Wall clock time and date at job start Tue Mar 31 2020 23:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.77969 * 2 1 4 4 C 1.54331 * 110.85181 * 236.92689 * 2 1 3 5 5 N 1.47020 * 107.26684 * 219.67467 * 4 2 1 6 6 C 1.34778 * 125.64916 * 178.84957 * 5 4 2 7 7 O 1.21554 * 120.00199 * 359.71588 * 6 5 4 8 8 C 1.47872 * 120.00180 * 179.71750 * 6 5 4 9 9 N 1.34553 * 126.04524 * 0.27195 * 8 6 5 10 10 C 1.30871 * 107.26845 * 180.15232 * 9 8 6 11 11 N 1.34583 * 107.62411 * 359.61805 * 10 9 8 12 12 H 0.97006 * 125.75024 * 180.25642 * 11 10 9 13 13 N 1.28854 * 108.50299 * 0.24507 * 11 10 9 14 14 C 1.47427 * 108.70594 * 358.58641 * 5 4 2 15 15 C 1.54915 * 104.82907 * 24.35265 * 14 5 4 16 16 H 1.09001 * 111.00516 * 204.91751 * 15 14 5 17 17 N 1.46506 * 111.00114 * 81.06887 * 15 14 5 18 18 C 1.34772 * 119.99872 * 86.45078 * 17 15 14 19 19 O 1.21289 * 120.00254 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99953 * 179.97438 * 18 17 15 21 21 S 1.81004 * 109.47094 * 180.02562 * 20 18 17 22 22 C 1.76199 * 99.99790 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00457 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99875 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00007 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99976 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46905 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.46982 * 120.00109 * 26 24 22 29 29 H 1.48501 * 109.47129 * 240.00463 * 26 24 22 30 30 H 1.08999 * 109.47188 * 296.76469 * 1 2 3 31 31 H 1.08994 * 109.47010 * 56.76486 * 1 2 3 32 32 H 1.09000 * 109.46907 * 176.76641 * 1 2 3 33 33 H 1.08997 * 109.99467 * 100.19771 * 4 2 1 34 34 H 1.09007 * 109.77764 * 339.03018 * 4 2 1 35 35 H 1.08002 * 126.19186 * 179.88999 * 10 9 8 36 36 H 1.08990 * 110.37323 * 143.19407 * 14 5 4 37 37 H 1.08997 * 110.36834 * 265.52106 * 14 5 4 38 38 H 0.96994 * 119.99685 * 266.45044 * 17 15 14 39 39 H 1.08996 * 109.47449 * 300.00289 * 20 18 17 40 40 H 1.09000 * 109.46864 * 60.00736 * 20 18 17 41 41 H 0.97002 * 119.99853 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7870 -1.2086 5 7 3.2445 -1.5508 -0.7388 6 6 3.9923 -2.3837 -1.4895 7 8 3.7187 -2.5569 -2.6611 8 6 5.1456 -3.0869 -0.8879 9 7 5.5530 -2.9896 0.3908 10 6 6.6028 -3.7597 0.5238 11 7 6.8377 -4.3377 -0.6687 12 1 7.5535 -4.9625 -0.8645 13 7 5.9516 -3.9216 -1.5065 14 6 3.4633 -1.2498 0.6877 15 6 2.0789 -0.7954 1.2139 16 1 2.1849 -0.1517 2.0871 17 7 1.2270 -1.9487 1.5146 18 6 1.2971 -2.5413 2.7230 19 8 2.0650 -2.1195 3.5618 20 6 0.4204 -3.7274 3.0326 21 16 0.7444 -4.2927 4.7213 22 6 -0.3808 -5.6456 4.8121 23 1 -1.0007 -5.8905 3.9623 24 6 -0.4697 -6.3974 5.9756 25 7 0.2861 -6.0993 7.0111 26 14 -1.6631 -7.8313 6.0721 27 1 -2.3917 -7.9565 4.7842 28 1 -0.9114 -9.0838 6.3388 29 1 -2.6346 -7.5936 7.1699 30 1 -0.3633 0.4628 0.9176 31 1 -0.3633 0.5632 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 2.3815 -0.0971 -1.9964 34 1 1.3155 -1.4688 -1.5828 35 1 7.1743 -3.9083 1.4280 36 1 3.7959 -2.1425 1.2171 37 1 4.1931 -0.4479 0.7986 38 1 0.6127 -2.2858 0.8440 39 1 -0.6267 -3.4390 2.9410 40 1 0.6381 -4.5329 2.3314 41 1 0.2236 -6.6244 7.8243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072522273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:37 Heat of formation + Delta-G solvation = 1.701635 kcal Electronic energy + Delta-G solvation = -26919.364150 eV Core-core repulsion = 22961.740680 eV Total energy + Delta-G solvation = -3957.623470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.50954 -41.56220 -40.28192 -38.70986 -35.32148 -34.59441 -34.54482 -33.36416 -32.42667 -31.26870 -29.33955 -28.10666 -27.63541 -25.34404 -23.97752 -23.70292 -22.08442 -20.99207 -20.78754 -19.86360 -19.63354 -18.18810 -17.87674 -17.64231 -17.49196 -16.87724 -16.84122 -16.60374 -16.25966 -15.84267 -15.59170 -15.26123 -14.82410 -14.58152 -14.46588 -14.18813 -13.68334 -13.63240 -13.44869 -13.32605 -13.14830 -12.99318 -12.91281 -12.61868 -12.31202 -11.97187 -11.79174 -11.77813 -11.67806 -11.53759 -11.39377 -11.14991 -10.89732 -10.85147 -10.26116 -10.22472 -9.68757 -8.63393 -8.34176 -6.10734 0.21885 1.09146 1.28068 1.40091 1.40859 1.47293 1.58647 1.65432 2.06508 2.15918 2.26065 2.31708 2.92080 3.00005 3.32197 3.34988 3.51058 3.56900 3.86847 3.98775 3.99828 4.21457 4.30501 4.45481 4.51831 4.54428 4.64503 4.74619 4.80970 4.82497 4.90961 5.08293 5.11252 5.20092 5.31795 5.42719 5.43043 5.54490 5.90132 6.17609 6.20713 6.49640 6.74043 7.03400 7.07770 7.26790 8.75084 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003116 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.841769 B = 8982.590142 C =10436.305439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.127 0.873 4 C 0.106 3.894 5 N -0.592 5.592 6 C 0.621 3.379 7 O -0.560 6.560 8 C 0.123 3.877 9 N -0.507 5.507 10 C 0.217 3.783 11 N -0.381 5.381 12 H 0.472 0.528 13 N -0.277 5.277 14 C 0.093 3.907 15 C 0.133 3.867 16 H 0.110 0.890 17 N -0.703 5.703 18 C 0.540 3.460 19 O -0.553 6.553 20 C -0.133 4.133 21 S -0.138 6.138 22 C -0.549 4.549 23 H 0.078 0.922 24 C 0.017 3.983 25 N -0.909 5.909 26 Si 0.995 3.005 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.272 1.272 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.278 0.722 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.410 0.590 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.244 10.631 -16.918 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.145 0.855 4 C -0.016 4.016 5 N -0.324 5.324 6 C 0.407 3.593 7 O -0.437 6.437 8 C -0.156 4.156 9 N -0.234 5.234 10 C -0.080 4.080 11 N -0.106 5.106 12 H 0.323 0.677 13 N -0.119 5.119 14 C -0.031 4.031 15 C 0.027 3.973 16 H 0.128 0.872 17 N -0.358 5.358 18 C 0.326 3.674 19 O -0.430 6.430 20 C -0.284 4.284 21 S 0.089 5.911 22 C -0.697 4.697 23 H 0.097 0.903 24 C -0.188 4.188 25 N -0.545 5.545 26 Si 0.817 3.183 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.198 1.198 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.293 0.707 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.247 0.753 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.108 11.300 -16.455 22.375 hybrid contribution -0.849 -2.183 -0.786 2.471 sum 9.259 9.116 -17.242 21.590 Atomic orbital electron populations 1.21737 0.91984 1.02590 1.03607 1.22557 0.97879 1.00094 0.90316 0.85485 1.22358 0.86592 0.94744 0.97883 1.48110 1.29667 1.42545 1.12096 1.16089 0.80404 0.78607 0.84245 1.90791 1.71074 1.65182 1.16672 1.23548 1.00518 1.01966 0.89580 1.71436 1.12542 1.23637 1.15788 1.27627 0.95101 0.91775 0.93476 1.45252 1.23552 1.34489 1.07330 0.67712 1.74230 1.02629 1.13807 1.21198 1.23063 0.97683 1.03076 0.79252 1.22230 0.88816 0.87198 0.99016 0.87170 1.45740 1.43074 1.32597 1.14349 1.19896 0.82222 0.83248 0.82048 1.90694 1.39662 1.64655 1.48007 1.23383 1.03248 0.99113 1.02662 1.85449 1.55494 1.38803 1.11310 1.23244 1.26137 1.17044 1.03273 0.90340 1.26046 0.97994 1.00633 0.94109 1.70170 1.39517 1.40654 1.04182 0.84965 0.77621 0.76963 0.78773 1.18385 1.19924 1.19763 0.91439 0.89991 0.92574 0.89648 0.90865 0.70662 0.89557 0.88872 0.75281 0.87343 0.88413 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.72 71.98 0.63 -0.90 16 2 C -0.09 -1.13 3.41 -9.60 -0.03 -1.16 16 3 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.11 1.79 6.47 86.73 0.56 2.35 16 5 N -0.59 -13.89 3.33 -815.14 -2.71 -16.60 16 6 C 0.62 18.53 7.86 86.79 0.68 19.22 16 7 O -0.56 -19.78 17.41 -3.89 -0.07 -19.84 16 8 C 0.12 3.44 7.79 137.13 1.07 4.51 16 9 N -0.51 -12.17 8.47 -193.03 -1.63 -13.81 16 10 C 0.22 3.10 13.14 180.30 2.37 5.47 16 11 N -0.38 -5.32 6.93 -60.38 -0.42 -5.74 16 12 H 0.47 2.05 8.96 -219.79 -1.97 0.08 16 13 N -0.28 -6.94 12.30 -52.44 -0.65 -7.59 16 14 C 0.09 2.10 5.83 86.86 0.51 2.60 16 15 C 0.13 2.68 3.07 46.38 0.14 2.82 16 16 H 0.11 2.37 7.73 -2.39 -0.02 2.35 16 17 N -0.70 -17.14 4.69 -435.93 -2.05 -19.19 16 18 C 0.54 19.07 7.85 87.66 0.69 19.76 16 19 O -0.55 -23.90 15.61 -3.06 -0.05 -23.95 16 20 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 21 S -0.14 -7.51 20.57 -56.49 -1.16 -8.68 16 22 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 23 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 24 C 0.02 0.97 5.49 84.86 0.47 1.44 16 25 N -0.91 -55.06 13.22 21.65 0.29 -54.78 16 26 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 27 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.66 6.36 -2.39 -0.02 0.64 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.28 7.77 -2.38 -0.02 1.26 16 35 H 0.28 0.91 8.06 -2.91 -0.02 0.88 16 36 H 0.09 2.51 6.14 -2.39 -0.01 2.50 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.41 8.21 6.88 -92.71 -0.64 7.57 16 39 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 40 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -89.05 363.72 0.24 -88.81 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -1.51 Total: 15.20 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 8.16 Total: 20.70 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.17 Total: -117.71 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.12 Total: -43.79 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.16 Total: -8.68 kcal Total: -89.05 0.24 -88.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.513 kcal (2) G-P(sol) polarization free energy of solvation -89.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds