Wall clock time and date at job start Tue Mar 31 2020 23:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.34769 * 125.65110 * 178.97664 * 5 4 2 7 7 O 1.21280 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.50707 * 120.00163 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46996 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99852 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99732 * 0.02562 * 10 9 8 12 12 C 1.38795 * 120.00241 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99644 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00332 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46695 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47012 * 119.99628 * 14 12 10 17 17 H 1.48499 * 109.46755 * 240.00013 * 14 12 10 18 18 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 19 19 C 1.55118 * 104.94414 * 24.00601 * 18 5 4 20 20 H 1.09001 * 111.16500 * 205.13121 * 19 18 5 21 21 N 1.46502 * 110.93754 * 81.21163 * 19 18 5 22 22 C 1.34774 * 119.99854 * 92.96090 * 21 19 18 23 23 O 1.21557 * 120.00153 * 359.97438 * 22 21 19 24 24 C 1.47874 * 120.00275 * 180.02562 * 22 21 19 25 25 N 1.34547 * 126.05224 * 179.97438 * 24 22 21 26 26 C 1.30873 * 107.26874 * 179.97438 * 25 24 22 27 27 N 1.34583 * 107.62431 * 0.02562 * 26 25 24 28 28 H 0.97002 * 125.74273 * 180.02562 * 27 26 25 29 29 N 1.28849 * 108.50674 * 359.72438 * 27 26 25 30 30 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 33 33 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 34 34 H 1.09000 * 109.88772 * 100.02731 * 4 2 1 35 35 H 1.08998 * 109.47124 * 299.99840 * 8 6 5 36 36 H 1.08996 * 109.47052 * 59.99857 * 8 6 5 37 37 H 0.97000 * 119.99393 * 179.97438 * 13 12 10 38 38 H 1.09003 * 110.36619 * 142.96814 * 18 5 4 39 39 H 1.09004 * 110.37083 * 265.18300 * 18 5 4 40 40 H 0.96998 * 120.00200 * 272.96262 * 21 19 18 41 41 H 1.07996 * 126.18261 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 3.9923 -2.3811 -1.4936 7 8 3.7193 -2.5519 -2.6628 8 6 5.1678 -3.0986 -0.8816 9 16 5.9628 -4.1332 -2.1362 10 6 7.2629 -4.8343 -1.1755 11 1 7.3656 -4.5723 -0.1328 12 6 8.1550 -5.7234 -1.7587 13 7 8.0295 -6.0431 -3.0295 14 14 9.5329 -6.4673 -0.7401 15 1 9.4555 -5.9502 0.6498 16 1 9.3960 -7.9459 -0.7271 17 1 10.8427 -6.0965 -1.3335 18 6 3.4633 -1.2509 0.6855 19 6 2.0790 -0.7933 1.2152 20 1 2.1850 -0.1481 2.0874 21 7 1.2271 -1.9461 1.5179 22 6 1.2025 -2.4569 2.7648 23 8 1.8874 -1.9614 3.6382 24 6 0.3430 -3.6208 3.0702 25 7 0.2253 -4.2261 4.2661 26 6 -0.6279 -5.2080 4.1223 27 7 -1.0355 -5.2090 2.8397 28 1 -1.6702 -5.8288 2.4473 29 7 -0.4456 -4.2441 2.2223 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5246 -0.8837 32 1 -0.3634 0.5030 0.8962 33 1 1.3130 -1.4732 -1.5800 34 1 2.3741 -0.0991 -1.9979 35 1 5.8840 -2.3680 -0.5057 36 1 4.8229 -3.7256 -0.0595 37 1 8.6532 -6.6642 -3.4372 38 1 3.7960 -2.1446 1.2135 39 1 4.1946 -0.4504 0.7979 40 1 0.6808 -2.3418 0.8208 41 1 -0.9465 -5.8939 4.8932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071661763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:06 Heat of formation + Delta-G solvation = -4.332244 kcal Electronic energy + Delta-G solvation = -26713.530116 eV Core-core repulsion = 22755.644998 eV Total energy + Delta-G solvation = -3957.885118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.48638 -41.63065 -40.34889 -38.72834 -35.31689 -34.62263 -34.46592 -33.76343 -32.46418 -30.97372 -30.04742 -27.78773 -26.94384 -26.09055 -24.12068 -23.67891 -21.91947 -21.08625 -20.75005 -19.90048 -19.59640 -18.67348 -18.03006 -17.74424 -17.41965 -16.92273 -16.89071 -16.37914 -15.94457 -15.88282 -15.67654 -15.42811 -15.17790 -14.65127 -14.41222 -14.34426 -13.71397 -13.66330 -13.49016 -13.25873 -13.18479 -13.14715 -12.93647 -12.65650 -12.36968 -11.99201 -11.80656 -11.79742 -11.73104 -11.65011 -11.41582 -11.18895 -11.04726 -10.81826 -10.41460 -10.33406 -9.67936 -8.71589 -8.38428 -6.17115 0.21759 1.12608 1.20184 1.38563 1.41247 1.50886 1.54534 1.58058 1.97714 2.03687 2.19930 2.23592 2.95559 3.12562 3.16176 3.33106 3.43511 3.51501 3.74953 3.87239 4.03139 4.13451 4.17637 4.32808 4.39195 4.50031 4.55659 4.65169 4.74229 4.79220 4.86908 5.03082 5.10487 5.22231 5.23433 5.35114 5.38199 5.39104 5.90274 6.16342 6.22963 6.28802 6.86248 7.02854 7.04592 7.06368 8.71163 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010080 B = 0.003156 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.074727 B = 8870.874506 C =10555.339572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.131 0.869 4 C 0.103 3.897 5 N -0.612 5.612 6 C 0.549 3.451 7 O -0.561 6.561 8 C -0.122 4.122 9 S -0.141 6.141 10 C -0.549 4.549 11 H 0.078 0.922 12 C 0.017 3.983 13 N -0.909 5.909 14 Si 0.998 3.002 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.081 3.919 19 C 0.140 3.860 20 H 0.132 0.868 21 N -0.690 5.690 22 C 0.615 3.385 23 O -0.545 6.545 24 C 0.120 3.880 25 N -0.513 5.513 26 C 0.219 3.781 27 N -0.379 5.379 28 H 0.472 0.528 29 N -0.280 5.280 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.272 0.728 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.413 0.587 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.880 8.243 14.654 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.148 0.852 4 C -0.019 4.019 5 N -0.347 5.347 6 C 0.337 3.663 7 O -0.440 6.440 8 C -0.274 4.274 9 S 0.086 5.914 10 C -0.697 4.697 11 H 0.096 0.904 12 C -0.188 4.188 13 N -0.545 5.545 14 Si 0.820 3.180 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.043 4.043 19 C 0.035 3.965 20 H 0.149 0.851 21 N -0.343 5.343 22 C 0.398 3.602 23 O -0.420 6.420 24 C -0.159 4.159 25 N -0.239 5.239 26 C -0.078 4.078 27 N -0.105 5.105 28 H 0.324 0.676 29 N -0.123 5.123 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.251 0.749 41 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -23.471 8.619 13.061 28.209 hybrid contribution 0.625 -1.413 1.054 1.870 sum -22.846 7.206 14.115 27.805 Atomic orbital electron populations 1.21722 0.91838 1.02401 1.03703 1.22573 0.97998 1.00146 0.90055 0.85155 1.22280 0.86883 0.94664 0.98110 1.48356 1.30367 1.44276 1.11698 1.19625 0.82814 0.78457 0.85433 1.90685 1.71115 1.64373 1.17785 1.23314 0.98593 1.02196 1.03260 1.85455 1.35052 1.54477 1.16441 1.23209 1.15683 1.31862 0.98926 0.90403 1.26102 1.00383 0.95856 0.96502 1.70182 1.37855 1.33622 1.12870 0.84920 0.76928 0.77920 0.78280 1.18422 1.19660 1.19542 1.23081 0.99071 1.02298 0.79824 1.22335 0.87761 0.86783 0.99671 0.85079 1.45632 1.45839 1.32773 1.10008 1.16504 0.80120 0.80673 0.82919 1.90812 1.43044 1.60576 1.47520 1.23668 1.02354 1.01481 0.88446 1.71258 1.19086 1.09367 1.24152 1.27676 0.93421 0.97932 0.88780 1.45172 1.33208 1.22945 1.09175 0.67633 1.74176 1.10554 1.02511 1.25087 0.92875 0.90411 0.90763 0.91700 0.90901 0.87780 0.88733 0.91854 0.91530 0.87573 0.74886 0.70161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.75 71.98 0.63 -0.70 16 2 C -0.09 -1.09 3.41 -9.61 -0.03 -1.12 16 3 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 4 C 0.10 2.13 6.46 86.73 0.56 2.69 16 5 N -0.61 -17.13 3.33 -811.35 -2.70 -19.83 16 6 C 0.55 21.85 7.87 87.66 0.69 22.54 16 7 O -0.56 -27.01 16.19 -3.03 -0.05 -27.06 16 8 C -0.12 -5.32 5.16 71.24 0.37 -4.95 16 9 S -0.14 -8.15 20.57 -56.49 -1.16 -9.31 16 10 C -0.55 -32.51 9.50 67.95 0.65 -31.87 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 12 C 0.02 0.96 5.49 84.86 0.47 1.43 16 13 N -0.91 -56.54 13.22 21.65 0.29 -56.26 16 14 Si 1.00 44.75 29.55 68.60 2.03 46.78 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C 0.08 1.79 6.39 86.93 0.56 2.34 16 19 C 0.14 2.36 3.20 46.46 0.15 2.50 16 20 H 0.13 2.03 7.54 -2.39 -0.02 2.01 16 21 N -0.69 -13.61 4.53 -438.44 -1.99 -15.60 16 22 C 0.62 15.84 7.83 86.80 0.68 16.52 16 23 O -0.55 -17.46 16.73 -3.89 -0.07 -17.53 16 24 C 0.12 2.87 7.96 137.13 1.09 3.96 16 25 N -0.51 -11.57 11.41 -193.03 -2.20 -13.77 16 26 C 0.22 2.18 13.14 180.30 2.37 4.55 16 27 N -0.38 -3.45 6.93 -60.38 -0.42 -3.87 16 28 H 0.47 -0.07 8.96 -219.79 -1.97 -2.04 16 29 N -0.28 -5.09 11.98 -52.43 -0.63 -5.72 16 30 H 0.05 0.58 6.43 -2.39 -0.02 0.57 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.06 1.42 7.80 -2.39 -0.02 1.40 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 4.17 8.14 -2.40 -0.02 4.15 16 36 H 0.09 3.93 7.85 -2.40 -0.02 3.91 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.07 1.75 7.48 -2.39 -0.02 1.73 16 39 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.41 7.57 6.85 -92.71 -0.64 6.94 16 41 H 0.28 -0.70 8.06 -2.91 -0.02 -0.73 16 Total: -1.00 -93.61 366.86 -0.23 -93.84 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -1.51 Total: 10.43 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 8.17 Total: 17.89 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -7.65 Total: -115.05 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.11 Total: -44.59 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -93.61 -0.23 -93.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.511 kcal (2) G-P(sol) polarization free energy of solvation -93.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds