Wall clock time and date at job start Tue Mar 31 2020 23:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.88697 * 2 1 4 4 C 1.54910 * 111.00441 * 123.92594 * 2 1 3 5 5 N 1.47424 * 104.83424 * 155.08400 * 4 2 1 6 6 C 1.34775 * 125.64889 * 155.82136 * 5 4 2 7 7 O 1.21280 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99883 * 179.97438 * 6 5 4 9 9 S 1.80995 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00312 * 180.02562 * 9 8 6 11 11 H 1.08009 * 119.99330 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00410 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99789 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47693 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46866 * 120.00265 * 14 12 10 17 17 H 1.48495 * 109.47261 * 239.99708 * 14 12 10 18 18 C 1.47025 * 108.70376 * 335.87165 * 5 4 2 19 19 C 1.54327 * 107.27083 * 1.05985 * 18 5 4 20 20 H 1.08991 * 110.87400 * 140.62905 * 19 18 5 21 21 N 1.46498 * 110.71724 * 263.83247 * 19 18 5 22 22 C 1.34778 * 119.99891 * 268.51993 * 21 19 18 23 23 O 1.21554 * 120.00199 * 0.02562 * 22 21 19 24 24 C 1.47872 * 120.00180 * 180.02562 * 22 21 19 25 25 N 1.34553 * 126.04524 * 0.27195 * 24 22 21 26 26 C 1.30871 * 107.26845 * 180.15232 * 25 24 22 27 27 N 1.34583 * 107.62411 * 359.61805 * 26 25 24 28 28 H 0.97006 * 125.75024 * 180.25642 * 27 26 25 29 29 N 1.28854 * 108.50299 * 0.24507 * 27 26 25 30 30 H 1.09001 * 109.46910 * 183.87706 * 1 2 3 31 31 H 1.08997 * 109.46825 * 303.88080 * 1 2 3 32 32 H 1.09005 * 109.46741 * 63.88328 * 1 2 3 33 33 H 1.09000 * 110.36567 * 273.92132 * 4 2 1 34 34 H 1.09000 * 110.36885 * 36.13157 * 4 2 1 35 35 H 1.08993 * 109.47302 * 300.00145 * 8 6 5 36 36 H 1.08998 * 109.46943 * 60.00697 * 8 6 5 37 37 H 0.96993 * 120.00871 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.88166 * 241.64352 * 18 5 4 39 39 H 1.09000 * 109.88484 * 120.47231 * 18 5 4 40 40 H 0.97004 * 120.00550 * 88.52142 * 21 19 18 41 41 H 1.08002 * 126.19186 * 179.88999 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4271 -1.2434 0.7729 6 6 4.4481 -1.5607 1.5934 7 8 4.3016 -1.4988 2.7957 8 6 5.7716 -1.9936 1.0169 9 16 6.9287 -2.3485 2.3627 10 6 8.3486 -2.8161 1.4301 11 1 8.3096 -2.8165 0.3507 12 6 9.5172 -3.1839 2.0825 13 7 9.5646 -3.1839 3.3979 14 14 11.0222 -3.6803 1.0937 15 1 10.7115 -3.5977 -0.3561 16 1 12.1473 -2.7644 1.4113 17 1 11.4048 -5.0727 1.4399 18 6 3.4675 -1.2739 -0.6965 19 6 2.0862 -0.8074 -1.2026 20 1 2.1893 -0.1699 -2.0806 21 7 1.2269 -1.9568 -1.4970 22 6 1.2062 -2.4824 -2.7379 23 8 1.9009 -2.0031 -3.6127 24 6 0.3385 -3.6422 -3.0352 25 7 -0.4793 -4.2628 -2.1655 26 6 -1.0672 -5.2369 -2.8122 27 7 -0.6194 -5.2121 -4.0811 28 1 -0.8877 -5.8189 -4.7888 29 7 0.2257 -4.2464 -4.1977 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9228 33 1 2.1560 -0.1728 2.0836 34 1 1.4508 -1.6699 1.4030 35 1 5.6294 -2.8906 0.4144 36 1 6.1739 -1.1962 0.3922 37 1 10.3813 -3.4405 3.8538 38 1 3.6651 -2.2889 -1.0409 39 1 4.2426 -0.5993 -1.0602 40 1 0.6728 -2.3396 -0.7989 41 1 -1.7855 -5.9319 -2.4030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071661764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:09 Heat of formation + Delta-G solvation = 26.437421 kcal Electronic energy + Delta-G solvation = -26408.599542 eV Core-core repulsion = 22452.048696 eV Total energy + Delta-G solvation = -3956.550845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.93676 -40.62480 -39.16756 -37.51262 -34.47021 -33.80067 -32.61840 -32.39914 -31.86828 -29.44683 -29.16842 -26.15440 -25.41280 -25.24634 -23.40408 -22.92309 -21.13968 -20.26220 -19.55460 -19.27593 -17.74370 -17.54829 -16.88497 -16.79449 -16.46122 -15.81598 -15.35027 -15.22675 -14.77762 -14.68777 -14.51648 -14.19375 -13.82788 -13.70501 -13.15085 -12.88651 -12.67409 -12.65956 -12.39416 -12.30324 -11.89935 -11.61069 -11.29012 -11.21263 -11.06097 -11.04224 -10.99832 -10.95329 -10.72172 -10.59228 -10.23505 -9.77719 -9.58252 -9.30038 -9.04383 -8.49378 -8.19947 -6.46978 -6.18785 -3.89040 0.94137 1.61569 2.01462 2.69648 2.93466 2.98821 3.09126 3.24219 3.29031 3.34294 3.61370 3.65873 4.03019 4.17794 4.23536 4.31421 4.34932 4.56663 4.96334 5.03709 5.09948 5.16080 5.17196 5.36006 5.42066 5.46256 5.56822 5.60636 5.66170 5.72394 5.75142 5.81277 5.90419 5.97686 6.11040 6.19313 6.19825 6.41342 7.03708 7.49297 7.63242 7.66917 7.81480 8.38980 8.57740 9.26820 10.88766 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.002629 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.255429 B =10646.182099 C =12016.373924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.103 0.897 4 C 0.109 3.891 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.091 3.909 19 C 0.138 3.862 20 H 0.116 0.884 21 N -0.698 5.698 22 C 0.618 3.382 23 O -0.513 6.513 24 C 0.147 3.853 25 N -0.484 5.484 26 C 0.201 3.799 27 N -0.400 5.400 28 H 0.454 0.546 29 N -0.246 5.246 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.412 0.588 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.055 -0.479 -14.505 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.122 0.878 4 C -0.014 4.014 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.389 6.389 8 C -0.298 4.298 9 S 0.165 5.835 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.033 4.033 19 C 0.033 3.967 20 H 0.134 0.866 21 N -0.351 5.351 22 C 0.400 3.600 23 O -0.384 6.384 24 C -0.134 4.134 25 N -0.211 5.211 26 C -0.097 4.097 27 N -0.123 5.123 28 H 0.301 0.699 29 N -0.086 5.086 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -26.192 0.320 -13.243 29.351 hybrid contribution 0.482 -1.438 -2.128 2.613 sum -25.710 -1.119 -15.371 29.975 Atomic orbital electron populations 1.21660 0.93126 1.02407 1.02605 1.22721 0.96903 0.99964 0.93515 0.87834 1.22261 0.83604 0.98087 0.97470 1.48480 1.12148 1.69375 1.06320 1.20008 0.84012 0.76057 0.86032 1.90708 1.82331 1.51593 1.14253 1.23515 0.96273 1.03927 1.06073 1.85361 1.05070 1.87325 1.05701 1.22907 0.97966 1.52406 0.94854 0.90874 1.24987 0.98487 0.94980 0.95144 1.70023 1.28024 1.45237 1.07070 0.86117 0.81353 0.78243 0.79803 1.19578 1.20561 1.20589 1.22473 0.97347 1.02664 0.80858 1.22060 0.88707 0.86796 0.99128 0.86576 1.45667 1.45529 1.32821 1.11133 1.16238 0.80423 0.80452 0.82933 1.90867 1.41315 1.60136 1.46119 1.23764 1.01624 1.00960 0.87026 1.71303 1.10267 1.07877 1.31637 1.26642 1.01057 0.99276 0.82693 1.45285 1.30210 1.24169 1.12648 0.69936 1.74386 1.09183 1.00991 1.24050 0.92191 0.91611 0.91833 0.89869 0.91603 0.89368 0.89218 0.92264 0.90740 0.89896 0.75032 0.75223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.85 37.16 0.33 -0.53 16 2 C -0.11 -0.89 3.51 -88.47 -0.31 -1.20 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.11 1.23 6.33 -2.53 -0.02 1.21 16 5 N -0.63 -9.12 3.33 -170.52 -0.57 -9.68 16 6 C 0.55 10.86 7.87 -10.98 -0.09 10.77 16 7 O -0.51 -12.05 16.12 5.56 0.09 -11.96 16 8 C -0.15 -3.14 5.35 36.01 0.19 -2.95 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 11 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 12 C 0.07 2.12 5.49 -17.44 -0.10 2.03 16 13 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 14 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 C 0.09 1.10 6.23 -3.06 -0.02 1.08 16 19 C 0.14 1.30 3.10 -66.09 -0.20 1.09 16 20 H 0.12 1.07 7.55 -51.93 -0.39 0.68 16 21 N -0.70 -6.68 4.45 -52.96 -0.24 -6.92 16 22 C 0.62 7.40 7.83 -12.32 -0.10 7.30 16 23 O -0.51 -7.69 16.73 5.32 0.09 -7.60 16 24 C 0.15 1.60 7.96 -156.36 -1.24 0.35 16 25 N -0.48 -4.16 11.09 -12.36 -0.14 -4.30 16 26 C 0.20 0.89 13.14 -90.48 -1.19 -0.30 16 27 N -0.40 -1.93 6.93 29.56 0.20 -1.73 16 28 H 0.45 0.20 8.96 -190.20 -1.71 -1.50 16 29 N -0.25 -2.49 12.30 32.07 0.39 -2.09 16 30 H 0.06 0.36 6.48 -51.93 -0.34 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 3.53 6.82 -40.82 -0.28 3.25 16 41 H 0.23 -0.20 8.06 -52.49 -0.42 -0.62 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -40.50 367.67 -10.03 -50.53 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.46 Total: -2.52 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.45 Total: 3.63 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.39 Total: -50.53 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.50 -10.03 -50.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.967 kcal (2) G-P(sol) polarization free energy of solvation -40.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds