Wall clock time and date at job start Tue Mar 31 2020 23:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64283 * 2 1 4 4 C 1.54328 * 110.71958 * 123.14093 * 2 1 3 5 5 N 1.47324 * 107.12022 * 140.43018 * 4 2 1 6 6 C 1.34771 * 125.61414 * 181.11146 * 5 4 2 7 7 O 1.21277 * 120.00055 * 0.20035 * 6 5 4 8 8 C 1.50704 * 119.99891 * 180.19432 * 6 5 4 9 9 S 1.80997 * 109.47293 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00224 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99521 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00019 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99825 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47115 * 60.00124 * 14 12 10 16 16 H 1.48503 * 109.47144 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47199 * 300.00370 * 14 12 10 18 18 C 1.47426 * 108.73348 * 1.29932 * 5 4 2 19 19 C 1.54901 * 104.83570 * 335.72058 * 18 5 4 20 20 H 1.09007 * 111.00384 * 278.93218 * 19 18 5 21 21 N 1.46505 * 111.00914 * 155.08406 * 19 18 5 22 22 C 1.34773 * 119.99977 * 92.80217 * 21 19 18 23 23 O 1.21554 * 119.99989 * 359.97438 * 22 21 19 24 24 C 1.47876 * 119.99823 * 180.02562 * 22 21 19 25 25 N 1.34547 * 126.04599 * 359.68250 * 24 22 21 26 26 C 1.30873 * 107.26671 * 179.87588 * 25 24 22 27 27 N 1.34583 * 107.62151 * 0.38718 * 26 25 24 28 28 H 0.97010 * 125.74124 * 179.73222 * 27 26 25 29 29 N 1.28840 * 108.50906 * 359.75508 * 27 26 25 30 30 H 1.09002 * 109.47153 * 180.69921 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.70112 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.70093 * 1 2 3 33 33 H 1.08999 * 109.88268 * 259.97599 * 4 2 1 34 34 H 1.08995 * 109.88243 * 21.13740 * 4 2 1 35 35 H 1.09004 * 109.46808 * 300.00258 * 8 6 5 36 36 H 1.09001 * 109.46820 * 59.99709 * 8 6 5 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.37129 * 216.87434 * 18 5 4 39 39 H 1.09002 * 110.45921 * 94.60333 * 18 5 4 40 40 H 0.96996 * 119.99738 * 272.80172 * 21 19 18 41 41 H 1.08003 * 126.18807 * 180.12363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2445 -1.5520 0.7365 6 6 3.9923 -2.3861 1.4858 7 8 3.7192 -2.5608 2.6544 8 6 5.1677 -3.1017 0.8715 9 16 5.9627 -4.1405 2.1225 10 6 7.2636 -4.8374 1.1599 11 1 7.3666 -4.5714 0.1182 12 6 8.1558 -5.7281 1.7403 13 7 8.0299 -6.0526 3.0098 14 14 9.5346 -6.4675 0.7196 15 1 10.4012 -5.3807 0.1972 16 1 10.3423 -7.3815 1.5667 17 1 8.9559 -7.2285 -0.4167 18 6 3.4633 -1.2486 -0.6896 19 6 2.0791 -0.7934 -1.2151 20 1 1.4452 -1.6511 -1.4403 21 7 2.2215 0.0737 -2.3874 22 6 2.1873 -0.4566 -3.6259 23 8 2.0388 -1.6544 -3.7703 24 6 2.3317 0.4185 -4.8091 25 7 2.4961 1.7538 -4.7910 26 6 2.5860 2.1511 -6.0347 27 7 2.4686 1.0638 -6.8192 28 1 2.4940 1.0594 -7.7889 29 7 2.3162 0.0301 -6.0654 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3634 0.5247 0.8837 33 1 2.3740 -0.0990 1.9979 34 1 1.3129 -1.4731 1.5801 35 1 4.8226 -3.7260 0.0472 36 1 5.8838 -2.3698 0.4979 37 1 8.6537 -6.6748 3.4154 38 1 3.7961 -2.1405 -1.2205 39 1 4.1936 -0.4471 -0.8009 40 1 2.3404 1.0294 -2.2721 41 1 2.7246 3.1680 -6.3708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071661765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:13 Heat of formation + Delta-G solvation = 23.904748 kcal Electronic energy + Delta-G solvation = -26133.506912 eV Core-core repulsion = 22176.846242 eV Total energy + Delta-G solvation = -3956.660670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.98230 -40.47455 -39.24274 -37.47957 -34.61055 -33.86436 -32.80243 -32.38343 -31.91418 -29.41378 -28.98771 -26.13168 -25.41599 -25.24605 -23.44615 -22.77427 -21.04214 -20.64871 -19.49829 -19.34028 -17.69847 -17.50540 -17.01371 -16.84241 -16.47404 -15.90931 -15.26069 -15.06205 -14.79183 -14.75223 -14.48809 -13.99552 -13.85801 -13.63286 -13.42631 -13.01628 -12.71274 -12.63235 -12.35800 -12.28672 -11.81315 -11.60026 -11.42555 -11.26198 -11.08381 -11.00385 -10.99631 -10.94058 -10.72414 -10.60975 -10.27712 -9.78664 -9.58731 -9.30506 -9.01405 -8.49995 -8.19377 -6.45490 -6.16989 -3.87419 0.90630 1.56801 1.96000 2.58567 2.94641 2.98016 3.10023 3.27574 3.29718 3.33004 3.55709 3.68568 4.03156 4.17091 4.25041 4.31047 4.34261 4.55148 4.91714 5.04632 5.08795 5.11795 5.18028 5.40610 5.44743 5.51427 5.55780 5.62232 5.65906 5.69388 5.75980 5.79157 5.91058 5.98138 6.08778 6.15810 6.20511 6.41191 6.99974 7.45316 7.63767 7.65856 7.78689 8.40031 8.57721 9.28226 10.90439 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.002604 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.576681 B =10751.224642 C =12819.901930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.092 0.908 4 C 0.115 3.885 5 N -0.625 5.625 6 C 0.551 3.449 7 O -0.513 6.513 8 C -0.148 4.148 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.091 3.909 19 C 0.137 3.863 20 H 0.114 0.886 21 N -0.697 5.697 22 C 0.617 3.383 23 O -0.508 6.508 24 C 0.147 3.853 25 N -0.485 5.485 26 C 0.200 3.800 27 N -0.400 5.400 28 H 0.454 0.546 29 N -0.245 5.245 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 22.212 -19.710 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.111 0.889 4 C -0.008 4.008 5 N -0.363 5.363 6 C 0.339 3.661 7 O -0.387 6.387 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.034 4.034 19 C 0.032 3.968 20 H 0.132 0.868 21 N -0.350 5.350 22 C 0.398 3.602 23 O -0.378 6.378 24 C -0.133 4.133 25 N -0.212 5.212 26 C -0.097 4.097 27 N -0.123 5.123 28 H 0.301 0.699 29 N -0.085 5.085 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.740 20.393 -17.568 31.181 hybrid contribution 1.447 0.644 -2.934 3.335 sum -14.293 21.038 -20.502 32.668 Atomic orbital electron populations 1.21771 0.93055 1.02809 1.02351 1.22517 0.97125 0.99734 0.93427 0.88929 1.21983 0.88287 0.94679 0.95838 1.48442 1.31059 1.46103 1.10675 1.20025 0.82656 0.77569 0.85801 1.90710 1.69803 1.62231 1.15958 1.23528 0.97777 1.02904 1.05639 1.85356 1.33619 1.52142 1.12214 1.22824 1.15267 1.31397 0.98777 0.90974 1.24982 0.97644 0.95666 0.95256 1.70009 1.36624 1.32731 1.10986 0.86228 0.80772 0.78889 0.79642 1.19957 1.20824 1.19907 1.22632 0.96863 1.01993 0.81961 1.22283 0.96787 0.94132 0.83635 0.86839 1.45464 1.73567 1.11971 1.04035 1.16261 0.77122 0.85737 0.81063 1.90897 1.47676 1.13834 1.85442 1.23758 1.07627 0.89668 0.92273 1.71289 1.19610 1.09532 1.20738 1.26635 1.00837 0.96210 0.86067 1.45288 1.50712 1.04561 1.11713 0.69904 1.74407 1.17867 1.13144 1.03079 0.91880 0.92037 0.91727 0.90955 0.90843 0.89152 0.89295 0.92160 0.89548 0.90887 0.75099 0.75235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.14 37.16 0.34 -0.63 16 2 C -0.11 -0.87 3.19 -88.78 -0.28 -1.16 16 3 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 4 C 0.12 1.34 6.49 -2.90 -0.02 1.33 16 5 N -0.62 -9.33 3.33 -170.28 -0.57 -9.90 16 6 C 0.55 11.03 7.87 -10.99 -0.09 10.95 16 7 O -0.51 -12.16 16.19 5.56 0.09 -12.07 16 8 C -0.15 -3.19 5.16 36.01 0.19 -3.00 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 11 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 12 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 13 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 14 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.09 1.10 6.38 -2.53 -0.02 1.09 16 19 C 0.14 1.35 2.87 -65.78 -0.19 1.16 16 20 H 0.11 1.28 7.45 -51.93 -0.39 0.90 16 21 N -0.70 -6.20 5.19 -52.66 -0.27 -6.47 16 22 C 0.62 7.22 7.83 -12.32 -0.10 7.12 16 23 O -0.51 -7.83 16.73 5.32 0.09 -7.74 16 24 C 0.15 1.51 7.96 -156.35 -1.24 0.27 16 25 N -0.49 -3.70 11.09 -12.36 -0.14 -3.84 16 26 C 0.20 0.72 13.14 -90.48 -1.19 -0.47 16 27 N -0.40 -1.71 6.93 29.57 0.20 -1.51 16 28 H 0.45 -0.01 8.96 -190.21 -1.71 -1.72 16 29 N -0.25 -2.38 12.30 32.08 0.39 -1.99 16 30 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 35 H 0.09 1.85 7.85 -51.91 -0.41 1.44 16 36 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 37 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 1.16 7.48 -51.93 -0.39 0.77 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.41 2.83 8.28 -40.82 -0.34 2.49 16 41 H 0.23 -0.40 8.06 -52.48 -0.42 -0.83 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -40.82 370.27 -10.07 -50.88 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -6.55 Total: -3.40 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -2.40 Total: 3.36 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.36 Total: -49.62 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.82 -10.07 -50.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.789 kcal (2) G-P(sol) polarization free energy of solvation -40.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds