Wall clock time and date at job start Tue Mar 31 2020 23:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64283 * 2 1 4 4 C 1.54328 * 110.71958 * 123.14093 * 2 1 3 5 5 N 1.47324 * 107.12022 * 140.43018 * 4 2 1 6 6 C 1.34771 * 125.61414 * 181.11146 * 5 4 2 7 7 O 1.21277 * 120.00055 * 0.20035 * 6 5 4 8 8 C 1.50704 * 119.99891 * 180.19432 * 6 5 4 9 9 S 1.80997 * 109.47293 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00224 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99521 * 359.97438 * 10 9 8 12 12 C 1.38791 * 120.00019 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00206 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99825 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47115 * 60.00124 * 14 12 10 16 16 H 1.48503 * 109.47144 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47199 * 300.00370 * 14 12 10 18 18 C 1.47426 * 108.73348 * 1.29932 * 5 4 2 19 19 C 1.54901 * 104.83570 * 335.72058 * 18 5 4 20 20 H 1.09007 * 111.00384 * 278.93218 * 19 18 5 21 21 N 1.46505 * 111.00914 * 155.08406 * 19 18 5 22 22 C 1.34773 * 119.99977 * 92.80217 * 21 19 18 23 23 O 1.21554 * 119.99989 * 359.97438 * 22 21 19 24 24 C 1.47876 * 119.99823 * 180.02562 * 22 21 19 25 25 N 1.34547 * 126.04599 * 359.68250 * 24 22 21 26 26 C 1.30873 * 107.26671 * 179.87588 * 25 24 22 27 27 N 1.34583 * 107.62151 * 0.38718 * 26 25 24 28 28 H 0.97010 * 125.74124 * 179.73222 * 27 26 25 29 29 N 1.28840 * 108.50906 * 359.75508 * 27 26 25 30 30 H 1.09002 * 109.47153 * 180.69921 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.70112 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.70093 * 1 2 3 33 33 H 1.08999 * 109.88268 * 259.97599 * 4 2 1 34 34 H 1.08995 * 109.88243 * 21.13740 * 4 2 1 35 35 H 1.09004 * 109.46808 * 300.00258 * 8 6 5 36 36 H 1.09001 * 109.46820 * 59.99709 * 8 6 5 37 37 H 0.96998 * 119.99779 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.37129 * 216.87434 * 18 5 4 39 39 H 1.09002 * 110.45921 * 94.60333 * 18 5 4 40 40 H 0.96996 * 119.99738 * 272.80172 * 21 19 18 41 41 H 1.08003 * 126.18807 * 180.12363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2445 -1.5520 0.7365 6 6 3.9923 -2.3861 1.4858 7 8 3.7192 -2.5608 2.6544 8 6 5.1677 -3.1017 0.8715 9 16 5.9627 -4.1405 2.1225 10 6 7.2636 -4.8374 1.1599 11 1 7.3666 -4.5714 0.1182 12 6 8.1558 -5.7281 1.7403 13 7 8.0299 -6.0526 3.0098 14 14 9.5346 -6.4675 0.7196 15 1 10.4012 -5.3807 0.1972 16 1 10.3423 -7.3815 1.5667 17 1 8.9559 -7.2285 -0.4167 18 6 3.4633 -1.2486 -0.6896 19 6 2.0791 -0.7934 -1.2151 20 1 1.4452 -1.6511 -1.4403 21 7 2.2215 0.0737 -2.3874 22 6 2.1873 -0.4566 -3.6259 23 8 2.0388 -1.6544 -3.7703 24 6 2.3317 0.4185 -4.8091 25 7 2.4961 1.7538 -4.7910 26 6 2.5860 2.1511 -6.0347 27 7 2.4686 1.0638 -6.8192 28 1 2.4940 1.0594 -7.7889 29 7 2.3162 0.0301 -6.0654 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5029 -0.8962 32 1 -0.3634 0.5247 0.8837 33 1 2.3740 -0.0990 1.9979 34 1 1.3129 -1.4731 1.5801 35 1 4.8226 -3.7260 0.0472 36 1 5.8838 -2.3698 0.4979 37 1 8.6537 -6.6748 3.4154 38 1 3.7961 -2.1405 -1.2205 39 1 4.1936 -0.4471 -0.8009 40 1 2.3404 1.0294 -2.2721 41 1 2.7246 3.1680 -6.3708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071661765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:12 Heat of formation + Delta-G solvation = -7.572025 kcal Electronic energy + Delta-G solvation = -26134.871847 eV Core-core repulsion = 22176.846242 eV Total energy + Delta-G solvation = -3958.025606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.46247 -41.51693 -40.42691 -38.72967 -35.54850 -34.61098 -34.50519 -33.72951 -32.43796 -30.96976 -29.94975 -27.77360 -26.95607 -26.11505 -23.87683 -23.65526 -21.87782 -21.41287 -20.80392 -19.92878 -19.62676 -18.35798 -18.00988 -17.82564 -17.38998 -16.90749 -16.82647 -16.63642 -16.00400 -15.87139 -15.66585 -15.28864 -14.75827 -14.68812 -14.54422 -14.39902 -14.28409 -13.62619 -13.29999 -13.20276 -13.17895 -13.10574 -12.88708 -12.66053 -12.39153 -12.18294 -11.77106 -11.74895 -11.74636 -11.59410 -11.52164 -11.15086 -11.07331 -10.83611 -10.35122 -10.31018 -9.76820 -8.70396 -8.36475 -6.15496 0.26718 1.13770 1.18374 1.36483 1.42372 1.45108 1.50944 1.54648 1.98213 2.19300 2.24817 2.26208 2.97222 3.01635 3.19508 3.31876 3.43458 3.61073 3.76490 3.83772 4.03504 4.09554 4.17764 4.20387 4.38498 4.44887 4.58630 4.69916 4.72812 4.83151 4.90380 4.98051 5.07173 5.16800 5.24110 5.32677 5.39100 5.40740 5.92756 6.17474 6.25544 6.29556 6.90043 7.03746 7.04369 7.06386 8.72690 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.002604 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.576681 B =10751.224642 C =12819.901930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.122 0.878 4 C 0.108 3.892 5 N -0.614 5.614 6 C 0.550 3.450 7 O -0.559 6.559 8 C -0.124 4.124 9 S -0.143 6.143 10 C -0.549 4.549 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.085 3.915 19 C 0.145 3.855 20 H 0.098 0.902 21 N -0.677 5.677 22 C 0.614 3.386 23 O -0.557 6.557 24 C 0.124 3.876 25 N -0.505 5.505 26 C 0.224 3.776 27 N -0.385 5.385 28 H 0.472 0.528 29 N -0.283 5.283 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.426 0.574 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.255 25.166 -22.505 37.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.140 0.860 4 C -0.015 4.015 5 N -0.349 5.349 6 C 0.338 3.662 7 O -0.437 6.437 8 C -0.275 4.275 9 S 0.084 5.916 10 C -0.697 4.697 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.040 4.040 19 C 0.039 3.961 20 H 0.116 0.884 21 N -0.330 5.330 22 C 0.397 3.603 23 O -0.431 6.431 24 C -0.156 4.156 25 N -0.232 5.232 26 C -0.073 4.073 27 N -0.110 5.110 28 H 0.322 0.678 29 N -0.125 5.125 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.265 0.735 41 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -15.755 23.432 -20.423 34.847 hybrid contribution 1.350 -0.109 -2.198 2.582 sum -14.405 23.323 -22.621 35.541 Atomic orbital electron populations 1.21770 0.91693 1.02607 1.03645 1.22482 0.97992 1.00096 0.90142 0.85982 1.22289 0.86787 0.94615 0.97765 1.48305 1.30714 1.44366 1.11526 1.19672 0.82808 0.78307 0.85431 1.90687 1.71078 1.64174 1.17788 1.23333 0.98467 1.02262 1.03409 1.85478 1.35070 1.54421 1.16602 1.23145 1.15573 1.31922 0.99072 0.90249 1.26126 1.00480 0.95851 0.96544 1.70169 1.37908 1.33458 1.13039 0.85005 0.76964 0.78209 0.77820 1.18557 1.20023 1.18886 1.22850 0.98955 1.02114 0.80034 1.22085 0.95049 0.94390 0.84596 0.88427 1.45265 1.72436 1.12362 1.02965 1.16579 0.76190 0.85385 0.82115 1.90863 1.50084 1.15949 1.86245 1.23447 1.09617 0.90665 0.91858 1.71261 1.20888 1.08080 1.23017 1.27673 0.97375 0.97607 0.84667 1.45281 1.49448 1.03742 1.12514 0.67757 1.74300 1.18957 1.15660 1.03556 0.92946 0.90849 0.90262 0.90365 0.91447 0.88252 0.87662 0.91861 0.91058 0.88881 0.73498 0.69850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.14 71.98 0.66 -0.91 16 2 C -0.09 -1.20 3.19 -9.61 -0.03 -1.23 16 3 H 0.12 1.05 8.00 -2.39 -0.02 1.03 16 4 C 0.11 2.39 6.49 86.67 0.56 2.95 16 5 N -0.61 -18.11 3.33 -811.05 -2.70 -20.81 16 6 C 0.55 22.47 7.87 87.66 0.69 23.16 16 7 O -0.56 -27.48 16.19 -3.02 -0.05 -27.53 16 8 C -0.12 -5.43 5.16 71.24 0.37 -5.06 16 9 S -0.14 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.55 -32.71 9.50 67.95 0.65 -32.07 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 12 C 0.01 0.88 5.49 84.86 0.47 1.34 16 13 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 14 Si 1.00 45.00 29.55 68.60 2.03 47.03 16 15 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 18 C 0.08 1.99 6.38 86.85 0.55 2.54 16 19 C 0.14 2.69 2.87 46.38 0.13 2.82 16 20 H 0.10 2.21 7.45 -2.38 -0.02 2.20 16 21 N -0.68 -11.03 5.19 -438.79 -2.28 -13.31 16 22 C 0.61 14.21 7.83 86.80 0.68 14.88 16 23 O -0.56 -17.73 16.73 -3.88 -0.06 -17.79 16 24 C 0.12 2.42 7.96 137.13 1.09 3.51 16 25 N -0.51 -6.40 11.09 -193.02 -2.14 -8.54 16 26 C 0.22 0.77 13.14 180.30 2.37 3.14 16 27 N -0.38 -2.32 6.93 -60.37 -0.42 -2.74 16 28 H 0.47 -1.30 8.96 -219.79 -1.97 -3.27 16 29 N -0.28 -5.22 12.30 -52.43 -0.64 -5.87 16 30 H 0.05 0.72 8.12 -2.39 -0.02 0.70 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.61 7.80 -2.39 -0.02 1.59 16 35 H 0.10 4.15 7.85 -2.39 -0.02 4.13 16 36 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.07 1.92 7.48 -2.39 -0.02 1.91 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.43 4.73 8.28 -92.71 -0.77 3.96 16 41 H 0.29 -2.64 8.06 -2.91 -0.02 -2.67 16 Total: -1.00 -94.41 370.27 -0.61 -95.02 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -1.64 Total: 5.80 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 8.19 Total: 15.07 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -7.90 Total: -108.11 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.11 Total: -45.33 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -94.41 -0.61 -95.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.447 kcal (2) G-P(sol) polarization free energy of solvation -94.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds