Wall clock time and date at job start Tue Mar 31 2020 23:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.88697 * 2 1 4 4 C 1.54910 * 111.00441 * 123.92594 * 2 1 3 5 5 N 1.47424 * 104.83424 * 155.08400 * 4 2 1 6 6 C 1.34775 * 125.64889 * 155.82136 * 5 4 2 7 7 O 1.21280 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99883 * 179.97438 * 6 5 4 9 9 S 1.80995 * 109.46959 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00312 * 180.02562 * 9 8 6 11 11 H 1.08009 * 119.99330 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31623 * 120.00410 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99789 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47693 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46866 * 120.00265 * 14 12 10 17 17 H 1.48495 * 109.47261 * 239.99708 * 14 12 10 18 18 C 1.47025 * 108.70376 * 335.87165 * 5 4 2 19 19 C 1.54327 * 107.27083 * 1.05985 * 18 5 4 20 20 H 1.08991 * 110.87400 * 140.62905 * 19 18 5 21 21 N 1.46498 * 110.71724 * 263.83247 * 19 18 5 22 22 C 1.34778 * 119.99891 * 268.51993 * 21 19 18 23 23 O 1.21554 * 120.00199 * 0.02562 * 22 21 19 24 24 C 1.47872 * 120.00180 * 180.02562 * 22 21 19 25 25 N 1.34553 * 126.04524 * 0.27195 * 24 22 21 26 26 C 1.30871 * 107.26845 * 180.15232 * 25 24 22 27 27 N 1.34583 * 107.62411 * 359.61805 * 26 25 24 28 28 H 0.97006 * 125.75024 * 180.25642 * 27 26 25 29 29 N 1.28854 * 108.50299 * 0.24507 * 27 26 25 30 30 H 1.09001 * 109.46910 * 183.87706 * 1 2 3 31 31 H 1.08997 * 109.46825 * 303.88080 * 1 2 3 32 32 H 1.09005 * 109.46741 * 63.88328 * 1 2 3 33 33 H 1.09000 * 110.36567 * 273.92132 * 4 2 1 34 34 H 1.09000 * 110.36885 * 36.13157 * 4 2 1 35 35 H 1.08993 * 109.47302 * 300.00145 * 8 6 5 36 36 H 1.08998 * 109.46943 * 60.00697 * 8 6 5 37 37 H 0.96993 * 120.00871 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.88166 * 241.64352 * 18 5 4 39 39 H 1.09000 * 109.88484 * 120.47231 * 18 5 4 40 40 H 0.97004 * 120.00550 * 88.52142 * 21 19 18 41 41 H 1.08002 * 126.19186 * 179.88999 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4271 -1.2434 0.7729 6 6 4.4481 -1.5607 1.5934 7 8 4.3016 -1.4988 2.7957 8 6 5.7716 -1.9936 1.0169 9 16 6.9287 -2.3485 2.3627 10 6 8.3486 -2.8161 1.4301 11 1 8.3096 -2.8165 0.3507 12 6 9.5172 -3.1839 2.0825 13 7 9.5646 -3.1839 3.3979 14 14 11.0222 -3.6803 1.0937 15 1 10.7115 -3.5977 -0.3561 16 1 12.1473 -2.7644 1.4113 17 1 11.4048 -5.0727 1.4399 18 6 3.4675 -1.2739 -0.6965 19 6 2.0862 -0.8074 -1.2026 20 1 2.1893 -0.1699 -2.0806 21 7 1.2269 -1.9568 -1.4970 22 6 1.2062 -2.4824 -2.7379 23 8 1.9009 -2.0031 -3.6127 24 6 0.3385 -3.6422 -3.0352 25 7 -0.4793 -4.2628 -2.1655 26 6 -1.0672 -5.2369 -2.8122 27 7 -0.6194 -5.2121 -4.0811 28 1 -0.8877 -5.8189 -4.7888 29 7 0.2257 -4.2464 -4.1977 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9228 33 1 2.1560 -0.1728 2.0836 34 1 1.4508 -1.6699 1.4030 35 1 5.6294 -2.8906 0.4144 36 1 6.1739 -1.1962 0.3922 37 1 10.3813 -3.4405 3.8538 38 1 3.6651 -2.2889 -1.0409 39 1 4.2426 -0.5993 -1.0602 40 1 0.6728 -2.3396 -0.7989 41 1 -1.7855 -5.9319 -2.4030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071661764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:09 Heat of formation + Delta-G solvation = -4.085403 kcal Electronic energy + Delta-G solvation = -26409.923110 eV Core-core repulsion = 22452.048696 eV Total energy + Delta-G solvation = -3957.874414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46989 -41.63168 -40.36493 -38.72685 -35.41726 -34.61343 -34.51555 -33.48825 -32.43933 -30.96008 -30.12668 -27.77692 -26.94720 -26.07957 -23.96175 -23.79375 -21.88890 -21.08718 -20.76192 -20.04415 -19.56568 -18.40662 -17.88583 -17.82034 -17.40935 -16.90790 -16.84933 -16.57847 -16.02068 -15.91841 -15.47959 -15.44757 -15.13596 -14.71391 -14.49029 -14.28009 -13.80451 -13.53789 -13.39873 -13.21606 -13.18665 -13.14720 -12.92683 -12.65233 -12.40773 -11.98714 -11.78485 -11.76580 -11.70272 -11.60187 -11.50480 -11.17736 -11.05046 -10.83605 -10.33221 -10.30518 -9.74899 -8.70085 -8.37005 -6.15543 0.26456 1.12777 1.21466 1.39692 1.42135 1.47177 1.52666 1.55701 2.03446 2.18820 2.21310 2.24946 2.96946 3.05154 3.13689 3.33319 3.44638 3.59339 3.76784 3.86732 4.04108 4.14175 4.20962 4.29385 4.40449 4.47852 4.56743 4.65390 4.73033 4.82198 4.89269 5.03849 5.13851 5.22319 5.24741 5.30789 5.39676 5.42680 5.91548 6.17829 6.27140 6.30238 6.87730 7.04200 7.05524 7.07015 8.72644 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.002629 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.255429 B =10646.182099 C =12016.373924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.117 0.883 4 C 0.101 3.899 5 N -0.613 5.613 6 C 0.549 3.451 7 O -0.560 6.560 8 C -0.123 4.123 9 S -0.143 6.143 10 C -0.547 4.547 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.085 3.915 19 C 0.145 3.855 20 H 0.125 0.875 21 N -0.685 5.685 22 C 0.616 3.384 23 O -0.552 6.552 24 C 0.121 3.879 25 N -0.510 5.510 26 C 0.222 3.778 27 N -0.384 5.384 28 H 0.472 0.528 29 N -0.280 5.280 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.272 0.728 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.418 0.582 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.815 -1.020 -16.435 33.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.135 0.865 4 C -0.020 4.020 5 N -0.348 5.348 6 C 0.338 3.662 7 O -0.439 6.439 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.695 4.695 11 H 0.097 0.903 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.821 3.179 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.039 4.039 19 C 0.040 3.960 20 H 0.143 0.857 21 N -0.338 5.338 22 C 0.399 3.601 23 O -0.427 6.427 24 C -0.159 4.159 25 N -0.237 5.237 26 C -0.075 4.075 27 N -0.109 5.109 28 H 0.323 0.677 29 N -0.121 5.121 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.257 0.743 41 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -28.024 -0.231 -15.210 31.887 hybrid contribution 0.836 -1.331 -1.587 2.234 sum -27.188 -1.563 -16.797 31.997 Atomic orbital electron populations 1.21655 0.91166 1.02954 1.03585 1.22683 0.98250 0.99638 0.90578 0.86484 1.22559 0.81831 0.98900 0.98759 1.48361 1.12170 1.67108 1.07165 1.19648 0.84475 0.76392 0.85735 1.90687 1.83098 1.54056 1.16034 1.23324 0.95773 1.04904 1.03440 1.85480 1.07662 1.87850 1.10627 1.23208 0.98436 1.52756 0.95095 0.90286 1.26116 1.02034 0.94542 0.96316 1.70173 1.29229 1.46118 1.09098 0.84903 0.76583 0.78058 0.78387 1.18339 1.19650 1.19727 1.22696 0.99659 1.02524 0.79037 1.22042 0.87288 0.86853 0.99861 0.85717 1.45594 1.45027 1.32523 1.10685 1.16502 0.80084 0.80618 0.82941 1.90831 1.43104 1.61541 1.47273 1.23566 1.02841 1.01518 0.87927 1.71273 1.10916 1.09308 1.32231 1.27636 0.99862 0.98136 0.81837 1.45277 1.28841 1.23139 1.13675 0.67730 1.74279 1.10867 1.02510 1.24471 0.91937 0.90476 0.90964 0.90666 0.90627 0.88381 0.87676 0.91871 0.91783 0.88960 0.74296 0.70039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 2 C -0.09 -1.26 3.51 -9.40 -0.03 -1.30 16 3 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 4 C 0.10 2.16 6.33 86.86 0.55 2.71 16 5 N -0.61 -17.53 3.33 -811.79 -2.70 -20.23 16 6 C 0.55 21.98 7.87 87.66 0.69 22.67 16 7 O -0.56 -27.06 16.12 -3.03 -0.05 -27.11 16 8 C -0.12 -5.33 5.35 71.24 0.38 -4.95 16 9 S -0.14 -8.26 20.57 -56.49 -1.16 -9.42 16 10 C -0.55 -32.32 9.50 67.95 0.65 -31.68 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.86 5.49 84.86 0.47 1.33 16 13 N -0.91 -56.75 13.22 21.65 0.29 -56.47 16 14 Si 1.00 44.78 29.55 68.60 2.03 46.81 16 15 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.08 1.96 6.23 86.73 0.54 2.50 16 19 C 0.14 2.50 3.10 46.18 0.14 2.64 16 20 H 0.13 2.08 7.55 -2.39 -0.02 2.06 16 21 N -0.69 -12.35 4.45 -439.75 -1.96 -14.30 16 22 C 0.62 14.53 7.83 86.79 0.68 15.21 16 23 O -0.55 -16.69 16.73 -3.89 -0.07 -16.76 16 24 C 0.12 2.55 7.96 137.13 1.09 3.64 16 25 N -0.51 -7.81 11.09 -193.03 -2.14 -9.95 16 26 C 0.22 1.27 13.14 180.30 2.37 3.64 16 27 N -0.38 -2.85 6.93 -60.38 -0.42 -3.27 16 28 H 0.47 -0.76 8.96 -219.79 -1.97 -2.73 16 29 N -0.28 -5.40 12.30 -52.44 -0.65 -6.04 16 30 H 0.06 0.58 6.48 -2.39 -0.02 0.57 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 1.79 8.04 -2.39 -0.02 1.77 16 34 H 0.08 1.50 7.98 -2.39 -0.02 1.48 16 35 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 36 H 0.11 4.18 8.14 -2.40 -0.02 4.16 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 38 H 0.06 1.66 8.04 -2.39 -0.02 1.64 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.42 6.56 6.82 -92.71 -0.63 5.93 16 41 H 0.28 -1.89 8.06 -2.91 -0.02 -1.92 16 Total: -1.00 -92.41 367.67 -0.17 -92.58 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -1.51 Total: 8.40 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 8.16 Total: 15.77 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -7.58 Total: -110.27 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.11 Total: -43.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -92.41 -0.17 -92.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.494 kcal (2) G-P(sol) polarization free energy of solvation -92.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds