Wall clock time and date at job start Tue Mar 31 2020 23:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.77969 * 2 1 4 4 C 1.54331 * 110.85181 * 236.92689 * 2 1 3 5 5 N 1.47020 * 107.26684 * 219.67467 * 4 2 1 6 6 C 1.34778 * 125.64916 * 178.84957 * 5 4 2 7 7 O 1.21554 * 120.00199 * 359.71588 * 6 5 4 8 8 C 1.47872 * 120.00180 * 179.71750 * 6 5 4 9 9 N 1.34553 * 126.04524 * 0.27195 * 8 6 5 10 10 C 1.30871 * 107.26845 * 180.15232 * 9 8 6 11 11 N 1.34583 * 107.62411 * 359.61805 * 10 9 8 12 12 H 0.97006 * 125.75024 * 180.25642 * 11 10 9 13 13 N 1.28854 * 108.50299 * 0.24507 * 11 10 9 14 14 C 1.47427 * 108.70594 * 358.58641 * 5 4 2 15 15 C 1.54915 * 104.82907 * 24.35265 * 14 5 4 16 16 H 1.09001 * 111.00516 * 204.91751 * 15 14 5 17 17 N 1.46506 * 111.00114 * 81.06887 * 15 14 5 18 18 C 1.34772 * 119.99872 * 86.45078 * 17 15 14 19 19 O 1.21289 * 120.00254 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99953 * 179.97438 * 18 17 15 21 21 S 1.81004 * 109.47094 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99790 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00457 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99875 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00007 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99976 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46905 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46982 * 120.00109 * 26 24 22 29 29 H 1.48501 * 109.47129 * 240.00463 * 26 24 22 30 30 H 1.08999 * 109.47188 * 296.76469 * 1 2 3 31 31 H 1.08994 * 109.47010 * 56.76486 * 1 2 3 32 32 H 1.09000 * 109.46907 * 176.76641 * 1 2 3 33 33 H 1.08997 * 109.99467 * 100.19771 * 4 2 1 34 34 H 1.09007 * 109.77764 * 339.03018 * 4 2 1 35 35 H 1.08002 * 126.19186 * 179.88999 * 10 9 8 36 36 H 1.08990 * 110.37323 * 143.19407 * 14 5 4 37 37 H 1.08997 * 110.36834 * 265.52106 * 14 5 4 38 38 H 0.96994 * 119.99685 * 266.45044 * 17 15 14 39 39 H 1.08996 * 109.47449 * 300.00289 * 20 18 17 40 40 H 1.09000 * 109.46864 * 60.00736 * 20 18 17 41 41 H 0.97002 * 119.99853 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7870 -1.2086 5 7 3.2445 -1.5508 -0.7388 6 6 3.9923 -2.3837 -1.4895 7 8 3.7187 -2.5569 -2.6611 8 6 5.1456 -3.0869 -0.8879 9 7 5.5530 -2.9896 0.3908 10 6 6.6028 -3.7597 0.5238 11 7 6.8377 -4.3377 -0.6687 12 1 7.5535 -4.9625 -0.8645 13 7 5.9516 -3.9216 -1.5065 14 6 3.4633 -1.2498 0.6877 15 6 2.0789 -0.7954 1.2139 16 1 2.1849 -0.1517 2.0871 17 7 1.2270 -1.9487 1.5146 18 6 1.2971 -2.5413 2.7230 19 8 2.0650 -2.1195 3.5618 20 6 0.4204 -3.7274 3.0326 21 16 0.7444 -4.2927 4.7213 22 6 -0.3808 -5.6456 4.8121 23 1 -1.0007 -5.8905 3.9623 24 6 -0.4697 -6.3974 5.9756 25 7 0.2861 -6.0993 7.0111 26 14 -1.6631 -7.8313 6.0721 27 1 -2.3917 -7.9565 4.7842 28 1 -0.9114 -9.0838 6.3388 29 1 -2.6346 -7.5936 7.1699 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5632 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 2.3815 -0.0971 -1.9964 34 1 1.3155 -1.4688 -1.5828 35 1 7.1743 -3.9083 1.4280 36 1 3.7959 -2.1425 1.2171 37 1 4.1931 -0.4479 0.7986 38 1 0.6127 -2.2858 0.8440 39 1 -0.6267 -3.4390 2.9410 40 1 0.6381 -4.5329 2.3314 41 1 0.2236 -6.6244 7.8243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072522273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:37 Heat of formation + Delta-G solvation = 30.628857 kcal Electronic energy + Delta-G solvation = -26918.109772 eV Core-core repulsion = 22961.740680 eV Total energy + Delta-G solvation = -3956.369091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.71962 -40.54320 -39.01608 -37.57437 -34.29796 -33.60964 -32.46498 -32.41650 -31.61419 -29.97879 -28.11349 -27.32239 -25.48549 -24.49676 -23.21356 -22.76654 -20.92122 -20.08071 -19.87133 -18.86355 -17.90342 -17.11600 -16.86522 -16.59286 -16.33520 -15.84490 -15.48663 -15.03177 -14.80887 -14.74550 -14.40230 -13.99269 -13.74634 -13.32866 -13.13560 -12.93684 -12.70802 -12.60441 -12.53901 -12.19889 -11.94496 -11.52802 -11.24982 -11.07581 -11.03665 -11.01517 -10.96914 -10.75393 -10.55134 -10.43818 -10.01662 -9.80435 -9.40680 -9.10320 -9.06140 -8.67171 -8.23277 -6.49545 -6.22409 -3.92228 1.12948 1.85305 2.17826 2.76631 3.01932 3.08771 3.16419 3.21016 3.27883 3.32770 3.71260 3.75995 4.10710 4.20214 4.33038 4.40003 4.56231 4.58567 4.96678 5.08296 5.13078 5.19420 5.30022 5.41493 5.45598 5.54743 5.61601 5.65224 5.71458 5.82424 5.86905 5.90427 5.94570 6.00788 6.15265 6.20573 6.43912 6.65205 7.16696 7.59789 7.62002 7.70485 7.95884 8.35196 8.61736 9.23472 10.85029 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003116 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.841769 B = 8982.590142 C =10436.305439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.100 0.900 4 C 0.112 3.888 5 N -0.597 5.597 6 C 0.631 3.369 7 O -0.522 6.522 8 C 0.150 3.850 9 N -0.476 5.476 10 C 0.203 3.797 11 N -0.401 5.401 12 H 0.453 0.547 13 N -0.251 5.251 14 C 0.087 3.913 15 C 0.137 3.863 16 H 0.112 0.888 17 N -0.727 5.727 18 C 0.535 3.465 19 O -0.514 6.514 20 C -0.154 4.154 21 S -0.058 6.058 22 C -0.535 4.535 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.917 3.083 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.826 10.453 -16.008 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.010 4.010 5 N -0.331 5.331 6 C 0.415 3.585 7 O -0.396 6.396 8 C -0.130 4.130 9 N -0.202 5.202 10 C -0.095 4.095 11 N -0.124 5.124 12 H 0.299 0.701 13 N -0.091 5.091 14 C -0.037 4.037 15 C 0.031 3.969 16 H 0.130 0.870 17 N -0.382 5.382 18 C 0.321 3.679 19 O -0.388 6.388 20 C -0.304 4.304 21 S 0.169 5.831 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.688 11.107 -15.511 21.868 hybrid contribution -1.135 -2.173 -1.016 2.654 sum 9.553 8.934 -16.527 21.077 Atomic orbital electron populations 1.21715 0.92981 1.02469 1.02760 1.22568 0.97260 0.99749 0.93383 0.88130 1.22117 0.87439 0.94614 0.96820 1.48041 1.29604 1.43300 1.12183 1.15802 0.79915 0.78371 0.84432 1.90834 1.69820 1.63667 1.15261 1.23607 0.99908 1.00817 0.88715 1.71466 1.10712 1.21772 1.16281 1.26777 0.96376 0.93817 0.92517 1.45279 1.24162 1.34967 1.07946 0.70065 1.74331 1.01703 1.13418 1.19645 1.23148 0.97027 1.03777 0.79711 1.22046 0.89247 0.87933 0.97694 0.87024 1.45975 1.43383 1.32815 1.15986 1.20277 0.82938 0.83690 0.80964 1.90704 1.38078 1.63589 1.46384 1.23532 1.01587 0.97882 1.07442 1.85348 1.54610 1.38046 1.05116 1.22922 1.25990 1.16687 1.02739 0.90934 1.24975 0.96185 0.97655 0.94691 1.70023 1.37715 1.39142 1.03430 0.86137 0.80182 0.81042 0.78267 1.19623 1.20598 1.20538 0.91325 0.91916 0.92173 0.90760 0.90801 0.75153 0.86976 0.90282 0.76696 0.89259 0.89444 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.72 37.16 0.32 -0.65 16 2 C -0.11 -0.84 3.41 -88.78 -0.30 -1.15 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 1.05 6.47 -3.06 -0.02 1.03 16 5 N -0.60 -7.19 3.33 -171.61 -0.57 -7.76 16 6 C 0.63 9.27 7.86 -12.32 -0.10 9.17 16 7 O -0.52 -9.00 17.41 5.32 0.09 -8.90 16 8 C 0.15 2.07 7.79 -156.36 -1.22 0.85 16 9 N -0.48 -5.81 8.47 -12.36 -0.10 -5.91 16 10 C 0.20 1.61 13.14 -90.48 -1.19 0.42 16 11 N -0.40 -3.05 6.93 29.56 0.20 -2.84 16 12 H 0.45 1.37 8.96 -190.20 -1.71 -0.34 16 13 N -0.25 -3.15 12.30 32.07 0.39 -2.76 16 14 C 0.09 1.02 5.83 -2.52 -0.01 1.00 16 15 C 0.14 1.49 3.07 -65.77 -0.20 1.29 16 16 H 0.11 1.28 7.73 -51.93 -0.40 0.88 16 17 N -0.73 -9.32 4.69 -51.72 -0.24 -9.56 16 18 C 0.54 9.56 7.85 -10.99 -0.09 9.47 16 19 O -0.51 -10.97 15.61 5.55 0.09 -10.89 16 20 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 21 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 22 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 23 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 26 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 6.36 -51.93 -0.33 0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 35 H 0.23 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.11 1.63 6.14 -51.93 -0.32 1.31 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.36 6.88 -40.82 -0.28 4.08 16 39 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -39.33 363.72 -9.91 -49.24 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.37 Total: 0.80 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.39 Total: 5.72 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.42 Total: -54.01 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: 0.18 Total: -19.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.33 -9.91 -49.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.873 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds