Wall clock time and date at job start Tue Mar 31 2020 23:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.78039 * 2 1 4 4 C 1.54340 * 110.85014 * 236.92520 * 2 1 3 5 5 N 1.47014 * 107.26648 * 219.67002 * 4 2 1 6 6 C 1.34777 * 125.64925 * 178.84816 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72596 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71903 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99664 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47114 * 120.00091 * 14 12 10 17 17 H 1.48505 * 109.46890 * 239.99700 * 14 12 10 18 18 C 1.47429 * 108.70337 * 358.58996 * 5 4 2 19 19 C 1.54904 * 104.83171 * 24.35501 * 18 5 4 20 20 H 1.09000 * 111.00631 * 81.10633 * 19 18 5 21 21 N 1.46503 * 111.00373 * 204.91838 * 19 18 5 22 22 C 1.34780 * 119.99677 * 273.54517 * 21 19 18 23 23 O 1.21556 * 120.00256 * 0.02562 * 22 21 19 24 24 C 1.47876 * 119.99833 * 179.97438 * 22 21 19 25 25 N 1.34553 * 126.04545 * 359.69386 * 24 22 21 26 26 C 1.30869 * 107.26701 * 179.86476 * 25 24 22 27 27 N 1.34585 * 107.62373 * 0.38884 * 26 25 24 28 28 H 0.97000 * 125.75256 * 179.72702 * 27 26 25 29 29 N 1.28846 * 108.50445 * 359.75357 * 27 26 25 30 30 H 1.09001 * 109.47319 * 296.76009 * 1 2 3 31 31 H 1.09001 * 109.47233 * 56.76550 * 1 2 3 32 32 H 1.09001 * 109.46767 * 176.76652 * 1 2 3 33 33 H 1.09005 * 109.98637 * 100.20143 * 4 2 1 34 34 H 1.08999 * 109.78096 * 339.03302 * 4 2 1 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 0.97005 * 119.99806 * 179.97438 * 13 12 10 38 38 H 1.09004 * 110.36746 * 143.19032 * 18 5 4 39 39 H 1.08996 * 110.36514 * 265.40409 * 18 5 4 40 40 H 0.96998 * 120.00364 * 93.53978 * 21 19 18 41 41 H 1.07996 * 126.19105 * 180.12214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7871 -1.2086 5 7 3.2445 -1.5507 -0.7389 6 6 3.9923 -2.3837 -1.4896 7 8 3.7193 -2.5564 -2.6585 8 6 5.1678 -3.1002 -0.8764 9 16 5.9637 -4.1359 -2.1295 10 6 7.2635 -4.8356 -1.1676 11 1 7.3657 -4.5725 -0.1251 12 6 8.1555 -5.7258 -1.7494 13 7 8.0300 -6.0476 -3.0195 14 14 9.5331 -6.4682 -0.7294 15 1 9.4557 -5.9488 0.6596 16 1 9.3961 -7.9468 -0.7139 17 1 10.8431 -6.0987 -1.3233 18 6 3.4633 -1.2497 0.6876 19 6 2.0790 -0.7954 1.2138 20 1 1.4455 -1.6535 1.4383 21 7 2.2214 0.0698 2.3875 22 6 2.3159 -0.4733 3.6174 23 8 2.2834 -1.6808 3.7529 24 6 2.4603 0.4000 4.8021 25 7 2.5166 1.7443 4.7926 26 6 2.6428 2.1366 6.0347 27 7 2.6729 1.0359 6.8086 28 1 2.7633 1.0243 7.7743 29 7 2.5619 -0.0001 6.0506 30 1 -0.3634 0.4627 0.9176 31 1 -0.3634 0.5632 -0.8596 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3815 -0.0971 -1.9965 34 1 1.3156 -1.4688 -1.5828 35 1 4.8228 -3.7259 -0.0532 36 1 5.8839 -2.3689 -0.5017 37 1 8.6536 -6.6695 -3.4261 38 1 3.7960 -2.1425 1.2171 39 1 4.1946 -0.4491 0.7985 40 1 2.2479 1.0333 2.2794 41 1 2.7145 3.1585 6.3765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071661766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:16 Heat of formation + Delta-G solvation = 24.003791 kcal Electronic energy + Delta-G solvation = -26158.434833 eV Core-core repulsion = 22201.778457 eV Total energy + Delta-G solvation = -3956.656376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.97751 -40.48479 -39.23917 -37.47914 -34.61173 -33.86450 -32.79845 -32.38194 -31.91075 -29.41639 -28.97966 -26.13483 -25.41648 -25.24762 -23.44235 -22.79117 -21.02776 -20.63753 -19.51137 -19.31352 -17.70730 -17.47814 -17.01746 -16.83432 -16.48404 -15.91587 -15.28220 -15.05914 -14.77807 -14.74900 -14.48651 -13.99330 -13.86612 -13.64139 -13.42567 -13.02348 -12.70844 -12.63075 -12.36380 -12.27607 -11.81223 -11.57994 -11.42954 -11.25762 -11.07864 -11.03029 -10.97194 -10.92919 -10.70968 -10.60264 -10.27260 -9.76524 -9.59714 -9.30335 -9.02787 -8.49474 -8.18248 -6.45197 -6.17170 -3.87261 0.91260 1.57243 1.96506 2.59046 2.95489 2.98575 3.10195 3.25501 3.30319 3.35591 3.56134 3.69221 4.01599 4.17183 4.24937 4.31415 4.34047 4.54707 4.91692 5.04654 5.09320 5.10790 5.18119 5.41121 5.44315 5.51378 5.56793 5.63138 5.66219 5.69829 5.75636 5.79133 5.90764 5.98585 6.08949 6.16101 6.21399 6.42500 7.00391 7.45735 7.64482 7.66277 7.79371 8.40715 8.58037 9.28453 10.90372 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002642 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.756944 B =10593.764377 C =12726.998817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.093 0.907 4 C 0.115 3.885 5 N -0.624 5.624 6 C 0.551 3.449 7 O -0.513 6.513 8 C -0.148 4.148 9 S -0.061 6.061 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.090 3.910 19 C 0.139 3.861 20 H 0.111 0.889 21 N -0.698 5.698 22 C 0.616 3.384 23 O -0.506 6.506 24 C 0.147 3.853 25 N -0.485 5.485 26 C 0.200 3.800 27 N -0.400 5.400 28 H 0.454 0.546 29 N -0.245 5.245 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.412 0.588 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.476 22.208 19.773 33.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.111 0.889 4 C -0.008 4.008 5 N -0.362 5.362 6 C 0.340 3.660 7 O -0.387 6.387 8 C -0.298 4.298 9 S 0.166 5.834 10 C -0.681 4.681 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.035 4.035 19 C 0.033 3.967 20 H 0.129 0.871 21 N -0.351 5.351 22 C 0.397 3.603 23 O -0.377 6.377 24 C -0.133 4.133 25 N -0.212 5.212 26 C -0.098 4.098 27 N -0.123 5.123 28 H 0.301 0.699 29 N -0.085 5.085 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.249 0.751 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -15.823 20.388 17.627 31.253 hybrid contribution 1.423 0.630 2.918 3.307 sum -14.400 21.018 20.545 32.729 Atomic orbital electron populations 1.21774 0.92996 1.02848 1.02382 1.22511 0.97109 0.99743 0.93361 0.88892 1.21931 0.88383 0.94681 0.95829 1.48375 1.31092 1.46113 1.10662 1.20026 0.82656 0.77570 0.85787 1.90710 1.69810 1.62250 1.15939 1.23526 0.97763 1.02900 1.05639 1.85357 1.33680 1.52275 1.12109 1.22905 1.15191 1.31238 0.98753 0.90866 1.24988 0.97670 0.95695 0.95260 1.70031 1.36548 1.32835 1.10934 0.86116 0.80729 0.78814 0.79849 1.19591 1.20558 1.20601 1.22647 0.96854 1.02077 0.81896 1.22263 0.96741 0.94056 0.83619 0.87131 1.45480 1.74035 1.11049 1.04554 1.16267 0.77090 0.85888 0.81007 1.90902 1.48315 1.13215 1.85298 1.23762 1.07735 0.89349 0.92473 1.71288 1.19804 1.09634 1.20462 1.26630 1.00826 0.96013 0.86290 1.45289 1.51107 1.03875 1.12010 0.69907 1.74408 1.17757 1.13319 1.02992 0.91981 0.91710 0.91852 0.90987 0.90877 0.89126 0.89300 0.92278 0.89464 0.90919 0.75100 0.75244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.16 37.16 0.34 -0.60 16 2 C -0.11 -0.86 3.16 -88.78 -0.28 -1.14 16 3 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 4 C 0.12 1.34 6.48 -3.06 -0.02 1.32 16 5 N -0.62 -9.38 3.33 -170.51 -0.57 -9.95 16 6 C 0.55 11.09 7.87 -10.98 -0.09 11.00 16 7 O -0.51 -12.19 16.19 5.56 0.09 -12.10 16 8 C -0.15 -3.20 5.16 36.01 0.19 -3.02 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.53 -15.63 9.50 30.94 0.29 -15.34 16 11 H 0.07 2.06 7.80 -52.48 -0.41 1.65 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.70 13.22 55.49 0.73 -25.96 16 14 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.09 1.12 6.38 -2.53 -0.02 1.10 16 19 C 0.14 1.37 2.77 -65.78 -0.18 1.18 16 20 H 0.11 1.24 7.63 -51.93 -0.40 0.84 16 21 N -0.70 -6.21 5.23 -52.66 -0.28 -6.49 16 22 C 0.62 7.25 7.83 -12.31 -0.10 7.15 16 23 O -0.51 -7.86 16.83 5.32 0.09 -7.77 16 24 C 0.15 1.52 7.96 -156.35 -1.24 0.28 16 25 N -0.49 -3.71 11.09 -12.36 -0.14 -3.85 16 26 C 0.20 0.73 13.14 -90.48 -1.19 -0.46 16 27 N -0.40 -1.74 6.93 29.56 0.20 -1.53 16 28 H 0.45 0.02 8.96 -190.21 -1.71 -1.69 16 29 N -0.25 -2.40 12.30 32.08 0.39 -2.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 35 H 0.09 1.87 7.85 -51.92 -0.41 1.46 16 36 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.09 1.21 7.48 -51.93 -0.39 0.82 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.41 2.81 8.22 -40.82 -0.34 2.48 16 41 H 0.23 -0.40 8.06 -52.49 -0.42 -0.82 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -40.93 370.33 -10.06 -50.99 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.55 Total: -3.48 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.39 Total: 3.52 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.35 Total: -49.78 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.93 -10.06 -50.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.996 kcal (2) G-P(sol) polarization free energy of solvation -40.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds