Wall clock time and date at job start Tue Mar 31 2020 23:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.88686 * 2 1 4 4 C 1.55132 * 110.90532 * 124.09268 * 2 1 3 5 5 N 1.47429 * 104.72037 * 155.27662 * 4 2 1 6 6 C 1.34776 * 125.64380 * 155.81724 * 5 4 2 7 7 O 1.21280 * 120.00458 * 359.71547 * 6 5 4 8 8 C 1.50702 * 119.99564 * 179.71782 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47021 * 108.70411 * 335.55463 * 5 4 2 19 19 C 1.54323 * 107.27097 * 1.28716 * 18 5 4 20 20 H 1.09005 * 110.71816 * 263.83158 * 19 18 5 21 21 N 1.46492 * 110.72079 * 140.55829 * 19 18 5 22 22 C 1.34781 * 120.00306 * 86.45308 * 21 19 18 23 23 O 1.21620 * 119.99414 * 359.97438 * 22 21 19 24 24 C 1.47229 * 120.00360 * 180.02562 * 22 21 19 25 25 C 1.37003 * 127.19317 * 179.68062 * 24 22 21 26 26 N 1.33318 * 106.37686 * 179.90385 * 25 24 22 27 27 N 1.28515 * 109.43565 * 0.37084 * 26 25 24 28 28 N 1.28714 * 110.63930 * 359.76336 * 27 26 25 29 29 H 0.97000 * 126.03311 * 180.02562 * 28 27 26 30 30 H 1.08995 * 109.46989 * 183.88127 * 1 2 3 31 31 H 1.08995 * 109.47325 * 303.88179 * 1 2 3 32 32 H 1.08998 * 109.46771 * 63.88487 * 1 2 3 33 33 H 1.08997 * 110.49741 * 36.43864 * 4 2 1 34 34 H 1.09001 * 110.34145 * 274.03766 * 4 2 1 35 35 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 36 36 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 37 37 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 38 38 H 1.09002 * 109.88117 * 120.70750 * 18 5 4 39 39 H 1.09003 * 109.87862 * 241.71347 * 18 5 4 40 40 H 0.97007 * 120.00380 * 266.45463 * 21 19 18 41 41 H 1.08004 * 126.81087 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0835 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7729 6 6 4.4476 -1.5621 1.5936 7 8 4.3008 -1.5009 2.7959 8 6 5.7711 -1.9945 1.0171 9 16 6.9275 -2.3517 2.3631 10 6 8.3473 -2.8199 1.4304 11 1 8.3086 -2.8194 0.3511 12 6 9.5153 -3.1894 2.0828 13 7 9.5626 -3.1896 3.3982 14 14 11.0207 -3.6851 1.0941 15 1 10.7104 -3.6012 -0.3557 16 1 11.4023 -5.0784 1.4384 17 1 12.1460 -2.7704 1.4136 18 6 3.4675 -1.2738 -0.6964 19 6 2.0862 -0.8075 -1.2025 20 1 1.4468 -1.6627 -1.4215 21 7 2.2287 0.0504 -2.3814 22 6 2.3022 -0.4992 -3.6099 23 8 2.2508 -1.7074 -3.7395 24 6 2.4460 0.3629 -4.7947 25 6 2.5402 -0.0353 -6.1022 26 7 2.6540 1.0778 -6.8269 27 7 2.6418 2.0991 -6.0468 28 7 2.5196 1.7311 -4.8195 29 1 2.4852 2.3185 -4.0484 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9228 33 1 1.4524 -1.6786 1.3982 34 1 2.1515 -0.1808 2.0860 35 1 6.1741 -1.1964 0.3937 36 1 5.6290 -2.8908 0.4133 37 1 8.7810 -2.9318 3.9118 38 1 4.2427 -0.5993 -1.0600 39 1 3.6678 -2.2885 -1.0407 40 1 2.2701 1.0140 -2.2780 41 1 2.5234 -1.0498 -6.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071659506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:54 Heat of formation + Delta-G solvation = 24.737941 kcal Electronic energy + Delta-G solvation = -26255.793255 eV Core-core repulsion = 22299.168714 eV Total energy + Delta-G solvation = -3956.624540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.92081 -40.82043 -39.56151 -37.76708 -35.01434 -33.96797 -33.09031 -32.56700 -31.97976 -29.70123 -29.10613 -26.35655 -25.27264 -24.82605 -23.75247 -22.91918 -21.48218 -21.37277 -19.77812 -19.50576 -18.30667 -17.50060 -17.24574 -16.94039 -16.68053 -16.07314 -15.54537 -15.21651 -15.01860 -14.82512 -14.51049 -14.11219 -13.96911 -13.88566 -13.62375 -13.19831 -12.80760 -12.77601 -12.56499 -12.42121 -12.09312 -11.94510 -11.88795 -11.84923 -11.66374 -11.34105 -11.24548 -10.92445 -10.85096 -10.22767 -10.16292 -9.94807 -9.63291 -9.59402 -9.04629 -8.75081 -8.27239 -6.72498 -6.65969 -4.04557 0.27566 1.73601 1.80244 2.14409 2.43982 2.70767 2.83860 3.29205 3.37842 3.38492 3.52394 3.66345 3.76043 4.02721 4.09653 4.20633 4.29422 4.39807 4.57204 4.62671 4.79219 4.83531 4.84858 5.18389 5.18876 5.22622 5.26206 5.32671 5.40935 5.42624 5.50251 5.55715 5.61700 5.72890 5.77123 5.94666 5.95134 6.15191 6.58391 7.30576 7.39834 7.68130 7.89788 8.31815 8.46628 9.23118 10.78091 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.002711 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.936501 B =10325.069856 C =12452.711518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.092 0.908 4 C 0.113 3.887 5 N -0.625 5.625 6 C 0.549 3.451 7 O -0.512 6.512 8 C -0.125 4.125 9 S -0.116 6.116 10 C -0.607 4.607 11 H 0.067 0.933 12 C 0.036 3.964 13 N -0.885 5.885 14 Si 1.090 2.910 15 H -0.288 1.288 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.091 3.909 19 C 0.141 3.859 20 H 0.115 0.885 21 N -0.716 5.716 22 C 0.598 3.402 23 O -0.502 6.502 24 C -0.069 4.069 25 C 0.039 3.961 26 N -0.268 5.268 27 N -0.042 5.042 28 N -0.375 5.375 29 H 0.451 0.549 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.278 0.722 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.398 0.602 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.182 10.711 -14.838 27.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.386 6.386 8 C -0.276 4.276 9 S 0.110 5.890 10 C -0.755 4.755 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.916 3.084 15 H -0.214 1.214 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.034 4.034 19 C 0.036 3.964 20 H 0.132 0.868 21 N -0.367 5.367 22 C 0.382 3.618 23 O -0.374 6.374 24 C -0.203 4.203 25 C -0.121 4.121 26 N -0.133 5.133 27 N -0.024 5.024 28 N -0.102 5.102 29 H 0.297 0.703 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.233 0.767 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -19.655 10.451 -13.982 26.288 hybrid contribution -1.357 0.447 -0.506 1.516 sum -21.012 10.897 -14.488 27.752 Atomic orbital electron populations 1.21725 0.92774 1.03022 1.02463 1.22725 0.97033 0.99650 0.93631 0.88994 1.22274 0.83317 0.98342 0.97062 1.48385 1.12224 1.69597 1.06112 1.20015 0.84037 0.76092 0.86055 1.90720 1.82255 1.51418 1.14183 1.23300 0.95368 1.04126 1.04816 1.84813 1.07546 1.87977 1.08650 1.23748 0.98997 1.56930 0.95817 0.91517 1.26065 1.00752 0.93802 0.96871 1.70742 1.33272 1.42242 1.05619 0.83251 0.74083 0.77058 0.74011 1.21369 1.20817 1.20854 1.22390 0.97289 1.02854 0.80907 1.22157 0.96433 0.94287 0.83565 0.86763 1.45796 1.75116 1.10249 1.05587 1.16756 0.76906 0.86992 0.81163 1.90928 1.48464 1.12789 1.85231 1.22323 1.15969 0.83862 0.98195 1.23997 0.99713 1.00414 0.87929 1.75057 1.16777 0.95680 1.25792 1.78270 1.15645 1.22031 0.86488 1.45615 1.48193 1.06401 1.09991 0.70278 0.91702 0.91529 0.92072 0.90878 0.89644 0.89141 0.88913 0.90934 0.90897 0.90129 0.76739 0.77658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 9.31 37.16 0.35 -0.23 16 2 C -0.11 -0.62 3.26 -88.35 -0.29 -0.91 16 3 H 0.09 0.41 8.00 -51.93 -0.42 0.00 16 4 C 0.11 1.09 6.38 -2.41 -0.02 1.07 16 5 N -0.63 -8.09 3.32 -170.38 -0.57 -8.66 16 6 C 0.55 10.11 7.87 -10.98 -0.09 10.03 16 7 O -0.51 -11.35 16.12 5.56 0.09 -11.26 16 8 C -0.13 -2.54 5.35 36.01 0.19 -2.34 16 9 S -0.12 -3.12 19.60 -107.50 -2.11 -5.22 16 10 C -0.61 -17.46 9.50 30.94 0.29 -17.17 16 11 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 12 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 13 N -0.88 -27.44 13.67 55.49 0.76 -26.69 16 14 Si 1.09 25.05 29.92 -169.99 -5.09 19.97 16 15 H -0.29 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.09 0.91 6.23 -3.06 -0.02 0.89 16 19 C 0.14 0.94 2.70 -66.10 -0.18 0.76 16 20 H 0.11 0.85 7.60 -51.93 -0.39 0.45 16 21 N -0.72 -3.43 5.13 -53.17 -0.27 -3.71 16 22 C 0.60 4.35 7.80 -12.61 -0.10 4.25 16 23 O -0.50 -5.49 16.65 5.26 0.09 -5.40 16 24 C -0.07 -0.45 7.17 -82.33 -0.59 -1.04 16 25 C 0.04 0.30 11.87 -17.35 -0.21 0.10 16 26 N -0.27 -2.57 12.35 30.47 0.38 -2.19 16 27 N -0.04 -0.35 13.35 60.35 0.81 0.46 16 28 N -0.37 -1.81 6.97 33.31 0.23 -1.58 16 29 H 0.45 0.30 8.32 -190.33 -1.58 -1.28 16 30 H 0.06 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 34 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 35 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.28 8.80 7.13 -40.82 -0.29 8.51 16 38 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 0.66 7.78 -40.82 -0.32 0.34 16 41 H 0.21 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -38.86 368.84 -7.28 -46.14 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.41 Total: -3.76 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.75 Total: -3.67 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.33 Total: -42.36 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.18 Total: -16.66 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.97 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.86 -7.28 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.875 kcal (2) G-P(sol) polarization free energy of solvation -38.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds