Wall clock time and date at job start Tue Mar 31 2020 23:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64283 * 2 1 4 4 C 1.54328 * 110.71958 * 123.14093 * 2 1 3 5 5 N 1.47324 * 107.12022 * 140.43018 * 4 2 1 6 6 C 1.34771 * 125.61414 * 181.11146 * 5 4 2 7 7 O 1.21277 * 120.00055 * 0.20035 * 6 5 4 8 8 C 1.50704 * 119.99891 * 180.19432 * 6 5 4 9 9 S 1.80997 * 109.47293 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00224 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99521 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00019 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99825 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47019 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46981 * 120.00293 * 14 12 10 17 17 H 1.48505 * 109.47068 * 240.00209 * 14 12 10 18 18 C 1.47426 * 108.73348 * 1.29932 * 5 4 2 19 19 C 1.54901 * 104.83570 * 335.72058 * 18 5 4 20 20 H 1.09004 * 111.04105 * 155.09616 * 19 18 5 21 21 N 1.46509 * 111.00316 * 278.93285 * 19 18 5 22 22 C 1.34767 * 120.00219 * 267.19667 * 21 19 18 23 23 O 1.21626 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.47231 * 120.00505 * 179.97438 * 22 21 19 25 25 C 1.37002 * 127.19263 * 179.68465 * 24 22 21 26 26 N 1.33324 * 106.37585 * 179.90407 * 25 24 22 27 27 N 1.28517 * 109.43451 * 0.37103 * 26 25 24 28 28 N 1.28721 * 110.63929 * 359.76062 * 27 26 25 29 29 H 0.96995 * 126.03352 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.69921 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.70112 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.70093 * 1 2 3 33 33 H 1.08999 * 109.88268 * 259.97599 * 4 2 1 34 34 H 1.08995 * 109.88243 * 21.13740 * 4 2 1 35 35 H 1.09004 * 109.46808 * 300.00258 * 8 6 5 36 36 H 1.09001 * 109.46820 * 59.99709 * 8 6 5 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.37129 * 216.87434 * 18 5 4 39 39 H 1.09002 * 110.45921 * 94.60333 * 18 5 4 40 40 H 0.97001 * 119.99965 * 87.19681 * 21 19 18 41 41 H 1.08001 * 126.81301 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2445 -1.5520 0.7365 6 6 3.9923 -2.3861 1.4858 7 8 3.7192 -2.5608 2.6544 8 6 5.1677 -3.1017 0.8715 9 16 5.9627 -4.1405 2.1225 10 6 7.2636 -4.8374 1.1599 11 1 7.3666 -4.5714 0.1182 12 6 8.1558 -5.7281 1.7403 13 7 8.0299 -6.0526 3.0098 14 14 9.5346 -6.4675 0.7196 15 1 9.4568 -5.9463 -0.6688 16 1 10.8439 -6.0983 1.3149 17 1 9.3985 -7.9462 0.7010 18 6 3.4633 -1.2486 -0.6896 19 6 2.0791 -0.7934 -1.2151 20 1 2.1844 -0.1484 -2.0875 21 7 1.2272 -1.9462 -1.5178 22 6 1.2026 -2.4571 -2.7646 23 8 1.8880 -1.9613 -3.6385 24 6 0.3469 -3.6160 -3.0687 25 6 0.2044 -4.2458 -4.2770 26 7 -0.6653 -5.2377 -4.0836 27 7 -1.0511 -5.2352 -2.8577 28 7 -0.4778 -4.2863 -2.2036 29 1 -0.6065 -4.0821 -1.2642 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3634 0.5247 0.8837 33 1 2.3740 -0.0990 1.9979 34 1 1.3129 -1.4731 1.5801 35 1 4.8226 -3.7260 0.0472 36 1 5.8838 -2.3698 0.4979 37 1 8.6537 -6.6748 3.4154 38 1 3.7961 -2.1405 -1.2205 39 1 4.1936 -0.4471 -0.8009 40 1 0.6808 -2.3419 -0.8207 41 1 0.6999 -3.9908 -5.2022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071659505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:51 Heat of formation + Delta-G solvation = 32.013573 kcal Electronic energy + Delta-G solvation = -26768.294928 eV Core-core repulsion = 22811.985883 eV Total energy + Delta-G solvation = -3956.309045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.78317 -40.86810 -39.38954 -37.73488 -34.73342 -33.80426 -32.92788 -32.47305 -31.82663 -29.60586 -29.27774 -26.34072 -25.47603 -25.15005 -23.62522 -22.93986 -21.71395 -20.56693 -19.94661 -19.42888 -17.78031 -17.32769 -17.12259 -16.80830 -16.58196 -15.88143 -15.40678 -15.17662 -14.84281 -14.80107 -14.68242 -14.47553 -13.92999 -13.88745 -13.43105 -13.18090 -12.68739 -12.67848 -12.60945 -12.49503 -12.10982 -11.77821 -11.72982 -11.50201 -11.29438 -11.20482 -11.09715 -11.06087 -10.79109 -10.74429 -10.04222 -9.87650 -9.81496 -9.51641 -9.11529 -8.66641 -8.30244 -6.56582 -6.26266 -3.97695 0.41181 1.86688 1.94968 2.33949 2.56644 2.75522 2.92238 3.19278 3.22924 3.28714 3.51754 3.78438 3.84826 4.07552 4.16258 4.19407 4.30333 4.51834 4.69186 4.72434 4.79170 4.89805 5.00711 5.09351 5.10979 5.21323 5.32879 5.39242 5.46877 5.53806 5.54546 5.60740 5.64456 5.80425 5.83600 6.05152 6.08421 6.22459 6.71236 7.42536 7.46906 7.56066 7.81750 8.31188 8.40740 9.19559 10.81213 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003160 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.510175 B = 8858.698403 C =10530.241676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.105 0.895 4 C 0.109 3.891 5 N -0.627 5.627 6 C 0.549 3.451 7 O -0.513 6.513 8 C -0.148 4.148 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.089 3.911 19 C 0.136 3.864 20 H 0.121 0.879 21 N -0.712 5.712 22 C 0.600 3.400 23 O -0.508 6.508 24 C -0.069 4.069 25 C 0.038 3.962 26 N -0.269 5.269 27 N -0.041 5.041 28 N -0.373 5.373 29 H 0.451 0.549 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.398 0.602 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.568 13.471 -10.863 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.123 0.877 4 C -0.014 4.014 5 N -0.366 5.366 6 C 0.338 3.662 7 O -0.386 6.386 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.036 4.036 19 C 0.031 3.969 20 H 0.138 0.862 21 N -0.364 5.364 22 C 0.384 3.616 23 O -0.381 6.381 24 C -0.204 4.204 25 C -0.122 4.122 26 N -0.134 5.134 27 N -0.023 5.023 28 N -0.101 5.101 29 H 0.297 0.703 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.233 0.767 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.288 12.219 -9.617 24.775 hybrid contribution 1.694 0.489 -0.998 2.026 sum -17.594 12.708 -10.615 24.161 Atomic orbital electron populations 1.21713 0.93310 1.01864 1.02934 1.22596 0.96957 1.00162 0.93301 0.87674 1.22041 0.88330 0.94741 0.96299 1.48593 1.30965 1.46063 1.10930 1.20062 0.82671 0.77677 0.85826 1.90719 1.69680 1.62307 1.15931 1.23518 0.97787 1.02917 1.05576 1.85380 1.33752 1.52044 1.12184 1.22891 1.15283 1.31391 0.98794 0.90865 1.24988 0.97638 0.95613 0.95259 1.70022 1.36546 1.32686 1.11004 0.86118 0.80736 0.78833 0.79843 1.19555 1.20487 1.20512 1.22756 0.96620 1.02304 0.81887 1.22228 0.89199 0.86711 0.98775 0.86158 1.45789 1.46587 1.33476 1.10527 1.16716 0.80891 0.81174 0.82825 1.90900 1.41565 1.59480 1.46147 1.22324 1.03307 1.01997 0.92735 1.23964 0.97527 0.92370 0.98324 1.75047 1.12318 1.18900 1.07113 1.78273 1.16551 1.06840 1.00669 1.45622 1.29167 1.21665 1.13622 0.70273 0.92916 0.91624 0.91418 0.90889 0.91471 0.89498 0.89209 0.92190 0.89699 0.89756 0.76713 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.51 8.75 37.16 0.33 -0.19 16 2 C -0.11 -0.58 3.41 -88.78 -0.30 -0.88 16 3 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.11 0.98 6.48 -2.90 -0.02 0.96 16 5 N -0.63 -7.69 3.33 -170.28 -0.57 -8.26 16 6 C 0.55 9.85 7.87 -10.99 -0.09 9.77 16 7 O -0.51 -11.19 16.19 5.56 0.09 -11.10 16 8 C -0.15 -2.94 5.16 36.01 0.19 -2.75 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 14 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.09 0.84 6.38 -2.53 -0.02 0.82 16 19 C 0.14 0.89 3.18 -65.78 -0.21 0.69 16 20 H 0.12 0.76 7.54 -51.93 -0.39 0.36 16 21 N -0.71 -4.52 4.53 -52.86 -0.24 -4.76 16 22 C 0.60 5.11 7.81 -12.61 -0.10 5.01 16 23 O -0.51 -5.82 16.56 5.25 0.09 -5.73 16 24 C -0.07 -0.57 7.17 -82.34 -0.59 -1.16 16 25 C 0.04 0.35 11.87 -17.35 -0.21 0.14 16 26 N -0.27 -2.99 12.35 30.47 0.38 -2.61 16 27 N -0.04 -0.41 13.35 60.35 0.81 0.39 16 28 N -0.37 -2.61 6.97 33.31 0.23 -2.38 16 29 H 0.45 1.53 8.32 -190.33 -1.58 -0.06 16 30 H 0.05 0.16 6.43 -51.93 -0.33 -0.17 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 35 H 0.09 1.64 7.85 -51.91 -0.41 1.23 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.93 7.48 -51.93 -0.39 0.54 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.40 1.84 6.41 -40.82 -0.26 1.57 16 41 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -37.73 365.87 -7.30 -45.02 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.27 Total: -2.89 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.82 Total: -0.47 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 1.34 Total: -42.87 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.73 -7.30 -45.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.038 kcal (2) G-P(sol) polarization free energy of solvation -37.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds