641 27 7 -0.9526 -11.9247 -2.5278 28 6 2.0359 -8.1514 -1.4351 29 1 -0.4850 0.8400 0.0004 30 1 3.1252 -3.7309 0.8908 31 1 3.1239 -3.7317 -0.8892 32 1 3.8011 -6.1834 0.0005 33 1 3.6065 -8.3283 1.6276 34 1 4.2837 -8.6245 0.0085 35 1 3.5638 -10.7425 1.0992 36 1 1.9073 -10.1031 1.2275 37 1 3.4719 -10.6076 -1.3462 38 1 2.0557 -11.5203 -0.7644 39 1 0.7769 -14.5348 -1.9775 40 1 2.9285 -8.0207 -2.0470 41 1 1.2217 -7.5503 -1.8398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071096011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:25 Heat of formation + Delta-G solvation = 32.680105 kcal Electronic energy + Delta-G solvation = -26344.065357 eV Core-core repulsion = 22387.785214 eV Total energy + Delta-G solvation = -3956.280142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.96108 -40.36200 -39.05407 -37.36895 -34.75737 -33.83109 -32.43037 -32.37796 -31.86295 -30.58129 -28.38293 -26.43273 -25.44437 -24.13987 -23.53047 -22.98713 -21.15028 -20.27909 -19.87934 -18.84675 -17.79251 -17.21646 -16.85396 -16.56999 -16.24946 -15.97964 -15.49521 -15.01377 -14.76631 -14.69700 -14.50813 -14.15941 -13.93382 -13.52848 -13.25189 -13.09499 -12.95935 -12.67811 -12.41019 -12.09337 -11.68905 -11.51861 -11.25312 -11.19177 -11.03596 -10.97194 -10.78969 -10.69210 -10.49843 -10.20892 -10.12829 -9.75839 -9.35719 -9.18089 -9.02841 -8.60699 -8.16749 -6.44408 -6.16995 -3.87151 1.00483 1.61749 2.05052 2.61979 3.06149 3.10422 3.16168 3.24920 3.31775 3.36655 3.59029 3.76963 4.11096 4.24522 4.28730 4.56955 4.68213 4.76129 4.92229 5.12611 5.17981 5.23420 5.26580 5.29540 5.47523 5.56628 5.59237 5.68132 5.73408 5.81881 5.92965 5.96390 6.03651 6.11959 6.16537 6.18913 6.38946 6.69470 7.09676 7.48540 7.64244 7.74786 7.95006 8.39927 8.66945 9.28175 10.90437 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025552 B = 0.002119 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.540630 B =13209.486002 C =14039.540334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.509 6.509 13 N -0.733 5.733 14 C 0.136 3.864 15 H 0.092 0.908 16 C -0.128 4.128 17 C -0.130 4.130 18 C 0.079 3.921 19 N -0.590 5.590 20 C 0.610 3.390 21 O -0.505 6.505 22 C 0.157 3.843 23 N -0.483 5.483 24 C 0.197 3.803 25 N -0.400 5.400 26 H 0.454 0.546 27 N -0.245 5.245 28 C 0.102 3.898 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.399 0.601 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.136 0.864 39 H 0.231 0.769 40 H 0.073 0.927 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 -33.062 -1.839 34.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.382 6.382 13 N -0.388 5.388 14 C 0.029 3.971 15 H 0.110 0.890 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.043 4.043 19 N -0.324 5.324 20 C 0.392 3.608 21 O -0.376 6.376 22 C -0.124 4.124 23 N -0.210 5.210 24 C -0.100 4.100 25 N -0.122 5.122 26 H 0.300 0.700 27 N -0.084 5.084 28 C -0.021 4.021 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.153 0.847 39 H 0.247 0.753 40 H 0.091 0.909 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.500 -32.259 -2.110 32.792 hybrid contribution 2.194 0.566 -0.122 2.270 sum 7.695 -31.692 -2.232 32.689 Atomic orbital electron populations 1.70033 1.05939 1.27306 1.46959 1.25002 0.95026 0.99033 0.94621 0.86117 0.79565 0.81937 0.77863 1.19633 1.20593 1.20606 1.22909 0.94934 0.91691 1.58750 0.90886 1.85469 1.04853 0.96282 1.96690 1.23524 1.06574 0.95310 1.04921 1.20385 0.86633 0.86316 0.75037 1.90745 1.15266 1.85432 1.46801 1.45988 1.09943 1.04826 1.78040 1.21143 0.98603 0.81402 0.95915 0.88954 1.21844 0.98163 0.94789 1.01841 1.21897 1.01881 0.95965 0.97174 1.22656 0.94880 0.94774 0.92037 1.47669 1.20298 1.08611 1.55832 1.16356 0.81731 0.83628 0.79040 1.90913 1.46543 1.51905 1.48192 1.23828 0.87729 0.96016 1.04823 1.71118 1.30630 0.97410 1.21888 1.26770 0.83571 1.01063 0.98593 1.45267 1.14434 1.05330 1.47199 0.69956 1.74438 1.23621 0.91755 1.18624 1.22142 1.02180 0.80321 0.97490 0.92258 0.89226 0.89168 0.76679 0.90764 0.91093 0.90083 0.91363 0.91377 0.84693 0.75280 0.90893 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.69 13.22 55.49 0.73 -25.95 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 10.14 7.82 -10.99 -0.09 10.06 16 12 O -0.51 -12.09 15.53 5.55 0.09 -12.00 16 13 N -0.73 -9.87 5.08 -53.69 -0.27 -10.14 16 14 C 0.14 1.70 2.60 -67.81 -0.18 1.52 16 15 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 16 C -0.13 -1.07 5.35 -26.69 -0.14 -1.21 16 17 C -0.13 -0.98 6.08 -26.61 -0.16 -1.14 16 18 C 0.08 0.67 6.08 -3.71 -0.02 0.65 16 19 N -0.59 -7.23 2.97 -173.86 -0.52 -7.75 16 20 C 0.61 9.04 7.69 -12.32 -0.09 8.95 16 21 O -0.50 -9.72 16.51 5.31 0.09 -9.63 16 22 C 0.16 1.85 7.63 -156.36 -1.19 0.66 16 23 N -0.48 -3.91 7.89 -12.36 -0.10 -4.01 16 24 C 0.20 0.75 13.14 -90.48 -1.19 -0.44 16 25 N -0.40 -1.94 6.93 29.57 0.20 -1.73 16 26 H 0.45 0.20 8.96 -190.21 -1.71 -1.50 16 27 N -0.25 -2.67 12.31 32.07 0.39 -2.28 16 28 C 0.10 1.36 6.02 -3.71 -0.02 1.34 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.14 1.13 4.17 -58.82 -0.25 0.88 16 39 H 0.23 -0.42 8.06 -52.49 -0.42 -0.85 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.10 1.80 7.00 -51.93 -0.36 1.44 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -41.74 361.08 -10.25 -51.99 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.41 Total: -1.09 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -2.67 Total: 4.28 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.45 Total: -51.87 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -41.74 -10.25 -51.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071096011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.672 kcal (2) G-P(sol) polarization free energy of solvation -41.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds