Wall clock time and date at job start Tue Mar 31 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.88686 * 2 1 4 4 C 1.55132 * 110.90532 * 124.09268 * 2 1 3 5 5 N 1.47429 * 104.72037 * 155.27662 * 4 2 1 6 6 C 1.34776 * 125.64380 * 155.81724 * 5 4 2 7 7 O 1.21280 * 120.00458 * 359.71547 * 6 5 4 8 8 C 1.50702 * 119.99564 * 179.71782 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47021 * 108.70411 * 335.55463 * 5 4 2 19 19 C 1.54323 * 107.27097 * 1.28716 * 18 5 4 20 20 H 1.09005 * 110.71816 * 263.83158 * 19 18 5 21 21 N 1.46492 * 110.72079 * 140.55829 * 19 18 5 22 22 C 1.34781 * 120.00306 * 86.45308 * 21 19 18 23 23 O 1.21620 * 119.99414 * 359.97438 * 22 21 19 24 24 C 1.47229 * 120.00360 * 180.02562 * 22 21 19 25 25 C 1.37003 * 127.19317 * 179.68062 * 24 22 21 26 26 N 1.33318 * 106.37686 * 179.90385 * 25 24 22 27 27 N 1.28515 * 109.43565 * 0.37084 * 26 25 24 28 28 N 1.28714 * 110.63930 * 359.76336 * 27 26 25 29 29 H 0.97000 * 126.03311 * 180.02562 * 28 27 26 30 30 H 1.08995 * 109.46989 * 183.88127 * 1 2 3 31 31 H 1.08995 * 109.47325 * 303.88179 * 1 2 3 32 32 H 1.08998 * 109.46771 * 63.88487 * 1 2 3 33 33 H 1.08997 * 110.49741 * 36.43864 * 4 2 1 34 34 H 1.09001 * 110.34145 * 274.03766 * 4 2 1 35 35 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 36 36 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 37 37 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 38 38 H 1.09002 * 109.88117 * 120.70750 * 18 5 4 39 39 H 1.09003 * 109.87862 * 241.71347 * 18 5 4 40 40 H 0.97007 * 120.00380 * 266.45463 * 21 19 18 41 41 H 1.08004 * 126.81087 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0835 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7729 6 6 4.4476 -1.5621 1.5936 7 8 4.3008 -1.5009 2.7959 8 6 5.7711 -1.9945 1.0171 9 16 6.9275 -2.3517 2.3631 10 6 8.3473 -2.8199 1.4304 11 1 8.3086 -2.8194 0.3511 12 6 9.5153 -3.1894 2.0828 13 7 9.5626 -3.1896 3.3982 14 14 11.0207 -3.6851 1.0941 15 1 10.7104 -3.6012 -0.3557 16 1 11.4023 -5.0784 1.4384 17 1 12.1460 -2.7704 1.4136 18 6 3.4675 -1.2738 -0.6964 19 6 2.0862 -0.8075 -1.2025 20 1 1.4468 -1.6627 -1.4215 21 7 2.2287 0.0504 -2.3814 22 6 2.3022 -0.4992 -3.6099 23 8 2.2508 -1.7074 -3.7395 24 6 2.4460 0.3629 -4.7947 25 6 2.5402 -0.0353 -6.1022 26 7 2.6540 1.0778 -6.8269 27 7 2.6418 2.0991 -6.0468 28 7 2.5196 1.7311 -4.8195 29 1 2.4852 2.3185 -4.0484 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9228 33 1 1.4524 -1.6786 1.3982 34 1 2.1515 -0.1808 2.0860 35 1 6.1741 -1.1964 0.3937 36 1 5.6290 -2.8908 0.4133 37 1 8.7810 -2.9318 3.9118 38 1 4.2427 -0.5993 -1.0600 39 1 3.6678 -2.2885 -1.0407 40 1 2.2701 1.0140 -2.2780 41 1 2.5234 -1.0498 -6.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071659506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:53 Heat of formation + Delta-G solvation = -6.336669 kcal Electronic energy + Delta-G solvation = -26257.140751 eV Core-core repulsion = 22299.168714 eV Total energy + Delta-G solvation = -3957.972037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.47134 -41.63638 -40.55058 -38.82474 -35.75473 -34.78636 -34.62490 -33.83414 -32.55382 -31.11694 -29.87882 -27.39266 -26.83403 -25.91849 -24.40945 -23.58835 -22.10125 -21.93344 -20.97927 -20.23457 -20.16868 -18.42613 -17.95262 -17.75595 -17.46950 -17.18266 -16.85140 -16.31765 -15.86567 -15.79652 -15.70467 -15.35168 -14.98263 -14.87098 -14.60643 -14.37434 -14.18698 -14.03859 -13.58989 -13.48006 -13.36826 -13.11109 -12.78465 -12.49059 -12.43351 -12.24538 -11.95604 -11.88388 -11.79987 -11.60064 -11.50300 -11.19568 -11.14546 -10.75224 -10.42675 -10.37341 -9.87136 -8.96037 -8.91966 -6.31845 -0.26639 1.07060 1.13902 1.33816 1.38669 1.49049 1.59762 1.62675 1.76570 1.86295 2.00293 2.29719 2.98870 2.99115 3.15282 3.22965 3.34467 3.56787 3.64192 3.77473 3.87087 3.95816 4.04202 4.07897 4.15592 4.25351 4.39376 4.51986 4.62708 4.63899 4.79423 4.88873 4.92272 5.01539 5.14616 5.20741 5.38843 5.61042 5.62687 6.11921 6.13867 6.16395 6.78916 6.93065 7.02449 7.11833 8.47634 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.002711 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.936501 B =10325.069856 C =12452.711518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.113 0.887 4 C 0.103 3.897 5 N -0.612 5.612 6 C 0.549 3.451 7 O -0.560 6.560 8 C -0.103 4.103 9 S -0.190 6.190 10 C -0.613 4.613 11 H 0.072 0.928 12 C -0.017 4.017 13 N -0.912 5.912 14 Si 1.141 2.859 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.082 3.918 19 C 0.152 3.848 20 H 0.113 0.887 21 N -0.696 5.696 22 C 0.606 3.394 23 O -0.539 6.539 24 C -0.062 4.062 25 C 0.028 3.972 26 N -0.299 5.299 27 N -0.057 5.057 28 N -0.347 5.347 29 H 0.469 0.531 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.417 0.583 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.321 11.949 -16.859 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.131 0.869 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.336 3.664 7 O -0.438 6.438 8 C -0.254 4.254 9 S 0.037 5.963 10 C -0.761 4.761 11 H 0.091 0.909 12 C -0.221 4.221 13 N -0.547 5.547 14 Si 0.959 3.041 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.198 1.198 18 C -0.042 4.042 19 C 0.046 3.954 20 H 0.131 0.869 21 N -0.349 5.349 22 C 0.390 3.610 23 O -0.414 6.414 24 C -0.198 4.198 25 C -0.132 4.132 26 N -0.164 5.164 27 N -0.040 5.040 28 N -0.078 5.078 29 H 0.320 0.680 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -20.859 11.773 -16.033 28.823 hybrid contribution -1.152 0.105 0.092 1.160 sum -22.011 11.879 -15.941 29.660 Atomic orbital electron populations 1.21729 0.90997 1.03239 1.03690 1.22664 0.98154 0.99622 0.90492 0.86916 1.22604 0.81438 0.99131 0.98738 1.48247 1.12143 1.67163 1.07170 1.19612 0.84502 0.76477 0.85763 1.90701 1.83062 1.53980 1.16071 1.23170 0.94970 1.05167 1.02123 1.85005 1.09696 1.88383 1.13238 1.24055 0.99565 1.56333 0.96136 0.90940 1.27819 1.04269 0.92993 0.97005 1.70862 1.32702 1.44351 1.06813 0.82658 0.70579 0.77200 0.73696 1.18904 1.19920 1.19795 1.22653 0.99854 1.02905 0.78831 1.21971 0.94213 0.94857 0.84315 0.86887 1.45564 1.73938 1.11137 1.04258 1.16731 0.76198 0.86390 0.81647 1.90926 1.50275 1.14428 1.85750 1.22116 1.15852 0.84280 0.97515 1.24299 0.99680 1.00708 0.88495 1.75042 1.18113 0.96352 1.26852 1.78207 1.16346 1.21969 0.87452 1.45566 1.46216 1.06099 1.09919 0.67997 0.92028 0.90834 0.90366 0.90341 0.90577 0.87523 0.87880 0.92744 0.90111 0.91006 0.74456 0.76677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.31 71.98 0.67 0.07 16 2 C -0.09 -0.69 3.26 -9.33 -0.03 -0.72 16 3 H 0.11 0.48 8.00 -2.39 -0.02 0.46 16 4 C 0.10 1.79 6.38 86.93 0.55 2.34 16 5 N -0.61 -15.02 3.32 -811.33 -2.70 -17.72 16 6 C 0.55 20.16 7.87 87.66 0.69 20.85 16 7 O -0.56 -25.45 16.12 -3.03 -0.05 -25.50 16 8 C -0.10 -4.16 5.35 71.24 0.38 -3.78 16 9 S -0.19 -10.49 19.60 -56.49 -1.11 -11.59 16 10 C -0.61 -35.54 9.50 67.95 0.65 -34.89 16 11 H 0.07 3.98 7.80 -2.91 -0.02 3.96 16 12 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 13 N -0.91 -57.84 13.67 21.65 0.30 -57.55 16 14 Si 1.14 49.62 29.92 68.60 2.05 51.68 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 C 0.08 1.45 6.23 86.73 0.54 1.99 16 19 C 0.15 1.55 2.70 46.18 0.12 1.67 16 20 H 0.11 1.34 7.60 -2.38 -0.02 1.32 16 21 N -0.70 -4.15 5.13 -440.37 -2.26 -6.41 16 22 C 0.61 7.18 7.80 86.61 0.68 7.86 16 23 O -0.54 -10.80 16.65 -4.10 -0.07 -10.87 16 24 C -0.06 -0.67 7.17 40.40 0.29 -0.38 16 25 C 0.03 0.40 11.87 84.18 1.00 1.40 16 26 N -0.30 -5.41 12.35 -57.50 -0.71 -6.12 16 27 N -0.06 -0.85 13.35 37.02 0.49 -0.35 16 28 N -0.35 -2.41 6.97 -48.53 -0.34 -2.74 16 29 H 0.47 -1.06 8.32 -219.90 -1.83 -2.89 16 30 H 0.06 0.35 8.07 -2.39 -0.02 0.33 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.08 1.32 7.99 -2.39 -0.02 1.30 16 34 H 0.08 1.52 8.03 -2.39 -0.02 1.50 16 35 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 36 H 0.10 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.26 17.22 7.13 -92.70 -0.66 16.56 16 38 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.42 -0.55 7.78 -92.70 -0.72 -1.27 16 41 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -88.10 368.84 0.27 -87.83 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -1.35 Total: 3.48 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 6.01 Total: -4.13 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -5.21 Total: -90.89 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.12 Total: -36.37 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.68 kcal Atomic # 16 Polarization: -10.49 SS G_CDS: -1.11 Total: -11.59 kcal Total: -88.10 0.27 -87.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.492 kcal (2) G-P(sol) polarization free energy of solvation -88.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds