Wall clock time and date at job start Tue Mar 31 2020 23:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34769 * 125.65110 * 178.97664 * 5 4 2 7 7 O 1.21280 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00163 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46996 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99852 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99644 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00332 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47047 * 59.99632 * 14 12 10 16 16 H 1.48502 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46841 * 299.99560 * 14 12 10 18 18 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 19 19 C 1.55118 * 104.94414 * 24.00601 * 18 5 4 20 20 H 1.09004 * 110.93289 * 81.21359 * 19 18 5 21 21 N 1.46492 * 111.16628 * 205.12985 * 19 18 5 22 22 C 1.34782 * 120.00266 * 267.17331 * 21 19 18 23 23 O 1.21614 * 119.99565 * 359.97438 * 22 21 19 24 24 C 1.47231 * 120.00272 * 179.97438 * 22 21 19 25 25 C 1.37002 * 127.19076 * 179.97438 * 24 22 21 26 26 N 1.33319 * 106.37275 * 179.97438 * 25 24 22 27 27 N 1.28509 * 109.44063 * 0.02562 * 26 25 24 28 28 N 1.28714 * 110.63692 * 359.75295 * 27 26 25 29 29 H 0.97008 * 126.03338 * 180.26557 * 28 27 26 30 30 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 33 33 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 34 34 H 1.09000 * 109.88772 * 100.02731 * 4 2 1 35 35 H 1.08998 * 109.47124 * 299.99840 * 8 6 5 36 36 H 1.08996 * 109.47052 * 59.99857 * 8 6 5 37 37 H 0.97000 * 119.99393 * 179.97438 * 13 12 10 38 38 H 1.09003 * 110.36619 * 142.96814 * 18 5 4 39 39 H 1.09004 * 110.37083 * 265.18300 * 18 5 4 40 40 H 0.97004 * 120.00365 * 87.17024 * 21 19 18 41 41 H 1.07999 * 126.81359 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7193 -2.5519 -2.6628 8 6 5.1678 -3.0986 -0.8816 9 16 5.9628 -4.1332 -2.1362 10 6 7.2629 -4.8343 -1.1755 11 1 7.3656 -4.5723 -0.1328 12 6 8.1550 -5.7234 -1.7587 13 7 8.0295 -6.0431 -3.0295 14 14 9.5329 -6.4673 -0.7401 15 1 8.9533 -7.2322 0.3930 16 1 10.3405 -7.3785 -1.5903 17 1 10.3999 -5.3829 -0.2134 18 6 3.4633 -1.2509 0.6855 19 6 2.0790 -0.7933 1.2152 20 1 1.4452 -1.6511 1.4404 21 7 2.2214 0.0738 2.3874 22 6 2.1873 -0.4565 3.6260 23 8 2.0378 -1.6547 3.7706 24 6 2.3309 0.4149 4.8041 25 6 2.3179 0.0363 6.1207 26 7 2.4808 1.1508 6.8339 27 7 2.5881 2.1552 6.0393 28 7 2.5105 1.7734 4.8126 29 1 2.5676 2.3464 4.0319 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3634 0.5030 0.8962 33 1 1.3130 -1.4732 -1.5800 34 1 2.3741 -0.0991 -1.9979 35 1 5.8840 -2.3680 -0.5057 36 1 4.8229 -3.7256 -0.0595 37 1 8.6532 -6.6642 -3.4372 38 1 3.7960 -2.1446 1.2135 39 1 4.1946 -0.4504 0.7979 40 1 2.3403 1.0296 2.2721 41 1 2.1999 -0.9662 6.5047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071659503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:45 Heat of formation + Delta-G solvation = 29.988258 kcal Electronic energy + Delta-G solvation = -26180.148546 eV Core-core repulsion = 22223.751677 eV Total energy + Delta-G solvation = -3956.396870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.91742 -40.74729 -39.50592 -37.68679 -34.99035 -33.94864 -33.03030 -32.44578 -31.96817 -29.55678 -29.06136 -26.29142 -25.46041 -25.20887 -23.73541 -22.88065 -21.50007 -21.29153 -19.77080 -19.47736 -17.81349 -17.33841 -17.21036 -16.93430 -16.61215 -15.80143 -15.46562 -15.04146 -14.90414 -14.81750 -14.81365 -14.22158 -14.06417 -13.84879 -13.58568 -13.19092 -12.77390 -12.76313 -12.51094 -12.46760 -11.97957 -11.85177 -11.80435 -11.63051 -11.33781 -11.18413 -11.06301 -11.04601 -10.83392 -10.78183 -10.14518 -9.90611 -9.83163 -9.48482 -9.07540 -8.66582 -8.27780 -6.53389 -6.23361 -3.94668 0.28423 1.74157 1.80488 2.15801 2.45726 2.83521 2.96119 3.22925 3.24596 3.28313 3.54794 3.69253 3.82471 4.10031 4.11250 4.18859 4.30154 4.40893 4.57708 4.68823 4.85818 4.87604 4.93426 5.11826 5.25852 5.28873 5.36632 5.37210 5.43726 5.52616 5.56168 5.63315 5.68237 5.82186 5.85795 5.95739 6.08877 6.25668 6.61129 7.33876 7.49229 7.57851 7.68420 8.33330 8.43985 9.21907 10.84018 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002599 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.572701 B =10770.667872 C =12812.524672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.090 0.910 4 C 0.115 3.885 5 N -0.625 5.625 6 C 0.551 3.449 7 O -0.511 6.511 8 C -0.148 4.148 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.091 3.909 19 C 0.136 3.864 20 H 0.117 0.883 21 N -0.714 5.714 22 C 0.598 3.402 23 O -0.501 6.501 24 C -0.068 4.068 25 C 0.039 3.961 26 N -0.268 5.268 27 N -0.043 5.043 28 N -0.375 5.375 29 H 0.450 0.550 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.398 0.602 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 18.792 13.279 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.108 0.892 4 C -0.009 4.009 5 N -0.363 5.363 6 C 0.340 3.660 7 O -0.384 6.384 8 C -0.299 4.299 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.034 4.034 19 C 0.031 3.969 20 H 0.135 0.865 21 N -0.366 5.366 22 C 0.381 3.619 23 O -0.372 6.372 24 C -0.202 4.202 25 C -0.121 4.121 26 N -0.133 5.133 27 N -0.025 5.025 28 N -0.102 5.102 29 H 0.297 0.703 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.011 18.549 12.462 27.490 hybrid contribution 1.276 -0.201 0.748 1.493 sum -14.736 18.347 13.210 26.987 Atomic orbital electron populations 1.21781 0.92917 1.03020 1.02352 1.22526 0.97207 0.99532 0.93558 0.89172 1.21925 0.88390 0.94780 0.95783 1.48370 1.31002 1.46449 1.10513 1.20060 0.82670 0.77511 0.85807 1.90721 1.69719 1.62046 1.15905 1.23526 0.97684 1.02888 1.05754 1.85386 1.33731 1.52234 1.11920 1.22811 1.15345 1.31580 0.98663 0.90961 1.24991 0.97644 0.95631 0.95262 1.70010 1.36623 1.32785 1.10866 0.86218 0.80720 0.78921 0.79629 1.19866 1.20783 1.19936 1.22643 0.96540 1.02048 0.82175 1.22358 0.97016 0.94136 0.83433 0.86509 1.45685 1.74668 1.11025 1.05181 1.16750 0.77086 0.86859 0.81179 1.90940 1.47658 1.13455 1.85166 1.22333 1.15505 0.84325 0.98077 1.24003 0.99808 1.00283 0.87983 1.75053 1.16417 0.96133 1.25707 1.78263 1.16007 1.22001 0.86264 1.45609 1.47912 1.06923 1.09793 0.70298 0.91701 0.91604 0.92161 0.90758 0.90946 0.89327 0.89137 0.92099 0.89403 0.91089 0.76826 0.77651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.14 37.16 0.34 -0.33 16 2 C -0.11 -0.61 3.19 -88.79 -0.28 -0.90 16 3 H 0.09 0.33 8.00 -51.93 -0.42 -0.09 16 4 C 0.11 1.13 6.47 -3.06 -0.02 1.11 16 5 N -0.63 -8.23 3.33 -170.38 -0.57 -8.79 16 6 C 0.55 10.27 7.87 -10.99 -0.09 10.18 16 7 O -0.51 -11.50 16.19 5.56 0.09 -11.41 16 8 C -0.15 -3.00 5.16 36.01 0.19 -2.81 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 14 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.09 0.90 6.40 -2.41 -0.02 0.88 16 19 C 0.14 0.95 2.88 -65.67 -0.19 0.76 16 20 H 0.12 1.01 7.44 -51.93 -0.39 0.63 16 21 N -0.71 -3.33 5.20 -52.75 -0.27 -3.60 16 22 C 0.60 4.36 7.81 -12.60 -0.10 4.26 16 23 O -0.50 -5.67 16.56 5.27 0.09 -5.58 16 24 C -0.07 -0.44 7.17 -82.34 -0.59 -1.03 16 25 C 0.04 0.30 11.87 -17.35 -0.21 0.09 16 26 N -0.27 -2.52 12.35 30.47 0.38 -2.14 16 27 N -0.04 -0.34 13.35 60.35 0.81 0.46 16 28 N -0.37 -1.68 6.97 33.31 0.23 -1.45 16 29 H 0.45 0.09 8.32 -190.32 -1.58 -1.49 16 30 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.79 7.80 -51.93 -0.41 0.38 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.73 7.85 -51.92 -0.41 1.32 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.09 0.99 7.48 -51.93 -0.39 0.60 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.40 0.47 7.83 -40.82 -0.32 0.15 16 41 H 0.21 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -38.42 369.27 -7.36 -45.78 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -6.41 Total: -5.32 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.76 Total: -0.71 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 1.31 Total: -40.90 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.18 Total: -16.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.42 -7.36 -45.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.765 kcal (2) G-P(sol) polarization free energy of solvation -38.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds