Wall clock time and date at job start Tue Mar 31 2020 23:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34769 * 125.65110 * 178.97664 * 5 4 2 7 7 O 1.21280 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00163 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46996 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99852 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99644 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00332 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46695 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47012 * 119.99628 * 14 12 10 17 17 H 1.48499 * 109.46755 * 240.00013 * 14 12 10 18 18 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 19 19 C 1.55118 * 104.94414 * 24.00601 * 18 5 4 20 20 H 1.09001 * 111.16500 * 205.13121 * 19 18 5 21 21 N 1.46502 * 110.93754 * 81.21163 * 19 18 5 22 22 C 1.34774 * 119.99854 * 92.96090 * 21 19 18 23 23 O 1.21557 * 120.00153 * 359.97438 * 22 21 19 24 24 C 1.47874 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.34547 * 126.05224 * 179.97438 * 24 22 21 26 26 C 1.30873 * 107.26874 * 179.97438 * 25 24 22 27 27 N 1.34583 * 107.62431 * 0.02562 * 26 25 24 28 28 H 0.97002 * 125.74273 * 180.02562 * 27 26 25 29 29 N 1.28849 * 108.50674 * 359.72438 * 27 26 25 30 30 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 33 33 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 34 34 H 1.09000 * 109.88772 * 100.02731 * 4 2 1 35 35 H 1.08998 * 109.47124 * 299.99840 * 8 6 5 36 36 H 1.08996 * 109.47052 * 59.99857 * 8 6 5 37 37 H 0.97000 * 119.99393 * 179.97438 * 13 12 10 38 38 H 1.09003 * 110.36619 * 142.96814 * 18 5 4 39 39 H 1.09004 * 110.37083 * 265.18300 * 18 5 4 40 40 H 0.96998 * 120.00200 * 272.96262 * 21 19 18 41 41 H 1.07996 * 126.18261 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7193 -2.5519 -2.6628 8 6 5.1678 -3.0986 -0.8816 9 16 5.9628 -4.1332 -2.1362 10 6 7.2629 -4.8343 -1.1755 11 1 7.3656 -4.5723 -0.1328 12 6 8.1550 -5.7234 -1.7587 13 7 8.0295 -6.0431 -3.0295 14 14 9.5329 -6.4673 -0.7401 15 1 9.4555 -5.9502 0.6498 16 1 9.3960 -7.9459 -0.7271 17 1 10.8427 -6.0965 -1.3335 18 6 3.4633 -1.2509 0.6855 19 6 2.0790 -0.7933 1.2152 20 1 2.1850 -0.1481 2.0874 21 7 1.2271 -1.9461 1.5179 22 6 1.2025 -2.4569 2.7648 23 8 1.8874 -1.9614 3.6382 24 6 0.3430 -3.6208 3.0702 25 7 0.2253 -4.2261 4.2661 26 6 -0.6279 -5.2080 4.1223 27 7 -1.0355 -5.2090 2.8397 28 1 -1.6702 -5.8288 2.4473 29 7 -0.4456 -4.2441 2.2223 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3634 0.5030 0.8962 33 1 1.3130 -1.4732 -1.5800 34 1 2.3741 -0.0991 -1.9979 35 1 5.8840 -2.3680 -0.5057 36 1 4.8229 -3.7256 -0.0595 37 1 8.6532 -6.6642 -3.4372 38 1 3.7960 -2.1446 1.2135 39 1 4.1946 -0.4504 0.7979 40 1 0.6808 -2.3418 0.8208 41 1 -0.9465 -5.8939 4.8932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071661763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:06 Heat of formation + Delta-G solvation = 26.683486 kcal Electronic energy + Delta-G solvation = -26712.185173 eV Core-core repulsion = 22755.644998 eV Total energy + Delta-G solvation = -3956.540175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.85034 -40.61268 -39.13307 -37.51524 -34.25100 -33.78983 -32.83984 -32.41064 -31.78339 -29.45697 -29.10998 -26.16063 -25.40575 -25.23332 -23.42166 -22.82888 -21.09470 -20.27012 -19.39568 -19.24895 -17.93363 -17.60060 -16.86358 -16.72720 -16.46003 -15.70070 -15.27716 -15.08294 -14.79670 -14.76695 -14.45098 -14.26259 -13.78753 -13.67414 -13.22468 -12.98188 -12.61915 -12.56425 -12.46033 -12.33170 -11.93355 -11.57416 -11.28380 -11.10519 -11.09113 -11.05203 -10.98932 -10.89567 -10.73391 -10.49711 -10.14847 -9.79193 -9.57855 -9.33868 -9.05645 -8.47780 -8.21706 -6.48626 -6.20255 -3.90597 0.96604 1.75040 2.18030 2.58270 2.90952 3.05263 3.08330 3.23185 3.28027 3.33363 3.62897 3.85826 4.03545 4.07521 4.22297 4.29404 4.48746 4.52612 4.91650 5.00283 5.07749 5.15061 5.20818 5.32643 5.41532 5.52360 5.54035 5.59659 5.63679 5.71546 5.77574 5.82526 5.88439 5.95677 6.12087 6.17415 6.27635 6.40976 7.05977 7.57364 7.61899 7.64579 7.86527 8.37655 8.56020 9.25474 10.87252 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.003156 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.074727 B = 8870.874506 C =10555.339572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.103 0.897 4 C 0.110 3.890 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.089 3.911 19 C 0.137 3.863 20 H 0.119 0.881 21 N -0.700 5.700 22 C 0.618 3.382 23 O -0.506 6.506 24 C 0.151 3.849 25 N -0.461 5.461 26 C 0.198 3.802 27 N -0.396 5.396 28 H 0.453 0.547 29 N -0.274 5.274 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.267 0.733 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.410 0.590 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.699 7.876 12.682 27.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.122 0.878 4 C -0.013 4.013 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.389 6.389 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.036 4.036 19 C 0.031 3.969 20 H 0.137 0.863 21 N -0.354 5.354 22 C 0.399 3.601 23 O -0.377 6.377 24 C -0.130 4.130 25 N -0.185 5.185 26 C -0.100 4.100 27 N -0.119 5.119 28 H 0.300 0.700 29 N -0.116 5.116 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.247 0.753 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -22.223 8.236 11.086 26.165 hybrid contribution 0.424 -1.298 1.623 2.121 sum -21.799 6.938 12.709 26.169 Atomic orbital electron populations 1.21719 0.93279 1.02337 1.02579 1.22580 0.97051 0.99929 0.93342 0.87849 1.21983 0.88336 0.94742 0.96280 1.48483 1.30762 1.46152 1.10889 1.20011 0.82688 0.77661 0.85801 1.90708 1.69852 1.62387 1.15958 1.23514 0.97840 1.02870 1.05532 1.85352 1.33699 1.52259 1.12116 1.22912 1.15257 1.31282 0.98730 0.90871 1.24987 0.97636 0.95682 0.95248 1.70036 1.36554 1.32895 1.10870 0.86121 0.80774 0.78775 0.79887 1.19552 1.20580 1.20526 1.22806 0.96757 1.02217 0.81827 1.22241 0.89174 0.86895 0.98582 0.86346 1.45637 1.46263 1.32841 1.10630 1.16255 0.80467 0.80556 0.82794 1.90853 1.41273 1.59186 1.46388 1.23787 1.00949 1.00663 0.87567 1.71318 1.16504 1.07175 1.23506 1.26779 0.95818 0.99265 0.88137 1.45134 1.33807 1.23809 1.09190 0.70023 1.74268 1.10689 1.01765 1.24831 0.92337 0.91661 0.91792 0.91371 0.91064 0.89227 0.89449 0.92273 0.89771 0.89868 0.75325 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.75 37.16 0.33 -0.54 16 2 C -0.11 -0.82 3.41 -88.79 -0.30 -1.13 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.11 1.22 6.46 -3.06 -0.02 1.20 16 5 N -0.63 -8.96 3.33 -170.38 -0.57 -9.53 16 6 C 0.55 10.79 7.87 -10.99 -0.09 10.70 16 7 O -0.52 -12.01 16.19 5.56 0.09 -11.92 16 8 C -0.15 -3.14 5.16 36.01 0.19 -2.95 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 10 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 14 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.09 1.03 6.39 -2.41 -0.02 1.02 16 19 C 0.14 1.27 3.20 -65.67 -0.21 1.06 16 20 H 0.12 1.05 7.54 -51.93 -0.39 0.65 16 21 N -0.70 -7.17 4.53 -52.55 -0.24 -7.41 16 22 C 0.62 7.94 7.83 -12.32 -0.10 7.84 16 23 O -0.51 -7.99 16.73 5.32 0.09 -7.90 16 24 C 0.15 1.82 7.96 -156.35 -1.24 0.58 16 25 N -0.46 -5.37 11.41 -12.36 -0.14 -5.51 16 26 C 0.20 1.22 13.14 -90.48 -1.19 0.03 16 27 N -0.40 -2.22 6.93 29.56 0.20 -2.02 16 28 H 0.45 0.56 8.96 -190.21 -1.71 -1.14 16 29 N -0.27 -2.63 11.98 32.08 0.38 -2.24 16 30 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.78 7.80 -51.93 -0.41 0.37 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.09 1.79 7.85 -51.92 -0.41 1.38 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.12 7.48 -51.93 -0.39 0.73 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.41 3.91 6.85 -40.82 -0.28 3.63 16 41 H 0.23 0.18 8.06 -52.49 -0.42 -0.24 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -40.82 366.86 -10.02 -50.84 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.41 Total: -1.60 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.46 Total: 4.59 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.38 Total: -52.44 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -40.82 -10.02 -50.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.527 kcal (2) G-P(sol) polarization free energy of solvation -40.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds