Wall clock time and date at job start Tue Mar 31 2020 23:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.78254 * 2 1 4 4 C 1.54328 * 110.72018 * 123.24179 * 2 1 3 5 5 N 1.47020 * 107.27319 * 140.55794 * 4 2 1 6 6 C 1.34774 * 125.64754 * 181.10061 * 5 4 2 7 7 O 1.21559 * 120.00369 * 359.96934 * 6 5 4 8 8 C 1.47873 * 119.99874 * 179.97438 * 6 5 4 9 9 N 1.34549 * 126.04847 * 179.97438 * 8 6 5 10 10 C 1.30871 * 107.27009 * 180.02562 * 9 8 6 11 11 N 1.34583 * 107.62554 * 359.97438 * 10 9 8 12 12 H 0.96995 * 125.74687 * 179.97438 * 11 10 9 13 13 N 1.28859 * 108.50201 * 359.73468 * 11 10 9 14 14 C 1.47423 * 108.70217 * 1.05147 * 5 4 2 15 15 C 1.54907 * 104.83481 * 335.87965 * 14 5 4 16 16 H 1.09002 * 111.00447 * 155.07987 * 15 14 5 17 17 N 1.46508 * 111.00222 * 278.89414 * 15 14 5 18 18 C 1.34775 * 119.99912 * 270.41786 * 17 15 14 19 19 O 1.21291 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00148 * 180.02562 * 18 17 15 21 21 S 1.80995 * 109.47309 * 180.02562 * 20 18 17 22 22 C 1.76201 * 100.00209 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99514 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00034 * 179.97438 * 22 21 20 25 25 N 1.31634 * 119.99842 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99935 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46758 * 90.00180 * 26 24 22 28 28 H 1.48494 * 109.47123 * 210.00306 * 26 24 22 29 29 H 1.48503 * 109.47106 * 330.00816 * 26 24 22 30 30 H 1.08999 * 109.47257 * 183.24133 * 1 2 3 31 31 H 1.08998 * 109.46694 * 303.23766 * 1 2 3 32 32 H 1.08996 * 109.47026 * 63.23546 * 1 2 3 33 33 H 1.08997 * 109.88302 * 21.13496 * 4 2 1 34 34 H 1.09006 * 109.88244 * 259.97505 * 4 2 1 35 35 H 1.07994 * 126.18499 * 179.97438 * 10 9 8 36 36 H 1.09003 * 110.36873 * 217.03262 * 14 5 4 37 37 H 1.09002 * 110.35997 * 94.71597 * 14 5 4 38 38 H 0.96992 * 119.99926 * 90.41947 * 17 15 14 39 39 H 1.09003 * 109.47060 * 300.00029 * 20 18 17 40 40 H 1.09000 * 109.47218 * 60.00066 * 20 18 17 41 41 H 0.97003 * 119.99316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2446 -1.5508 0.7390 6 6 3.9914 -2.3847 1.4894 7 8 3.7174 -2.5584 2.6609 8 6 5.1444 -3.0885 0.8876 9 7 5.9684 -3.9433 1.5205 10 6 6.8548 -4.3474 0.6465 11 7 6.5778 -3.7434 -0.5239 12 1 7.0723 -3.8561 -1.3506 13 7 5.5421 -2.9941 -0.3623 14 6 3.4632 -1.2499 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0870 17 7 1.2274 -1.9489 -1.5153 18 6 1.2518 -2.5016 -2.7442 19 8 1.9791 -2.0444 -3.6004 20 6 0.3754 -3.6876 -3.0546 21 16 0.6337 -4.1956 -4.7725 22 6 -0.4800 -5.5582 -4.8594 23 1 -1.0613 -5.8365 -3.9928 24 6 -0.6108 -6.2732 -6.0418 25 7 0.0975 -5.9336 -7.0981 26 14 -1.7909 -7.7184 -6.1337 27 1 -3.1280 -7.2386 -6.5664 28 1 -1.2811 -8.7123 -7.1122 29 1 -1.9018 -8.3528 -4.7956 30 1 -0.3634 -1.0260 0.0581 31 1 -0.3632 0.5633 0.8595 32 1 -0.3633 0.4628 -0.9175 33 1 1.3130 -1.4759 1.5776 34 1 2.3741 -0.1025 1.9978 35 1 7.6623 -5.0403 0.8311 36 1 3.7960 -2.1427 -1.2169 37 1 4.1932 -0.4480 -0.7984 38 1 0.6460 -2.3146 -0.8304 39 1 0.6316 -4.5125 -2.3897 40 1 -0.6699 -3.4149 -2.9092 41 1 0.0062 -6.4336 -7.9243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072522274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:40 Heat of formation + Delta-G solvation = 30.121819 kcal Electronic energy + Delta-G solvation = -26904.647702 eV Core-core repulsion = 22948.256624 eV Total energy + Delta-G solvation = -3956.391078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.73006 -40.59670 -39.05991 -37.62240 -34.15663 -33.66185 -32.78404 -32.45554 -31.55544 -30.04199 -28.17534 -27.22302 -25.51275 -24.62557 -23.18800 -22.81671 -20.98565 -20.12989 -19.97721 -18.71763 -17.96340 -17.45358 -16.93163 -16.54176 -16.41479 -15.66688 -15.41519 -15.07600 -14.93286 -14.82842 -14.42230 -14.04106 -13.80175 -13.37963 -13.21091 -12.97023 -12.77135 -12.70184 -12.57398 -12.16040 -12.00431 -11.55912 -11.23626 -11.08708 -11.05737 -11.03290 -10.97960 -10.77927 -10.73065 -10.40307 -10.01825 -9.84349 -9.47548 -9.18000 -9.08844 -8.73920 -8.27740 -6.53229 -6.24902 -3.95344 1.09939 1.84806 2.25144 2.60032 2.96921 3.01612 3.15365 3.20296 3.25787 3.29892 3.66185 3.78375 4.12554 4.17904 4.18639 4.32660 4.52440 4.57219 4.90948 5.04438 5.10565 5.14510 5.23571 5.35709 5.42011 5.49954 5.55687 5.61902 5.66278 5.75671 5.80787 5.85884 5.91613 5.97074 6.09159 6.11593 6.44120 6.57742 7.10984 7.56960 7.60532 7.64362 7.94357 8.32441 8.54757 9.20889 10.82490 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003078 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.081243 B = 9093.391000 C =10510.403544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.112 3.888 5 N -0.602 5.602 6 C 0.630 3.370 7 O -0.514 6.514 8 C 0.151 3.849 9 N -0.464 5.464 10 C 0.197 3.803 11 N -0.396 5.396 12 H 0.454 0.546 13 N -0.265 5.265 14 C 0.085 3.915 15 C 0.138 3.862 16 H 0.114 0.886 17 N -0.726 5.726 18 C 0.535 3.465 19 O -0.515 6.515 20 C -0.154 4.154 21 S -0.058 6.058 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.276 1.276 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.231 0.769 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.399 0.601 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.101 10.368 15.469 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.119 0.881 4 C -0.010 4.010 5 N -0.337 5.337 6 C 0.414 3.586 7 O -0.386 6.386 8 C -0.129 4.129 9 N -0.188 5.188 10 C -0.101 4.101 11 N -0.119 5.119 12 H 0.301 0.699 13 N -0.107 5.107 14 C -0.039 4.039 15 C 0.031 3.969 16 H 0.132 0.868 17 N -0.381 5.381 18 C 0.322 3.678 19 O -0.389 6.389 20 C -0.305 4.305 21 S 0.168 5.832 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.202 1.202 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.234 0.766 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.815 11.263 14.587 21.368 hybrid contribution -1.151 -2.031 0.631 2.418 sum 9.664 9.231 15.218 20.253 Atomic orbital electron populations 1.21714 0.92894 1.02532 1.02771 1.22580 0.97374 0.99715 0.93283 0.88070 1.22119 0.87299 0.94683 0.96862 1.48110 1.29819 1.43738 1.12018 1.15835 0.79866 0.78293 0.84632 1.90836 1.69368 1.63227 1.15124 1.23654 1.00328 1.01495 0.87437 1.71289 1.04531 1.12000 1.31016 1.26743 1.01126 1.00362 0.81847 1.45241 1.21218 1.31478 1.13965 0.69914 1.74454 1.01898 1.14798 1.19531 1.23112 0.97552 1.03213 0.80014 1.22028 0.88931 0.88032 0.97891 0.86806 1.45966 1.45306 1.33025 1.13798 1.20306 0.82490 0.83871 0.81167 1.90701 1.40081 1.62027 1.46125 1.23535 1.01524 0.97808 1.07612 1.85337 1.57071 1.38906 1.01871 1.22875 1.27902 1.16892 1.00753 0.90948 1.24979 0.96178 0.97663 0.94665 1.70018 1.38814 1.39648 1.01858 0.86178 0.80354 0.80916 0.78140 1.20221 1.20741 1.19686 0.92142 0.91879 0.91346 0.90704 0.90667 0.75259 0.87829 0.90186 0.76614 0.89389 0.89170 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.71 37.16 0.32 -0.64 16 2 C -0.11 -0.82 3.42 -88.78 -0.30 -1.12 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.11 1.02 6.46 -3.06 -0.02 1.00 16 5 N -0.60 -7.04 3.33 -171.62 -0.57 -7.61 16 6 C 0.63 9.19 7.86 -12.32 -0.10 9.09 16 7 O -0.51 -8.92 17.42 5.31 0.09 -8.83 16 8 C 0.15 2.08 7.81 -156.35 -1.22 0.86 16 9 N -0.46 -6.03 11.41 -12.37 -0.14 -6.17 16 10 C 0.20 1.52 13.14 -90.48 -1.19 0.33 16 11 N -0.40 -3.05 6.93 29.56 0.20 -2.85 16 12 H 0.45 1.69 8.96 -190.21 -1.70 -0.01 16 13 N -0.27 -3.11 9.38 32.07 0.30 -2.81 16 14 C 0.08 0.95 5.84 -2.53 -0.01 0.93 16 15 C 0.14 1.45 3.12 -65.78 -0.21 1.24 16 16 H 0.11 1.28 7.63 -51.93 -0.40 0.88 16 17 N -0.73 -9.10 4.62 -51.73 -0.24 -9.34 16 18 C 0.54 9.41 7.85 -10.99 -0.09 9.32 16 19 O -0.52 -10.85 15.55 5.55 0.09 -10.77 16 20 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 21 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 22 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 23 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 26 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.06 0.43 6.42 -51.93 -0.33 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.23 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.10 1.41 6.17 -51.93 -0.32 1.09 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 4.28 7.03 -40.82 -0.29 3.99 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -39.48 363.82 -10.05 -49.53 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.37 Total: 0.60 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.39 Total: 5.38 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.29 Total: -53.87 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.18 Total: -19.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.48 -10.05 -49.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.654 kcal (2) G-P(sol) polarization free energy of solvation -39.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds