Wall clock time and date at job start Tue Mar 31 2020 23:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.78254 * 2 1 4 4 C 1.54328 * 110.72018 * 123.24179 * 2 1 3 5 5 N 1.47020 * 107.27319 * 140.55794 * 4 2 1 6 6 C 1.34774 * 125.64754 * 181.10061 * 5 4 2 7 7 O 1.21559 * 120.00369 * 359.96934 * 6 5 4 8 8 C 1.47873 * 119.99874 * 179.97438 * 6 5 4 9 9 N 1.34549 * 126.04847 * 179.97438 * 8 6 5 10 10 C 1.30871 * 107.27009 * 180.02562 * 9 8 6 11 11 N 1.34583 * 107.62554 * 359.97438 * 10 9 8 12 12 H 0.96995 * 125.74687 * 179.97438 * 11 10 9 13 13 N 1.28859 * 108.50201 * 359.73468 * 11 10 9 14 14 C 1.47423 * 108.70217 * 1.05147 * 5 4 2 15 15 C 1.54907 * 104.83481 * 335.87965 * 14 5 4 16 16 H 1.09002 * 111.00447 * 155.07987 * 15 14 5 17 17 N 1.46508 * 111.00222 * 278.89414 * 15 14 5 18 18 C 1.34775 * 119.99912 * 270.41786 * 17 15 14 19 19 O 1.21291 * 119.99700 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00148 * 180.02562 * 18 17 15 21 21 S 1.80995 * 109.47309 * 180.02562 * 20 18 17 22 22 C 1.76201 * 100.00209 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99514 * 0.02562 * 22 21 20 24 24 C 1.38798 * 120.00034 * 179.97438 * 22 21 20 25 25 N 1.31634 * 119.99842 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99935 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46758 * 90.00180 * 26 24 22 28 28 H 1.48494 * 109.47123 * 210.00306 * 26 24 22 29 29 H 1.48503 * 109.47106 * 330.00816 * 26 24 22 30 30 H 1.08999 * 109.47257 * 183.24133 * 1 2 3 31 31 H 1.08998 * 109.46694 * 303.23766 * 1 2 3 32 32 H 1.08996 * 109.47026 * 63.23546 * 1 2 3 33 33 H 1.08997 * 109.88302 * 21.13496 * 4 2 1 34 34 H 1.09006 * 109.88244 * 259.97505 * 4 2 1 35 35 H 1.07994 * 126.18499 * 179.97438 * 10 9 8 36 36 H 1.09003 * 110.36873 * 217.03262 * 14 5 4 37 37 H 1.09002 * 110.35997 * 94.71597 * 14 5 4 38 38 H 0.96992 * 119.99926 * 90.41947 * 17 15 14 39 39 H 1.09003 * 109.47060 * 300.00029 * 20 18 17 40 40 H 1.09000 * 109.47218 * 60.00066 * 20 18 17 41 41 H 0.97003 * 119.99316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2446 -1.5508 0.7390 6 6 3.9914 -2.3847 1.4894 7 8 3.7174 -2.5584 2.6609 8 6 5.1444 -3.0885 0.8876 9 7 5.9684 -3.9433 1.5205 10 6 6.8548 -4.3474 0.6465 11 7 6.5778 -3.7434 -0.5239 12 1 7.0723 -3.8561 -1.3506 13 7 5.5421 -2.9941 -0.3623 14 6 3.4632 -1.2499 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0870 17 7 1.2274 -1.9489 -1.5153 18 6 1.2518 -2.5016 -2.7442 19 8 1.9791 -2.0444 -3.6004 20 6 0.3754 -3.6876 -3.0546 21 16 0.6337 -4.1956 -4.7725 22 6 -0.4800 -5.5582 -4.8594 23 1 -1.0613 -5.8365 -3.9928 24 6 -0.6108 -6.2732 -6.0418 25 7 0.0975 -5.9336 -7.0981 26 14 -1.7909 -7.7184 -6.1337 27 1 -3.1280 -7.2386 -6.5664 28 1 -1.2811 -8.7123 -7.1122 29 1 -1.9018 -8.3528 -4.7956 30 1 -0.3634 -1.0260 0.0581 31 1 -0.3632 0.5633 0.8595 32 1 -0.3633 0.4628 -0.9175 33 1 1.3130 -1.4759 1.5776 34 1 2.3741 -0.1025 1.9978 35 1 7.6623 -5.0403 0.8311 36 1 3.7960 -2.1427 -1.2169 37 1 4.1932 -0.4480 -0.7984 38 1 0.6460 -2.3146 -0.8304 39 1 0.6316 -4.5125 -2.3897 40 1 -0.6699 -3.4149 -2.9092 41 1 0.0062 -6.4336 -7.9243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072522274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:40 Heat of formation + Delta-G solvation = 0.677190 kcal Electronic energy + Delta-G solvation = -26905.924516 eV Core-core repulsion = 22948.256624 eV Total energy + Delta-G solvation = -3957.667893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.50942 -41.59932 -40.31387 -38.74127 -35.25669 -34.59340 -34.47304 -33.74240 -32.34450 -31.30756 -29.39007 -27.98925 -27.65332 -25.46506 -23.94628 -23.72447 -22.13172 -21.03859 -20.86619 -19.86886 -19.49814 -18.45954 -17.93492 -17.72850 -17.47519 -16.88765 -16.70502 -16.56794 -16.25868 -15.82753 -15.71376 -15.26841 -14.85683 -14.64281 -14.49275 -14.23928 -13.74625 -13.64417 -13.51163 -13.39494 -13.17444 -12.92596 -12.90460 -12.64539 -12.31774 -11.95185 -11.81537 -11.79947 -11.69047 -11.65203 -11.41118 -11.15189 -10.95165 -10.81969 -10.30497 -10.28848 -9.73639 -8.66122 -8.35955 -6.13026 0.20896 1.09753 1.25953 1.40959 1.44712 1.45807 1.56255 1.60247 1.92947 2.15922 2.23790 2.28275 2.95631 2.98316 3.30052 3.35367 3.45711 3.51116 3.83349 3.95095 3.98734 4.18071 4.27442 4.37944 4.49233 4.51712 4.61427 4.72114 4.75550 4.78952 4.85287 5.06362 5.08631 5.17936 5.26685 5.40907 5.41224 5.48975 5.89904 6.13587 6.18680 6.44911 6.73753 7.03751 7.05936 7.21630 8.73064 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003078 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.081243 B = 9093.391000 C =10510.403544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.128 0.872 4 C 0.106 3.894 5 N -0.596 5.596 6 C 0.621 3.379 7 O -0.554 6.554 8 C 0.123 3.877 9 N -0.513 5.513 10 C 0.220 3.780 11 N -0.384 5.384 12 H 0.471 0.529 13 N -0.277 5.277 14 C 0.090 3.910 15 C 0.134 3.866 16 H 0.112 0.888 17 N -0.703 5.703 18 C 0.541 3.459 19 O -0.554 6.554 20 C -0.133 4.133 21 S -0.139 6.139 22 C -0.550 4.550 23 H 0.079 0.921 24 C 0.017 3.983 25 N -0.909 5.909 26 Si 0.995 3.005 27 H -0.267 1.267 28 H -0.277 1.277 29 H -0.261 1.261 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.284 0.716 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.410 0.590 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.724 10.390 16.519 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.146 0.854 4 C -0.015 4.015 5 N -0.329 5.329 6 C 0.406 3.594 7 O -0.430 6.430 8 C -0.156 4.156 9 N -0.238 5.238 10 C -0.077 4.077 11 N -0.109 5.109 12 H 0.322 0.678 13 N -0.120 5.120 14 C -0.034 4.034 15 C 0.028 3.972 16 H 0.130 0.870 17 N -0.357 5.357 18 C 0.327 3.673 19 O -0.432 6.432 20 C -0.285 4.285 21 S 0.088 5.912 22 C -0.698 4.698 23 H 0.097 0.903 24 C -0.188 4.188 25 N -0.545 5.545 26 Si 0.817 3.183 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.185 1.185 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.299 0.701 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.248 0.752 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.433 11.316 15.642 21.945 hybrid contribution -0.928 -1.992 0.353 2.225 sum 9.506 9.325 15.994 20.812 Atomic orbital electron populations 1.21736 0.92016 1.02626 1.03545 1.22569 0.97896 1.00093 0.90279 0.85403 1.22354 0.86469 0.94813 0.97909 1.48170 1.29830 1.42898 1.11974 1.16121 0.80332 0.78501 0.84421 1.90791 1.70699 1.64854 1.16665 1.23599 1.01041 1.02790 0.88219 1.71242 1.06118 1.13301 1.33161 1.27676 1.00407 0.99069 0.80510 1.45285 1.20199 1.30440 1.14989 0.67840 1.74377 1.03099 1.15729 1.18806 1.23065 0.98168 1.02706 0.79437 1.22220 0.88569 0.87274 0.99163 0.86988 1.45730 1.44913 1.32889 1.12168 1.19910 0.81807 0.83352 0.82278 1.90692 1.41673 1.63102 1.47717 1.23385 1.03292 0.99179 1.02594 1.85437 1.57824 1.39563 1.08331 1.23211 1.28036 1.17230 1.01319 0.90288 1.26054 0.97927 1.00695 0.94092 1.70168 1.40592 1.41198 1.02588 0.85009 0.77848 0.76898 0.78588 1.19211 1.20168 1.18543 0.92561 0.89982 0.91567 0.90790 0.89591 0.70081 0.90186 0.88504 0.75237 0.88343 0.87258 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.71 71.98 0.63 -0.89 16 2 C -0.09 -1.09 3.42 -9.60 -0.03 -1.12 16 3 H 0.13 1.00 8.14 -2.39 -0.02 0.99 16 4 C 0.11 1.74 6.46 86.73 0.56 2.30 16 5 N -0.60 -13.56 3.33 -815.15 -2.71 -16.27 16 6 C 0.62 18.44 7.86 86.79 0.68 19.12 16 7 O -0.55 -19.82 17.42 -3.90 -0.07 -19.89 16 8 C 0.12 3.42 7.81 137.13 1.07 4.49 16 9 N -0.51 -13.17 11.41 -193.04 -2.20 -15.37 16 10 C 0.22 2.98 13.14 180.30 2.37 5.35 16 11 N -0.38 -5.41 6.93 -60.38 -0.42 -5.83 16 12 H 0.47 2.72 8.96 -219.80 -1.97 0.75 16 13 N -0.28 -6.42 9.38 -52.44 -0.49 -6.91 16 14 C 0.09 1.93 5.84 86.85 0.51 2.43 16 15 C 0.13 2.59 3.12 46.38 0.14 2.74 16 16 H 0.11 2.35 7.63 -2.39 -0.02 2.33 16 17 N -0.70 -16.74 4.62 -435.95 -2.02 -18.76 16 18 C 0.54 18.79 7.85 87.66 0.69 19.48 16 19 O -0.55 -23.64 15.55 -3.06 -0.05 -23.68 16 20 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 21 S -0.14 -7.52 20.57 -56.49 -1.16 -8.69 16 22 C -0.55 -31.20 9.50 67.95 0.65 -30.56 16 23 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 24 C 0.02 0.98 5.49 84.86 0.47 1.45 16 25 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 26 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 30 H 0.06 0.66 6.42 -2.39 -0.02 0.64 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.26 7.76 -2.39 -0.02 1.24 16 34 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.28 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.08 2.18 6.17 -2.39 -0.01 2.17 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.41 8.07 7.03 -92.71 -0.65 7.42 16 39 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -89.91 363.82 -0.16 -90.07 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -1.52 Total: 14.67 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 8.17 Total: 20.03 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -7.55 Total: -117.82 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.12 Total: -43.57 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.69 kcal Total: -89.91 -0.16 -90.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.749 kcal (2) G-P(sol) polarization free energy of solvation -89.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds