Wall clock time and date at job start Tue Mar 31 2020 23:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34769 * 125.65110 * 178.97664 * 5 4 2 7 7 O 1.21280 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00163 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46996 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99852 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99644 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00332 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47047 * 59.99632 * 14 12 10 16 16 H 1.48502 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46841 * 299.99560 * 14 12 10 18 18 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 19 19 C 1.55118 * 104.94414 * 24.00601 * 18 5 4 20 20 H 1.09004 * 110.93289 * 81.21359 * 19 18 5 21 21 N 1.46492 * 111.16628 * 205.12985 * 19 18 5 22 22 C 1.34782 * 120.00266 * 267.17331 * 21 19 18 23 23 O 1.21614 * 119.99565 * 359.97438 * 22 21 19 24 24 C 1.47231 * 120.00272 * 179.97438 * 22 21 19 25 25 C 1.37002 * 127.19076 * 179.97438 * 24 22 21 26 26 N 1.33319 * 106.37275 * 179.97438 * 25 24 22 27 27 N 1.28509 * 109.44063 * 0.02562 * 26 25 24 28 28 N 1.28714 * 110.63692 * 359.75295 * 27 26 25 29 29 H 0.97008 * 126.03338 * 180.26557 * 28 27 26 30 30 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 33 33 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 34 34 H 1.09000 * 109.88772 * 100.02731 * 4 2 1 35 35 H 1.08998 * 109.47124 * 299.99840 * 8 6 5 36 36 H 1.08996 * 109.47052 * 59.99857 * 8 6 5 37 37 H 0.97000 * 119.99393 * 179.97438 * 13 12 10 38 38 H 1.09003 * 110.36619 * 142.96814 * 18 5 4 39 39 H 1.09004 * 110.37083 * 265.18300 * 18 5 4 40 40 H 0.97004 * 120.00365 * 87.17024 * 21 19 18 41 41 H 1.07999 * 126.81359 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7193 -2.5519 -2.6628 8 6 5.1678 -3.0986 -0.8816 9 16 5.9628 -4.1332 -2.1362 10 6 7.2629 -4.8343 -1.1755 11 1 7.3656 -4.5723 -0.1328 12 6 8.1550 -5.7234 -1.7587 13 7 8.0295 -6.0431 -3.0295 14 14 9.5329 -6.4673 -0.7401 15 1 8.9533 -7.2322 0.3930 16 1 10.3405 -7.3785 -1.5903 17 1 10.3999 -5.3829 -0.2134 18 6 3.4633 -1.2509 0.6855 19 6 2.0790 -0.7933 1.2152 20 1 1.4452 -1.6511 1.4404 21 7 2.2214 0.0738 2.3874 22 6 2.1873 -0.4565 3.6260 23 8 2.0378 -1.6547 3.7706 24 6 2.3309 0.4149 4.8041 25 6 2.3179 0.0363 6.1207 26 7 2.4808 1.1508 6.8339 27 7 2.5881 2.1552 6.0393 28 7 2.5105 1.7734 4.8126 29 1 2.5676 2.3464 4.0319 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3634 0.5030 0.8962 33 1 1.3130 -1.4732 -1.5800 34 1 2.3741 -0.0991 -1.9979 35 1 5.8840 -2.3680 -0.5057 36 1 4.8229 -3.7256 -0.0595 37 1 8.6532 -6.6642 -3.4372 38 1 3.7960 -2.1446 1.2135 39 1 4.1946 -0.4504 0.7979 40 1 2.3403 1.0296 2.2721 41 1 2.1999 -0.9662 6.5047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071659503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:44 Heat of formation + Delta-G solvation = -1.000889 kcal Electronic energy + Delta-G solvation = -26181.492336 eV Core-core repulsion = 22223.751677 eV Total energy + Delta-G solvation = -3957.740660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.45462 -41.56222 -40.50163 -38.77169 -35.73207 -34.61899 -34.58483 -33.79827 -32.53519 -30.98359 -29.83746 -27.77560 -26.96462 -25.88840 -24.37771 -23.55544 -22.09911 -21.87912 -20.86982 -20.21579 -19.63774 -18.26874 -17.94051 -17.72437 -17.46825 -16.90633 -16.78934 -16.63886 -16.00057 -15.76897 -15.72522 -15.32921 -14.81120 -14.72526 -14.57349 -14.42194 -14.30429 -13.63358 -13.35680 -13.31342 -13.18878 -13.12817 -12.88591 -12.66415 -12.42326 -12.41522 -12.20336 -11.86338 -11.77578 -11.75372 -11.49776 -11.15035 -11.08806 -10.73097 -10.40207 -10.32350 -9.77989 -8.70738 -8.36791 -6.15762 -0.24849 1.15027 1.18482 1.34353 1.42358 1.42886 1.48818 1.52598 1.67876 1.87952 2.10632 2.25145 2.97275 3.11136 3.25137 3.29148 3.40219 3.58887 3.73641 3.81975 3.88759 4.04250 4.08560 4.16017 4.20240 4.38148 4.42973 4.57259 4.68511 4.70910 4.81554 4.90274 4.94186 5.02275 5.15675 5.30472 5.38907 5.39102 5.65869 6.17157 6.17658 6.24571 6.82921 7.03700 7.04426 7.13542 8.72225 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002599 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.572701 B =10770.667872 C =12812.524672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.126 0.874 4 C 0.105 3.895 5 N -0.614 5.614 6 C 0.549 3.451 7 O -0.561 6.561 8 C -0.122 4.122 9 S -0.146 6.146 10 C -0.548 4.548 11 H 0.081 0.919 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.261 1.261 18 C 0.082 3.918 19 C 0.147 3.853 20 H 0.101 0.899 21 N -0.691 5.691 22 C 0.606 3.394 23 O -0.543 6.543 24 C -0.061 4.061 25 C 0.027 3.973 26 N -0.300 5.300 27 N -0.056 5.056 28 N -0.345 5.345 29 H 0.470 0.530 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.272 0.728 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.420 0.580 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 21.065 15.133 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.144 0.856 4 C -0.017 4.017 5 N -0.349 5.349 6 C 0.337 3.663 7 O -0.439 6.439 8 C -0.274 4.274 9 S 0.081 5.919 10 C -0.696 4.696 11 H 0.099 0.901 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.186 1.186 18 C -0.042 4.042 19 C 0.040 3.960 20 H 0.119 0.881 21 N -0.344 5.344 22 C 0.390 3.610 23 O -0.417 6.417 24 C -0.196 4.196 25 C -0.133 4.133 26 N -0.164 5.164 27 N -0.039 5.039 28 N -0.076 5.076 29 H 0.321 0.679 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.258 0.742 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.257 20.933 14.346 30.137 hybrid contribution 1.234 -0.802 0.187 1.484 sum -15.023 20.130 14.532 29.019 Atomic orbital electron populations 1.21788 0.91795 1.02621 1.03705 1.22491 0.97839 1.00173 0.90151 0.85600 1.22239 0.86812 0.94642 0.98032 1.48214 1.30541 1.44527 1.11639 1.19697 0.82858 0.78323 0.85431 1.90698 1.71092 1.64144 1.17931 1.23323 0.98416 1.02240 1.03379 1.85530 1.35192 1.54619 1.16580 1.23143 1.15543 1.31888 0.98992 0.90097 1.26121 1.00475 0.95920 0.96495 1.70174 1.37914 1.33605 1.12934 0.85014 0.77005 0.78212 0.77848 1.18780 1.20229 1.18568 1.22936 0.99016 1.02398 0.79873 1.22090 0.94933 0.94462 0.84474 0.88051 1.45400 1.73443 1.11913 1.03645 1.16750 0.76296 0.86206 0.81766 1.90938 1.49683 1.15348 1.85749 1.22066 1.15471 0.84792 0.97245 1.24278 0.99851 1.00525 0.88641 1.75041 1.17783 0.96785 1.26767 1.78197 1.16577 1.21891 0.87215 1.45549 1.45848 1.06464 1.09781 0.67879 0.93087 0.90677 0.90360 0.91802 0.90726 0.87565 0.88052 0.91905 0.90841 0.88659 0.74213 0.76878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.14 71.98 0.66 -0.20 16 2 C -0.09 -0.67 3.19 -9.61 -0.03 -0.70 16 3 H 0.13 0.18 8.00 -2.38 -0.02 0.16 16 4 C 0.11 1.90 6.47 86.73 0.56 2.46 16 5 N -0.61 -15.43 3.33 -811.35 -2.70 -18.13 16 6 C 0.55 20.63 7.87 87.66 0.69 21.32 16 7 O -0.56 -26.13 16.19 -3.03 -0.05 -26.18 16 8 C -0.12 -4.99 5.16 71.24 0.37 -4.63 16 9 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 10 C -0.55 -31.55 9.50 67.95 0.65 -30.90 16 11 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 12 C 0.01 0.85 5.49 84.86 0.47 1.32 16 13 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 14 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 18 C 0.08 1.42 6.40 86.93 0.56 1.97 16 19 C 0.15 1.62 2.88 46.46 0.13 1.75 16 20 H 0.10 1.57 7.44 -2.38 -0.02 1.56 16 21 N -0.69 -3.85 5.20 -439.07 -2.28 -6.14 16 22 C 0.61 7.31 7.81 86.61 0.68 7.98 16 23 O -0.54 -11.58 16.56 -4.08 -0.07 -11.64 16 24 C -0.06 -0.63 7.17 40.40 0.29 -0.34 16 25 C 0.03 0.39 11.87 84.18 1.00 1.39 16 26 N -0.30 -5.29 12.35 -57.50 -0.71 -6.00 16 27 N -0.06 -0.79 13.35 37.02 0.49 -0.29 16 28 N -0.35 -2.06 6.97 -48.53 -0.34 -2.40 16 29 H 0.47 -1.73 8.32 -219.89 -1.83 -3.56 16 30 H 0.05 0.48 8.12 -2.39 -0.02 0.46 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 33 H 0.06 1.31 7.80 -2.39 -0.02 1.30 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 36 H 0.10 3.88 7.85 -2.40 -0.02 3.86 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.07 1.54 7.48 -2.39 -0.02 1.52 16 39 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.42 -1.18 7.83 -92.71 -0.73 -1.91 16 41 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -88.31 369.27 0.05 -88.26 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -1.46 Total: 0.40 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.01 Total: 1.42 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -5.25 Total: -88.70 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.12 Total: -37.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -88.31 0.05 -88.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.264 kcal (2) G-P(sol) polarization free energy of solvation -88.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds