Wall clock time and date at job start Tue Mar 31 2020 23:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.78039 * 2 1 4 4 C 1.54340 * 110.85014 * 236.92520 * 2 1 3 5 5 N 1.47014 * 107.26648 * 219.67002 * 4 2 1 6 6 C 1.34777 * 125.64925 * 178.84816 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72596 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71903 * 6 5 4 9 9 S 1.81002 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.76198 * 100.00092 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99664 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47114 * 120.00091 * 14 12 10 17 17 H 1.48505 * 109.46890 * 239.99700 * 14 12 10 18 18 C 1.47429 * 108.70337 * 358.58996 * 5 4 2 19 19 C 1.54904 * 104.83171 * 24.35501 * 18 5 4 20 20 H 1.09000 * 111.00631 * 81.10633 * 19 18 5 21 21 N 1.46503 * 111.00373 * 204.91838 * 19 18 5 22 22 C 1.34780 * 119.99677 * 273.54517 * 21 19 18 23 23 O 1.21556 * 120.00256 * 0.02562 * 22 21 19 24 24 C 1.47876 * 119.99833 * 179.97438 * 22 21 19 25 25 N 1.34553 * 126.04545 * 359.69386 * 24 22 21 26 26 C 1.30869 * 107.26701 * 179.86476 * 25 24 22 27 27 N 1.34585 * 107.62373 * 0.38884 * 26 25 24 28 28 H 0.97000 * 125.75256 * 179.72702 * 27 26 25 29 29 N 1.28846 * 108.50445 * 359.75357 * 27 26 25 30 30 H 1.09001 * 109.47319 * 296.76009 * 1 2 3 31 31 H 1.09001 * 109.47233 * 56.76550 * 1 2 3 32 32 H 1.09001 * 109.46767 * 176.76652 * 1 2 3 33 33 H 1.09005 * 109.98637 * 100.20143 * 4 2 1 34 34 H 1.08999 * 109.78096 * 339.03302 * 4 2 1 35 35 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 36 36 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 37 37 H 0.97005 * 119.99806 * 179.97438 * 13 12 10 38 38 H 1.09004 * 110.36746 * 143.19032 * 18 5 4 39 39 H 1.08996 * 110.36514 * 265.40409 * 18 5 4 40 40 H 0.96998 * 120.00364 * 93.53978 * 21 19 18 41 41 H 1.07996 * 126.19105 * 180.12214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7871 -1.2086 5 7 3.2445 -1.5507 -0.7389 6 6 3.9923 -2.3837 -1.4896 7 8 3.7193 -2.5564 -2.6585 8 6 5.1678 -3.1002 -0.8764 9 16 5.9637 -4.1359 -2.1295 10 6 7.2635 -4.8356 -1.1676 11 1 7.3657 -4.5725 -0.1251 12 6 8.1555 -5.7258 -1.7494 13 7 8.0300 -6.0476 -3.0195 14 14 9.5331 -6.4682 -0.7294 15 1 9.4557 -5.9488 0.6596 16 1 9.3961 -7.9468 -0.7139 17 1 10.8431 -6.0987 -1.3233 18 6 3.4633 -1.2497 0.6876 19 6 2.0790 -0.7954 1.2138 20 1 1.4455 -1.6535 1.4383 21 7 2.2214 0.0698 2.3875 22 6 2.3159 -0.4733 3.6174 23 8 2.2834 -1.6808 3.7529 24 6 2.4603 0.4000 4.8021 25 7 2.5166 1.7443 4.7926 26 6 2.6428 2.1366 6.0347 27 7 2.6729 1.0359 6.8086 28 1 2.7633 1.0243 7.7743 29 7 2.5619 -0.0001 6.0506 30 1 -0.3634 0.4627 0.9176 31 1 -0.3634 0.5632 -0.8596 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3815 -0.0971 -1.9965 34 1 1.3156 -1.4688 -1.5828 35 1 4.8228 -3.7259 -0.0532 36 1 5.8839 -2.3689 -0.5017 37 1 8.6536 -6.6695 -3.4261 38 1 3.7960 -2.1425 1.2171 39 1 4.1946 -0.4491 0.7985 40 1 2.2479 1.0333 2.2794 41 1 2.7145 3.1585 6.3765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071661766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:15 Heat of formation + Delta-G solvation = -7.611903 kcal Electronic energy + Delta-G solvation = -26159.805792 eV Core-core repulsion = 22201.778457 eV Total energy + Delta-G solvation = -3958.027335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.46187 -41.53528 -40.42751 -38.73462 -35.55875 -34.61727 -34.50673 -33.72353 -32.43893 -30.98055 -29.94753 -27.78249 -26.95775 -26.12495 -23.88064 -23.66854 -21.86680 -21.41443 -20.80078 -19.91423 -19.63923 -18.35793 -17.99858 -17.84887 -17.38886 -16.91957 -16.83411 -16.65223 -16.02231 -15.87717 -15.65484 -15.29031 -14.77469 -14.68673 -14.55185 -14.41067 -14.29013 -13.62432 -13.30469 -13.20270 -13.17865 -13.09905 -12.92857 -12.64667 -12.37311 -12.17869 -11.75763 -11.74524 -11.71922 -11.59989 -11.51422 -11.18080 -11.08365 -10.83754 -10.35649 -10.31783 -9.77338 -8.70875 -8.37401 -6.16130 0.26914 1.13816 1.18182 1.36468 1.39408 1.44906 1.50351 1.56066 1.98034 2.19655 2.24031 2.25895 2.96476 3.01236 3.18800 3.30353 3.43212 3.61115 3.76311 3.83311 4.03373 4.08950 4.17852 4.19794 4.38040 4.44440 4.58206 4.69741 4.72682 4.83939 4.90386 4.98631 5.07707 5.17396 5.24124 5.32928 5.39206 5.41460 5.92825 6.17372 6.24521 6.29914 6.90202 7.03177 7.03820 7.06472 8.72280 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.002642 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.756944 B =10593.764377 C =12726.998817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.122 0.878 4 C 0.107 3.893 5 N -0.614 5.614 6 C 0.550 3.450 7 O -0.559 6.559 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.547 4.547 11 H 0.079 0.921 12 C 0.015 3.985 13 N -0.909 5.909 14 Si 1.000 3.000 15 H -0.260 1.260 16 H -0.272 1.272 17 H -0.270 1.270 18 C 0.084 3.916 19 C 0.147 3.853 20 H 0.097 0.903 21 N -0.678 5.678 22 C 0.613 3.387 23 O -0.556 6.556 24 C 0.124 3.876 25 N -0.505 5.505 26 C 0.224 3.776 27 N -0.385 5.385 28 H 0.471 0.529 29 N -0.284 5.284 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.426 0.574 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 25.158 22.524 37.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.140 0.860 4 C -0.015 4.015 5 N -0.349 5.349 6 C 0.338 3.662 7 O -0.437 6.437 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.695 4.695 11 H 0.097 0.903 12 C -0.190 4.190 13 N -0.546 5.546 14 Si 0.821 3.179 15 H -0.184 1.184 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.040 4.040 19 C 0.040 3.960 20 H 0.115 0.885 21 N -0.331 5.331 22 C 0.396 3.604 23 O -0.431 6.431 24 C -0.156 4.156 25 N -0.232 5.232 26 C -0.073 4.073 27 N -0.110 5.110 28 H 0.322 0.678 29 N -0.125 5.125 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.265 0.735 41 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -15.999 23.421 20.436 34.959 hybrid contribution 1.378 -0.123 2.194 2.593 sum -14.621 23.298 22.630 35.618 Atomic orbital electron populations 1.21776 0.91489 1.02713 1.03733 1.22479 0.98081 1.00048 0.89975 0.85978 1.22249 0.86873 0.94621 0.97791 1.48236 1.30771 1.44388 1.11465 1.19663 0.82799 0.78317 0.85425 1.90687 1.71067 1.64179 1.17732 1.23330 0.98469 1.02258 1.03417 1.85468 1.35100 1.54506 1.16444 1.23201 1.15548 1.31817 0.98958 0.90328 1.26128 1.00481 0.95876 0.96552 1.70181 1.37869 1.33562 1.12962 0.84895 0.76848 0.77883 0.78247 1.18384 1.19734 1.19522 1.22855 0.99050 1.02042 0.80031 1.22076 0.94888 0.94389 0.84605 0.88545 1.45281 1.72847 1.11494 1.03457 1.16592 0.76154 0.85538 0.82071 1.90868 1.50735 1.15340 1.86125 1.23451 1.09713 0.90353 0.92060 1.71260 1.21118 1.08119 1.22735 1.27673 0.97287 0.97472 0.84879 1.45282 1.49864 1.03086 1.12775 0.67769 1.74301 1.18845 1.15862 1.03499 0.90701 0.90206 0.92866 0.90429 0.91408 0.88301 0.87761 0.91854 0.91172 0.89113 0.73466 0.69837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.16 71.98 0.66 -0.83 16 2 C -0.09 -1.17 3.16 -9.60 -0.03 -1.20 16 3 H 0.12 1.04 8.00 -2.39 -0.02 1.02 16 4 C 0.11 2.38 6.48 86.74 0.56 2.94 16 5 N -0.61 -18.28 3.33 -811.78 -2.70 -20.98 16 6 C 0.55 22.63 7.87 87.66 0.69 23.32 16 7 O -0.56 -27.53 16.19 -3.02 -0.05 -27.58 16 8 C -0.12 -5.49 5.16 71.24 0.37 -5.12 16 9 S -0.14 -8.32 20.57 -56.49 -1.16 -9.48 16 10 C -0.55 -32.75 9.50 67.95 0.65 -32.10 16 11 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 12 C 0.01 0.85 5.49 84.86 0.47 1.32 16 13 N -0.91 -57.19 13.22 21.65 0.29 -56.90 16 14 Si 1.00 45.25 29.55 68.60 2.03 47.28 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 C 0.08 2.03 6.38 86.85 0.55 2.59 16 19 C 0.15 2.72 2.77 46.38 0.13 2.85 16 20 H 0.10 2.15 7.63 -2.39 -0.02 2.13 16 21 N -0.68 -11.06 5.23 -438.78 -2.29 -13.35 16 22 C 0.61 14.27 7.83 86.79 0.68 14.95 16 23 O -0.56 -17.83 16.83 -3.89 -0.07 -17.90 16 24 C 0.12 2.43 7.96 137.13 1.09 3.53 16 25 N -0.51 -6.41 11.09 -193.03 -2.14 -8.56 16 26 C 0.22 0.78 13.14 180.30 2.37 3.15 16 27 N -0.38 -2.38 6.93 -60.38 -0.42 -2.80 16 28 H 0.47 -1.22 8.96 -219.80 -1.97 -3.19 16 29 N -0.28 -5.28 12.30 -52.43 -0.64 -5.93 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.70 8.07 -2.39 -0.02 0.68 16 33 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 1.61 7.77 -2.39 -0.02 1.59 16 35 H 0.10 4.18 7.85 -2.39 -0.02 4.17 16 36 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 37 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 38 H 0.07 1.96 7.48 -2.38 -0.02 1.95 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.43 4.70 8.22 -92.71 -0.76 3.93 16 41 H 0.29 -2.64 8.06 -2.91 -0.02 -2.66 16 Total: -1.00 -94.70 370.33 -0.62 -95.32 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -1.64 Total: 5.48 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 8.18 Total: 15.39 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -7.91 Total: -108.51 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.11 Total: -45.48 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -94.70 -0.62 -95.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071661766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.707 kcal (2) G-P(sol) polarization free energy of solvation -94.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds