Wall clock time and date at job start Tue Mar 31 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 110.88448 * 2 1 4 4 C 1.54910 * 111.00282 * 123.92605 * 2 1 3 5 5 N 1.47425 * 104.83231 * 155.08241 * 4 2 1 6 6 C 1.34771 * 125.64767 * 156.13676 * 5 4 2 7 7 O 1.21560 * 120.00134 * 359.71660 * 6 5 4 8 8 C 1.47869 * 119.99794 * 179.71567 * 6 5 4 9 9 N 1.34542 * 126.05030 * 359.68892 * 8 6 5 10 10 C 1.30879 * 107.27289 * 179.89199 * 9 8 6 11 11 N 1.34583 * 107.61865 * 0.36682 * 10 9 8 12 12 H 0.97002 * 125.74606 * 179.72716 * 11 10 9 13 13 N 1.28853 * 108.50742 * 359.76564 * 11 10 9 14 14 C 1.47026 * 108.70074 * 335.87083 * 5 4 2 15 15 C 1.54316 * 107.27365 * 1.05989 * 14 5 4 16 16 H 1.09002 * 110.72355 * 263.82891 * 15 14 5 17 17 N 1.46502 * 110.72235 * 140.55686 * 15 14 5 18 18 C 1.34768 * 120.00173 * 86.45281 * 17 15 14 19 19 O 1.21281 * 120.00094 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00129 * 180.02562 * 18 17 15 21 21 S 1.81006 * 109.47176 * 179.97438 * 20 18 17 22 22 C 1.76202 * 100.00044 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99922 * 359.97438 * 22 21 20 24 24 C 1.38799 * 120.00321 * 180.02562 * 22 21 20 25 25 N 1.31629 * 119.99474 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00369 * 179.97438 * 24 22 21 27 27 H 1.48510 * 109.46969 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47317 * 119.99858 * 26 24 22 29 29 H 1.48497 * 109.47176 * 240.00125 * 26 24 22 30 30 H 1.08997 * 109.47161 * 183.87636 * 1 2 3 31 31 H 1.08991 * 109.46994 * 303.87731 * 1 2 3 32 32 H 1.08999 * 109.47006 * 63.87919 * 1 2 3 33 33 H 1.09001 * 110.36852 * 36.24540 * 4 2 1 34 34 H 1.08998 * 110.36449 * 273.92188 * 4 2 1 35 35 H 1.07995 * 126.19004 * 180.13126 * 10 9 8 36 36 H 1.09004 * 109.87531 * 120.47707 * 14 5 4 37 37 H 1.08996 * 109.88343 * 241.48426 * 14 5 4 38 38 H 0.96997 * 119.99518 * 266.45032 * 17 15 14 39 39 H 1.08994 * 109.47477 * 299.99726 * 20 18 17 40 40 H 1.09007 * 109.47146 * 60.00227 * 20 18 17 41 41 H 0.97005 * 119.99759 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8071 1.2000 5 7 3.4272 -1.2435 0.7728 6 6 4.4463 -1.5665 1.5934 7 8 4.2993 -1.5048 2.7985 8 6 5.7433 -1.9960 1.0278 9 7 6.0369 -2.1129 -0.2799 10 6 7.2797 -2.5144 -0.3648 11 7 7.7496 -2.6527 0.8888 12 1 8.6433 -2.9422 1.1302 13 7 6.8120 -2.3367 1.7142 14 6 3.4674 -1.2739 -0.6966 15 6 2.0862 -0.8075 -1.2026 16 1 1.4468 -1.6626 -1.4217 17 7 2.2287 0.0505 -2.3815 18 6 2.3022 -0.4990 -3.6099 19 8 2.2500 -1.7037 -3.7394 20 6 2.4494 0.3835 -4.8225 21 16 2.5203 -0.6437 -6.3112 22 6 2.6887 0.6086 -7.5393 23 1 2.7185 1.6486 -7.2495 24 6 2.7821 0.2587 -8.8792 25 7 2.7444 -1.0088 -9.2324 26 14 2.9600 1.5863 -10.1811 27 1 2.9747 2.9204 -9.5289 28 1 4.2296 1.3840 -10.9242 29 1 1.8163 1.5100 -11.1253 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4519 -1.6710 1.4018 34 1 2.1560 -0.1729 2.0836 35 1 7.8277 -2.7043 -1.2758 36 1 4.2427 -0.5993 -1.0601 37 1 3.6677 -2.2884 -1.0410 38 1 2.2701 1.0140 -2.2779 39 1 1.5958 1.0582 -4.8866 40 1 3.3672 0.9656 -4.7391 41 1 2.8093 -1.2534 -10.1689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072522275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:43 Heat of formation + Delta-G solvation = -2.579836 kcal Electronic energy + Delta-G solvation = -26422.613505 eV Core-core repulsion = 22464.804377 eV Total energy + Delta-G solvation = -3957.809128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.51828 -41.46919 -40.35548 -38.71699 -35.40827 -34.66758 -34.53814 -33.50798 -32.43756 -31.27908 -29.10365 -28.13509 -27.59965 -25.32961 -23.95172 -23.74925 -21.80423 -21.45070 -20.80915 -19.75543 -19.69121 -18.24331 -17.85948 -17.58843 -17.39324 -17.21664 -16.84062 -16.37144 -16.23098 -15.80360 -15.74312 -15.13284 -14.76323 -14.64488 -14.44073 -14.24190 -13.93097 -13.59319 -13.42911 -13.20878 -13.11244 -13.00443 -12.88977 -12.57445 -12.31574 -12.16096 -11.83489 -11.73075 -11.65363 -11.54739 -11.53286 -11.12089 -10.89419 -10.86026 -10.20665 -10.14155 -9.83862 -8.60233 -8.30899 -6.07338 0.19626 1.08142 1.27670 1.36329 1.43820 1.51354 1.61601 1.66666 2.01016 2.13406 2.29245 2.34547 2.91236 3.03490 3.28917 3.38722 3.50362 3.52595 3.87621 3.97692 4.02200 4.16667 4.27679 4.38426 4.50535 4.58911 4.60445 4.79904 4.81028 4.83604 4.88529 5.02722 5.09122 5.17413 5.22324 5.41417 5.46723 5.51482 5.88984 6.13623 6.24252 6.54197 6.70814 7.01566 7.11142 7.29576 8.78283 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002610 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.292320 B =10724.089871 C =12340.083383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.111 0.889 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.624 3.376 7 O -0.556 6.556 8 C 0.122 3.878 9 N -0.510 5.510 10 C 0.218 3.782 11 N -0.379 5.379 12 H 0.472 0.528 13 N -0.274 5.274 14 C 0.111 3.889 15 C 0.140 3.860 16 H 0.092 0.908 17 N -0.700 5.700 18 C 0.540 3.460 19 O -0.558 6.558 20 C -0.130 4.130 21 S -0.148 6.148 22 C -0.544 4.544 23 H 0.082 0.918 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.996 3.004 27 H -0.257 1.257 28 H -0.275 1.275 29 H -0.276 1.276 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.278 0.722 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 3.228 21.144 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.129 0.871 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.410 3.590 7 O -0.433 6.433 8 C -0.158 4.158 9 N -0.237 5.237 10 C -0.079 4.079 11 N -0.105 5.105 12 H 0.324 0.676 13 N -0.116 5.116 14 C -0.013 4.013 15 C 0.034 3.966 16 H 0.110 0.890 17 N -0.354 5.354 18 C 0.326 3.674 19 O -0.435 6.435 20 C -0.281 4.281 21 S 0.079 5.921 22 C -0.691 4.691 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.818 3.182 27 H -0.180 1.180 28 H -0.200 1.200 29 H -0.201 1.201 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.293 0.707 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.257 0.743 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.254 1.244 21.908 22.564 hybrid contribution 1.137 1.652 -0.889 2.194 sum 6.391 2.897 21.019 22.159 Atomic orbital electron populations 1.21714 0.91436 1.03060 1.03442 1.22634 0.97974 0.99757 0.90818 0.87106 1.22596 0.80751 0.99378 0.98469 1.48047 1.12275 1.64893 1.07548 1.16065 0.81059 0.77360 0.84536 1.90797 1.82661 1.55234 1.14565 1.23505 0.95828 1.08495 0.87948 1.71479 1.14724 1.20148 1.17301 1.27595 0.90821 0.97211 0.92279 1.45265 1.14310 1.46199 1.04715 0.67634 1.74240 0.98415 1.16810 1.22088 1.22416 0.98397 1.02524 0.77968 1.22004 0.94869 0.94732 0.85000 0.89001 1.45593 1.75020 1.10976 1.03819 1.20033 0.74818 0.88096 0.84495 1.90710 1.49772 1.16614 1.86397 1.23371 1.06755 1.02276 0.95697 1.85572 1.96124 1.13384 0.96974 1.23239 1.57805 0.94428 0.93676 0.89959 1.26082 0.94016 0.98578 1.00443 1.70188 1.48116 1.18176 1.18272 0.84940 0.77949 0.78042 0.77232 1.18042 1.20045 1.20137 0.92163 0.90018 0.91619 0.89771 0.88889 0.70707 0.90326 0.91810 0.74342 0.87083 0.87218 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.31 71.99 0.67 -0.90 16 2 C -0.09 -1.27 3.25 -9.40 -0.03 -1.30 16 3 H 0.11 1.19 8.00 -2.39 -0.02 1.17 16 4 C 0.11 1.89 6.37 86.86 0.55 2.45 16 5 N -0.59 -14.02 3.33 -815.17 -2.71 -16.73 16 6 C 0.62 17.93 7.86 86.79 0.68 18.61 16 7 O -0.56 -18.75 17.34 -3.91 -0.07 -18.82 16 8 C 0.12 3.21 7.80 137.13 1.07 4.28 16 9 N -0.51 -11.67 8.86 -193.04 -1.71 -13.38 16 10 C 0.22 2.77 13.14 180.30 2.37 5.14 16 11 N -0.38 -4.56 6.93 -60.38 -0.42 -4.98 16 12 H 0.47 1.08 8.96 -219.79 -1.97 -0.89 16 13 N -0.27 -6.33 12.30 -52.44 -0.65 -6.98 16 14 C 0.11 2.66 5.28 86.73 0.46 3.12 16 15 C 0.14 2.93 2.70 46.18 0.12 3.06 16 16 H 0.09 2.28 7.60 -2.39 -0.02 2.26 16 17 N -0.70 -15.56 5.13 -436.93 -2.24 -17.80 16 18 C 0.54 18.20 7.84 87.66 0.69 18.89 16 19 O -0.56 -24.11 15.59 -3.03 -0.05 -24.16 16 20 C -0.13 -4.79 6.16 71.23 0.44 -4.35 16 21 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 22 C -0.54 -30.13 9.50 67.95 0.65 -29.48 16 23 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 24 C 0.01 0.75 5.49 84.86 0.47 1.22 16 25 N -0.91 -54.84 13.22 21.65 0.29 -54.55 16 26 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 27 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.06 0.73 8.07 -2.39 -0.02 0.71 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.37 7.98 -2.39 -0.02 1.35 16 34 H 0.09 1.53 8.04 -2.39 -0.02 1.52 16 35 H 0.28 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.08 1.97 7.54 -2.38 -0.02 1.96 16 37 H 0.06 1.84 7.72 -2.39 -0.02 1.82 16 38 H 0.42 6.40 8.52 -92.71 -0.79 5.61 16 39 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 40 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -88.70 368.03 -0.22 -88.93 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.66 Total: 12.12 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 8.13 Total: 20.74 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -7.44 Total: -114.42 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.11 Total: -42.98 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -88.70 -0.22 -88.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072522275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.346 kcal (2) G-P(sol) polarization free energy of solvation -88.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds