Wall clock time and date at job start Tue Mar 31 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64283 * 2 1 4 4 C 1.54328 * 110.71958 * 123.14093 * 2 1 3 5 5 N 1.47324 * 107.12022 * 140.43018 * 4 2 1 6 6 C 1.34771 * 125.61414 * 181.11146 * 5 4 2 7 7 O 1.21277 * 120.00055 * 0.20035 * 6 5 4 8 8 C 1.50704 * 119.99891 * 180.19432 * 6 5 4 9 9 S 1.80997 * 109.47293 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00224 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99521 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00019 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99825 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47019 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46981 * 120.00293 * 14 12 10 17 17 H 1.48505 * 109.47068 * 240.00209 * 14 12 10 18 18 C 1.47426 * 108.73348 * 1.29932 * 5 4 2 19 19 C 1.54901 * 104.83570 * 335.72058 * 18 5 4 20 20 H 1.09004 * 111.04105 * 155.09616 * 19 18 5 21 21 N 1.46509 * 111.00316 * 278.93285 * 19 18 5 22 22 C 1.34767 * 120.00219 * 267.19667 * 21 19 18 23 23 O 1.21626 * 120.00020 * 0.02562 * 22 21 19 24 24 C 1.47231 * 120.00505 * 179.97438 * 22 21 19 25 25 C 1.37002 * 127.19263 * 179.68465 * 24 22 21 26 26 N 1.33324 * 106.37585 * 179.90407 * 25 24 22 27 27 N 1.28517 * 109.43451 * 0.37103 * 26 25 24 28 28 N 1.28721 * 110.63929 * 359.76062 * 27 26 25 29 29 H 0.96995 * 126.03352 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.69921 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.70112 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.70093 * 1 2 3 33 33 H 1.08999 * 109.88268 * 259.97599 * 4 2 1 34 34 H 1.08995 * 109.88243 * 21.13740 * 4 2 1 35 35 H 1.09004 * 109.46808 * 300.00258 * 8 6 5 36 36 H 1.09001 * 109.46820 * 59.99709 * 8 6 5 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.37129 * 216.87434 * 18 5 4 39 39 H 1.09002 * 110.45921 * 94.60333 * 18 5 4 40 40 H 0.97001 * 119.99965 * 87.19681 * 21 19 18 41 41 H 1.08001 * 126.81301 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2445 -1.5520 0.7365 6 6 3.9923 -2.3861 1.4858 7 8 3.7192 -2.5608 2.6544 8 6 5.1677 -3.1017 0.8715 9 16 5.9627 -4.1405 2.1225 10 6 7.2636 -4.8374 1.1599 11 1 7.3666 -4.5714 0.1182 12 6 8.1558 -5.7281 1.7403 13 7 8.0299 -6.0526 3.0098 14 14 9.5346 -6.4675 0.7196 15 1 9.4568 -5.9463 -0.6688 16 1 10.8439 -6.0983 1.3149 17 1 9.3985 -7.9462 0.7010 18 6 3.4633 -1.2486 -0.6896 19 6 2.0791 -0.7934 -1.2151 20 1 2.1844 -0.1484 -2.0875 21 7 1.2272 -1.9462 -1.5178 22 6 1.2026 -2.4571 -2.7646 23 8 1.8880 -1.9613 -3.6385 24 6 0.3469 -3.6160 -3.0687 25 6 0.2044 -4.2458 -4.2770 26 7 -0.6653 -5.2377 -4.0836 27 7 -1.0511 -5.2352 -2.8577 28 7 -0.4778 -4.2863 -2.2036 29 1 -0.6065 -4.0821 -1.2642 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3634 0.5247 0.8837 33 1 2.3740 -0.0990 1.9979 34 1 1.3129 -1.4731 1.5801 35 1 4.8226 -3.7260 0.0472 36 1 5.8838 -2.3698 0.4979 37 1 8.6537 -6.6748 3.4154 38 1 3.7961 -2.1405 -1.2205 39 1 4.1936 -0.4471 -0.8009 40 1 0.6808 -2.3419 -0.8207 41 1 0.6999 -3.9908 -5.2022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071659505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:50 Heat of formation + Delta-G solvation = 2.398476 kcal Electronic energy + Delta-G solvation = -26769.579135 eV Core-core repulsion = 22811.985883 eV Total energy + Delta-G solvation = -3957.593252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.47639 -41.66955 -40.41145 -38.77330 -35.54107 -34.63284 -34.57965 -33.63964 -32.51460 -30.97581 -30.04435 -27.78972 -26.95185 -25.87879 -24.38314 -23.69536 -22.38367 -21.16732 -20.83868 -20.44773 -19.59409 -18.21044 -17.91297 -17.76078 -17.49476 -16.92466 -16.90818 -16.45023 -15.99867 -15.86204 -15.60062 -15.36093 -15.28919 -14.65765 -14.45552 -14.35288 -13.72310 -13.68376 -13.50197 -13.36878 -13.18751 -13.14639 -12.94406 -12.65840 -12.46040 -12.38327 -12.00838 -11.90007 -11.80959 -11.73432 -11.46894 -11.19389 -11.05496 -10.74699 -10.45819 -10.33092 -9.70258 -8.71769 -8.38889 -6.17347 -0.26373 1.13698 1.20255 1.35981 1.38424 1.41707 1.50700 1.54031 1.74772 1.89286 2.02287 2.23271 2.95602 3.13060 3.20657 3.30883 3.42042 3.56507 3.74306 3.85553 3.86545 4.04254 4.12641 4.16494 4.31760 4.39430 4.47573 4.55694 4.65511 4.73935 4.77028 4.89677 5.01295 5.08496 5.18584 5.32562 5.36600 5.38064 5.57707 6.13178 6.15849 6.27519 6.78961 7.02904 7.06121 7.10877 8.70510 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003160 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.510175 B = 8858.698403 C =10530.241676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.126 0.874 4 C 0.101 3.899 5 N -0.613 5.613 6 C 0.548 3.452 7 O -0.561 6.561 8 C -0.122 4.122 9 S -0.144 6.144 10 C -0.548 4.548 11 H 0.079 0.921 12 C 0.017 3.983 13 N -0.909 5.909 14 Si 0.996 3.004 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.273 1.273 18 C 0.079 3.921 19 C 0.143 3.857 20 H 0.135 0.865 21 N -0.701 5.701 22 C 0.607 3.393 23 O -0.537 6.537 24 C -0.066 4.066 25 C 0.029 3.971 26 N -0.298 5.298 27 N -0.060 5.060 28 N -0.352 5.352 29 H 0.466 0.534 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.408 0.592 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.135 15.071 -12.634 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.144 0.856 4 C -0.021 4.021 5 N -0.348 5.348 6 C 0.336 3.664 7 O -0.440 6.440 8 C -0.274 4.274 9 S 0.083 5.917 10 C -0.696 4.696 11 H 0.097 0.903 12 C -0.188 4.188 13 N -0.546 5.546 14 Si 0.818 3.182 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.199 1.199 18 C -0.044 4.044 19 C 0.038 3.962 20 H 0.153 0.847 21 N -0.353 5.353 22 C 0.391 3.609 23 O -0.411 6.411 24 C -0.201 4.201 25 C -0.131 4.131 26 N -0.162 5.162 27 N -0.042 5.042 28 N -0.082 5.082 29 H 0.316 0.684 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.245 0.755 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.912 13.852 -11.392 26.798 hybrid contribution 1.784 0.111 -0.462 1.846 sum -18.128 13.963 -11.854 25.770 Atomic orbital electron populations 1.21744 0.91645 1.02616 1.03799 1.22564 0.98068 1.00118 0.90168 0.85627 1.22353 0.86963 0.94697 0.98089 1.48437 1.30494 1.44034 1.11836 1.19628 0.82761 0.78553 0.85417 1.90699 1.70995 1.64412 1.17877 1.23316 0.98597 1.02182 1.03269 1.85498 1.35086 1.54383 1.16761 1.23204 1.15616 1.31700 0.99033 0.90251 1.26082 1.00395 0.95897 0.96466 1.70172 1.37855 1.33517 1.13019 0.84944 0.76988 0.77887 0.78390 1.18234 1.19670 1.19871 1.23064 0.99138 1.02456 0.79778 1.22255 0.87541 0.86696 0.99692 0.84730 1.45735 1.46174 1.33257 1.10122 1.16647 0.80375 0.80850 0.83012 1.90893 1.42776 1.60335 1.47134 1.22286 1.03251 1.01900 0.92657 1.24320 0.97301 0.92051 0.99418 1.75022 1.13421 1.20057 1.07706 1.78216 1.17361 1.07839 1.00806 1.45594 1.27940 1.20484 1.14204 0.68430 0.92312 0.90576 0.90774 0.91368 0.91227 0.88369 0.87864 0.91900 0.91006 0.87951 0.75547 0.76297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.48 8.75 71.98 0.63 0.15 16 2 C -0.09 -0.61 3.41 -9.61 -0.03 -0.64 16 3 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 4 C 0.10 1.58 6.48 86.67 0.56 2.14 16 5 N -0.61 -14.03 3.33 -811.05 -2.70 -16.73 16 6 C 0.55 19.60 7.87 87.66 0.69 20.28 16 7 O -0.56 -25.08 16.19 -3.02 -0.05 -25.13 16 8 C -0.12 -4.88 5.16 71.24 0.37 -4.51 16 9 S -0.14 -7.98 20.57 -56.49 -1.16 -9.14 16 10 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 11 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 12 C 0.02 0.95 5.49 84.86 0.47 1.41 16 13 N -0.91 -55.60 13.22 21.65 0.29 -55.31 16 14 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 15 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 C 0.08 1.29 6.38 86.85 0.55 1.84 16 19 C 0.14 1.40 3.18 46.38 0.15 1.55 16 20 H 0.14 1.14 7.54 -2.39 -0.02 1.12 16 21 N -0.70 -6.92 4.53 -439.41 -1.99 -8.91 16 22 C 0.61 8.98 7.81 86.61 0.68 9.66 16 23 O -0.54 -11.19 16.56 -4.11 -0.07 -11.25 16 24 C -0.07 -0.98 7.17 40.40 0.29 -0.69 16 25 C 0.03 0.51 11.87 84.18 1.00 1.51 16 26 N -0.30 -6.47 12.35 -57.50 -0.71 -7.18 16 27 N -0.06 -1.17 13.35 37.02 0.49 -0.67 16 28 N -0.35 -4.39 6.97 -48.53 -0.34 -4.73 16 29 H 0.47 2.23 8.32 -219.90 -1.83 0.40 16 30 H 0.06 0.14 6.43 -2.39 -0.02 0.13 16 31 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.10 7.80 -2.39 -0.02 1.08 16 35 H 0.10 3.65 7.85 -2.39 -0.02 3.63 16 36 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.07 1.42 7.48 -2.39 -0.02 1.40 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.41 2.54 6.41 -92.71 -0.59 1.95 16 41 H 0.22 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -84.94 365.87 0.46 -84.48 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -1.32 Total: 6.85 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.99 Total: 1.97 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -4.96 Total: -93.54 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.12 Total: -36.39 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -84.94 0.46 -84.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.883 kcal (2) G-P(sol) polarization free energy of solvation -84.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds