Wall clock time and date at job start Tue Mar 31 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21560 * 120.00134 * 359.71660 * 6 5 4 8 8 C 1.47869 * 119.99794 * 179.71567 * 6 5 4 9 9 N 1.34542 * 126.05030 * 359.68892 * 8 6 5 10 10 C 1.30879 * 107.27289 * 179.89199 * 9 8 6 11 11 N 1.34583 * 107.61865 * 0.36682 * 10 9 8 12 12 H 0.97002 * 125.74606 * 179.72716 * 11 10 9 13 13 N 1.28853 * 108.50742 * 359.76564 * 11 10 9 14 14 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 15 15 C 1.54316 * 107.27365 * 1.05989 * 14 5 4 16 16 H 1.09002 * 110.72355 * 263.82891 * 15 14 5 17 17 N 1.46502 * 110.72235 * 140.55686 * 15 14 5 18 18 C 1.34768 * 120.00173 * 86.45281 * 17 15 14 19 19 O 1.21281 * 120.00094 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00129 * 180.02562 * 18 17 15 21 21 S 1.81006 * 109.47176 * 179.97438 * 20 18 17 22 22 C 1.76202 * 100.00044 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99922 * 359.97438 * 22 21 20 24 24 C 1.38799 * 120.00321 * 180.02562 * 22 21 20 25 25 N 1.31629 * 119.99474 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00369 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46969 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47317 * 119.99858 * 26 24 22 29 29 H 1.48497 * 109.47176 * 240.00125 * 26 24 22 30 30 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 31 31 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 32 32 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 33 33 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 34 34 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 35 35 H 1.07995 * 126.19004 * 180.13126 * 10 9 8 36 36 H 1.09004 * 109.87531 * 120.47707 * 14 5 4 37 37 H 1.08996 * 109.88343 * 241.48426 * 14 5 4 38 38 H 0.96997 * 119.99518 * 266.45032 * 17 15 14 39 39 H 1.08994 * 109.47477 * 299.99726 * 20 18 17 40 40 H 1.09007 * 109.47146 * 60.00227 * 20 18 17 41 41 H 0.97005 * 119.99759 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 4.2993 -1.5048 2.7985 8 6 5.7433 -1.9960 1.0278 9 7 6.0369 -2.1129 -0.2799 10 6 7.2797 -2.5144 -0.3648 11 7 7.7496 -2.6527 0.8888 12 1 8.6433 -2.9422 1.1302 13 7 6.8120 -2.3367 1.7142 14 6 3.4674 -1.2739 -0.6966 15 6 2.0862 -0.8075 -1.2026 16 1 1.4468 -1.6626 -1.4217 17 7 2.2287 0.0505 -2.3815 18 6 2.3022 -0.4990 -3.6099 19 8 2.2500 -1.7037 -3.7394 20 6 2.4494 0.3835 -4.8225 21 16 2.5203 -0.6437 -6.3112 22 6 2.6887 0.6086 -7.5393 23 1 2.7185 1.6486 -7.2495 24 6 2.7821 0.2587 -8.8792 25 7 2.7444 -1.0088 -9.2324 26 14 2.9600 1.5863 -10.1811 27 1 2.9747 2.9204 -9.5289 28 1 4.2296 1.3840 -10.9242 29 1 1.8163 1.5100 -11.1253 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4519 -1.6710 1.4018 34 1 2.1560 -0.1729 2.0836 35 1 7.8277 -2.7043 -1.2758 36 1 4.2427 -0.5993 -1.0601 37 1 3.6677 -2.2884 -1.0410 38 1 2.2701 1.0140 -2.2779 39 1 1.5958 1.0582 -4.8866 40 1 3.3672 0.9656 -4.7391 41 1 2.8093 -1.2534 -10.1689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072522275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:43 Heat of formation + Delta-G solvation = 26.430372 kcal Electronic energy + Delta-G solvation = -26421.355528 eV Core-core repulsion = 22464.804377 eV Total energy + Delta-G solvation = -3956.551151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.77983 -40.45584 -39.10167 -37.61656 -34.34923 -33.76886 -32.64703 -32.43734 -31.67659 -29.96019 -27.91657 -27.35847 -25.49451 -24.48727 -23.24498 -22.79113 -20.88430 -20.29854 -19.90428 -18.95992 -17.83272 -17.31292 -16.82627 -16.59297 -16.28310 -16.13931 -15.29035 -15.03001 -14.86773 -14.81497 -14.39415 -13.91720 -13.72974 -13.53402 -13.16680 -12.97235 -12.80615 -12.57884 -12.45643 -12.19998 -12.04139 -11.46673 -11.43186 -11.08270 -11.06726 -11.02872 -10.91821 -10.76207 -10.72209 -10.51555 -10.08035 -9.81400 -9.42994 -9.09126 -8.99179 -8.84859 -8.23889 -6.50537 -6.22977 -3.93070 1.05934 1.79687 2.10633 2.65943 3.01507 3.05806 3.10158 3.20499 3.27210 3.31466 3.62060 3.78961 4.08488 4.19343 4.30055 4.38927 4.50871 4.61095 4.93808 5.10007 5.12455 5.17824 5.22299 5.31775 5.50751 5.56602 5.59750 5.62414 5.72666 5.82827 5.86918 5.88928 5.92561 5.98145 6.11796 6.13994 6.36122 6.58505 7.11625 7.56103 7.58937 7.66651 7.89222 8.34384 8.58388 9.22754 10.84428 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002610 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.292320 B =10724.089871 C =12340.083383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 H 0.092 0.908 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.631 3.369 7 O -0.522 6.522 8 C 0.148 3.852 9 N -0.475 5.475 10 C 0.202 3.798 11 N -0.401 5.401 12 H 0.453 0.547 13 N -0.251 5.251 14 C 0.099 3.901 15 C 0.140 3.860 16 H 0.106 0.894 17 N -0.728 5.728 18 C 0.534 3.466 19 O -0.512 6.512 20 C -0.153 4.153 21 S -0.059 6.059 22 C -0.535 4.535 23 H 0.073 0.927 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 0.993 20.898 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.110 0.890 4 C -0.007 4.007 5 N -0.333 5.333 6 C 0.416 3.584 7 O -0.395 6.395 8 C -0.132 4.132 9 N -0.201 5.201 10 C -0.096 4.096 11 N -0.124 5.124 12 H 0.299 0.701 13 N -0.091 5.091 14 C -0.025 4.025 15 C 0.034 3.966 16 H 0.124 0.876 17 N -0.382 5.382 18 C 0.321 3.679 19 O -0.386 6.386 20 C -0.304 4.304 21 S 0.168 5.832 22 C -0.683 4.683 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.780 -1.029 21.628 22.173 hybrid contribution 1.206 2.390 -0.915 2.829 sum 5.985 1.361 20.712 21.603 Atomic orbital electron populations 1.21709 0.92729 1.02785 1.02671 1.22678 0.97158 0.99696 0.93605 0.88970 1.22369 0.81890 0.98742 0.97690 1.48005 1.11744 1.65745 1.07843 1.15788 0.80271 0.77643 0.84730 1.90837 1.81872 1.53463 1.13356 1.23623 0.95708 1.06726 0.87160 1.71524 1.12385 1.18435 1.17742 1.26785 0.91923 0.99752 0.91133 1.45297 1.14190 1.47679 1.05229 0.70068 1.74339 0.97794 1.16322 1.20655 1.22644 0.98132 1.03938 0.77804 1.21966 0.95407 0.94583 0.84676 0.87611 1.45927 1.77171 1.09880 1.05220 1.20332 0.74964 0.89086 0.83548 1.90713 1.47306 1.14844 1.85701 1.23530 1.04853 1.03236 0.98781 1.85400 1.95801 1.09637 0.92409 1.22909 1.58112 0.94134 0.93129 0.90900 1.24988 0.94623 0.96126 0.97864 1.70028 1.46866 1.15714 1.17664 0.86126 0.77935 0.80877 0.80606 1.19623 1.20597 1.20590 0.91897 0.91958 0.91458 0.90404 0.89601 0.75119 0.89837 0.89557 0.76556 0.89203 0.89184 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.31 37.16 0.35 -0.63 16 2 C -0.11 -0.89 3.25 -88.46 -0.29 -1.18 16 3 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 4 C 0.12 1.07 6.37 -2.53 -0.02 1.05 16 5 N -0.60 -7.10 3.33 -171.62 -0.57 -7.67 16 6 C 0.63 8.88 7.86 -12.32 -0.10 8.78 16 7 O -0.52 -8.58 17.34 5.31 0.09 -8.49 16 8 C 0.15 1.93 7.80 -156.36 -1.22 0.71 16 9 N -0.47 -5.52 8.86 -12.37 -0.11 -5.63 16 10 C 0.20 1.46 13.14 -90.48 -1.19 0.27 16 11 N -0.40 -2.70 6.93 29.56 0.20 -2.50 16 12 H 0.45 0.97 8.96 -190.21 -1.71 -0.74 16 13 N -0.25 -2.93 12.30 32.07 0.39 -2.54 16 14 C 0.10 1.19 5.28 -3.07 -0.02 1.17 16 15 C 0.14 1.54 2.70 -66.10 -0.18 1.36 16 16 H 0.11 1.32 7.60 -51.93 -0.39 0.93 16 17 N -0.73 -8.77 5.13 -52.03 -0.27 -9.03 16 18 C 0.53 9.24 7.84 -10.99 -0.09 9.15 16 19 O -0.51 -10.89 15.59 5.56 0.09 -10.81 16 20 C -0.15 -2.93 6.16 36.00 0.22 -2.70 16 21 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 22 C -0.53 -14.87 9.50 30.94 0.29 -14.58 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 25 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 26 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.67 7.98 -51.93 -0.41 0.25 16 34 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.23 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.08 1.07 7.54 -51.93 -0.39 0.68 16 37 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 38 H 0.40 3.70 8.52 -40.82 -0.35 3.35 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 40 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -38.99 368.03 -10.01 -49.00 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.56 Total: -0.53 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.32 Total: 5.36 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.39 Total: -52.33 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.99 -10.01 -49.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.433 kcal (2) G-P(sol) polarization free energy of solvation -38.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds