Wall clock time and date at job start Tue Mar 31 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42900 * 114.00243 * 2 1 4 4 H 1.08998 * 110.63671 * 26.86050 * 3 2 1 5 5 C 1.54332 * 110.85296 * 263.69445 * 3 2 1 6 6 N 1.47021 * 107.26555 * 219.66954 * 5 3 2 7 7 C 1.36933 * 125.65083 * 178.84852 * 6 5 3 8 8 H 1.07992 * 120.00550 * 189.39056 * 7 6 5 9 9 C 1.38817 * 119.99719 * 9.38726 * 7 6 5 10 10 N 1.31620 * 120.00119 * 209.16582 * 9 7 6 11 11 Si 1.86802 * 119.99832 * 29.16967 * 9 7 6 12 12 H 1.48503 * 109.46877 * 275.35104 * 11 9 7 13 13 H 1.48501 * 109.47185 * 155.35304 * 11 9 7 14 14 H 1.48496 * 109.47348 * 35.35086 * 11 9 7 15 15 C 1.47429 * 108.70372 * 358.58677 * 6 5 3 16 16 C 1.54911 * 104.83029 * 24.35416 * 15 6 5 17 17 H 1.09001 * 111.00755 * 81.06846 * 16 15 6 18 18 N 1.46502 * 111.00285 * 204.91590 * 16 15 6 19 19 C 1.34774 * 120.00030 * 273.54906 * 18 16 15 20 20 O 1.21281 * 120.00091 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99849 * 180.02562 * 19 18 16 22 22 C 1.50701 * 109.47347 * 179.97438 * 21 19 18 23 23 C 1.38653 * 120.79613 * 99.99311 * 22 21 19 24 24 C 1.38181 * 119.17598 * 179.97438 * 23 22 21 25 25 N 1.31882 * 120.79970 * 0.02562 * 24 23 22 26 26 C 1.31846 * 121.73500 * 359.97438 * 25 24 23 27 27 C 1.38351 * 120.74645 * 359.75014 * 26 25 24 28 28 Cl 1.73600 * 120.43496 * 180.28544 * 27 26 25 29 29 H 1.09008 * 109.47519 * 59.99902 * 1 2 3 30 30 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47267 * 299.99956 * 1 2 3 32 32 H 1.09004 * 109.98826 * 100.19707 * 5 3 2 33 33 H 1.08999 * 109.77703 * 339.02655 * 5 3 2 34 34 H 0.96999 * 119.99811 * 4.90321 * 10 9 7 35 35 H 1.08996 * 110.36839 * 143.19487 * 15 6 5 36 36 H 1.08997 * 110.36804 * 265.40805 * 15 6 5 37 37 H 0.97004 * 119.99841 * 93.54809 * 18 16 15 38 38 H 1.09000 * 109.47323 * 299.99760 * 21 19 18 39 39 H 1.09006 * 109.47571 * 60.00031 * 21 19 18 40 40 H 1.07996 * 120.40785 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.60449 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.62713 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0265 0.4609 5 6 2.3784 1.7429 -1.4335 6 7 3.6685 2.4440 -1.3580 7 6 4.3540 2.9705 -2.4200 8 1 5.3626 3.3325 -2.2858 9 6 3.7525 3.0388 -3.6693 10 7 4.4892 2.9804 -4.7584 11 14 1.8977 3.2140 -3.8044 12 1 1.2666 1.8721 -3.7234 13 1 1.5534 3.8452 -5.1038 14 1 1.3984 4.0637 -2.6937 15 6 4.0988 2.4918 0.0513 16 6 3.3816 1.2957 0.7256 17 1 3.9158 0.3641 0.5390 18 7 3.2167 1.5250 2.1632 19 6 4.2040 1.1888 3.0168 20 8 5.2288 0.6960 2.5949 21 6 4.0342 1.4242 4.4955 22 6 5.2716 0.9647 5.2228 23 6 6.2357 1.8749 5.6284 24 6 7.3571 1.4169 6.2933 25 7 7.5164 0.1317 6.5427 26 6 6.6214 -0.7628 6.1724 27 6 5.4706 -0.3785 5.5074 28 17 4.2939 -1.5622 5.0301 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6143 2.4138 -1.8262 33 1 2.4699 0.8661 -2.0746 34 1 5.4431 2.8182 -4.6906 35 1 5.1801 2.3746 0.1219 36 1 3.7888 3.4302 0.5109 37 1 2.3970 1.9188 2.5006 38 1 3.8784 2.4873 4.6787 39 1 3.1719 0.8632 4.8562 40 1 6.1113 2.9288 5.4278 41 1 8.1126 2.1198 6.6120 42 1 6.7867 -1.8069 6.3938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082137650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:25 Heat of formation + Delta-G solvation = -12.560423 kcal Electronic energy + Delta-G solvation = -27124.946894 eV Core-core repulsion = 23132.368518 eV Total energy + Delta-G solvation = -3992.578376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78597 -39.76461 -38.46315 -36.88113 -36.25044 -34.30076 -34.11618 -32.11901 -31.34476 -29.68396 -28.69329 -27.54907 -26.36544 -24.02184 -23.86162 -22.85505 -21.09621 -20.76629 -20.17172 -17.85513 -17.26549 -17.20694 -17.15375 -16.65040 -16.34295 -16.06684 -15.10377 -15.00416 -14.83371 -14.42300 -14.31978 -14.24931 -13.95412 -13.47343 -13.33170 -13.09122 -12.94379 -12.59094 -12.26098 -12.18609 -12.08773 -11.83098 -11.76779 -11.48339 -11.28269 -11.16253 -10.63564 -10.40779 -10.20617 -9.92492 -9.88720 -9.73378 -9.43574 -9.24191 -9.21209 -8.96884 -8.46697 -7.15658 -6.40125 -3.22112 0.63739 0.76947 1.77957 2.59619 3.00895 3.38476 3.42472 3.46648 3.65007 3.79707 4.05939 4.11402 4.27904 4.57796 4.58993 4.63884 4.75112 4.86897 4.95449 5.02803 5.12239 5.14519 5.25434 5.26845 5.32460 5.40459 5.46252 5.48435 5.64244 5.73479 5.77002 5.81784 6.17106 6.19536 6.31600 6.49055 6.51004 6.68042 7.31970 7.45670 7.52635 7.62505 8.19648 8.30242 8.97748 9.52416 10.17024 11.09050 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.003002 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.253428 B = 9326.236337 C =10363.440812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.072 3.928 4 H 0.073 0.927 5 C 0.104 3.896 6 N -0.602 5.602 7 C -0.334 4.334 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.909 5.909 11 Si 1.050 2.950 12 H -0.292 1.292 13 H -0.296 1.296 14 H -0.294 1.294 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.108 0.892 18 N -0.716 5.716 19 C 0.519 3.481 20 O -0.522 6.522 21 C -0.110 4.110 22 C -0.011 4.011 23 C -0.149 4.149 24 C 0.102 3.898 25 N -0.472 5.472 26 C 0.114 3.886 27 C -0.073 4.073 28 Cl -0.049 7.049 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.397 0.603 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 -3.882 25.006 25.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.013 3.987 4 H 0.091 0.909 5 C -0.021 4.021 6 N -0.330 5.330 7 C -0.460 4.460 8 H 0.099 0.901 9 C -0.213 4.213 10 N -0.548 5.548 11 Si 0.883 3.117 12 H -0.220 1.220 13 H -0.224 1.224 14 H -0.222 1.222 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.126 0.874 18 N -0.367 5.367 19 C 0.304 3.696 20 O -0.397 6.397 21 C -0.150 4.150 22 C -0.020 4.020 23 C -0.169 4.169 24 C -0.055 4.055 25 N -0.181 5.181 26 C -0.044 4.044 27 C -0.102 4.102 28 Cl -0.020 7.020 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.231 0.769 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.181 0.819 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.186 -4.564 23.921 24.898 hybrid contribution -0.416 0.527 0.696 0.967 sum -5.602 -4.038 24.617 25.567 Atomic orbital electron populations 1.22798 0.81358 1.02616 0.99930 1.87958 1.19407 1.26988 1.94904 1.23405 0.93791 0.84612 0.96906 0.90928 1.22027 0.89437 0.96601 0.94081 1.44607 1.20862 1.65517 1.02059 1.20033 0.97625 1.41378 0.86978 0.90135 1.25734 1.06139 0.98888 0.90514 1.70876 1.08081 1.47522 1.28324 0.84030 0.77181 0.76344 0.74167 1.22017 1.22419 1.22195 1.21852 0.98447 0.93732 0.85697 1.22332 0.95508 1.01236 0.77741 0.87397 1.45827 1.19263 1.64493 1.07138 1.20117 0.83767 0.78326 0.87413 1.90778 1.27685 1.42459 1.78753 1.20755 0.96945 1.04611 0.92708 1.19603 0.95916 0.91593 0.94921 1.22068 0.94353 1.00999 0.99515 1.22848 0.96043 0.92289 0.94274 1.67806 1.28762 1.02710 1.18786 1.22757 0.87824 1.00144 0.93679 1.21967 0.94662 0.90766 1.02818 1.98391 1.56664 1.56372 1.90582 0.93789 0.89700 0.94290 0.95141 0.92569 0.92403 0.92519 0.95656 0.76894 0.86982 0.87070 0.83773 0.81910 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.85 101.05 1.10 1.45 16 2 O -0.37 -6.05 10.44 -35.23 -0.37 -6.42 16 3 C 0.07 1.20 3.06 -24.89 -0.08 1.13 16 4 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 5 C 0.10 2.29 4.72 -3.06 -0.01 2.28 16 6 N -0.60 -14.88 3.29 -170.07 -0.56 -15.44 16 7 C -0.33 -9.62 10.41 -15.06 -0.16 -9.78 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C -0.01 -0.33 5.41 -17.43 -0.09 -0.42 16 10 N -0.91 -28.44 13.70 55.49 0.76 -27.68 16 11 Si 1.05 26.31 24.71 -169.99 -4.20 22.11 16 12 H -0.29 -6.92 6.70 56.52 0.38 -6.54 16 13 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.29 -6.95 6.84 56.52 0.39 -6.56 16 15 C 0.13 2.66 6.93 -2.53 -0.02 2.64 16 16 C 0.14 2.35 3.04 -65.78 -0.20 2.15 16 17 H 0.11 2.15 7.73 -51.93 -0.40 1.75 16 18 N -0.72 -9.06 5.23 -51.73 -0.27 -9.33 16 19 C 0.52 6.84 7.72 -10.99 -0.08 6.75 16 20 O -0.52 -9.29 15.72 5.56 0.09 -9.20 16 21 C -0.11 -0.96 5.35 -29.04 -0.16 -1.12 16 22 C -0.01 -0.12 4.45 -104.28 -0.46 -0.58 16 23 C -0.15 -1.33 9.78 -39.45 -0.39 -1.72 16 24 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 25 N -0.47 -5.22 10.36 -13.22 -0.14 -5.36 16 26 C 0.11 1.20 10.99 -17.50 -0.19 1.01 16 27 C -0.07 -0.80 6.26 -39.35 -0.25 -1.05 16 28 Cl -0.05 -0.53 27.60 -51.86 -1.43 -1.96 16 29 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.03 0.69 3.91 -51.93 -0.20 0.49 16 33 H 0.06 1.35 7.78 -51.93 -0.40 0.94 16 34 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 3.59 8.51 -40.82 -0.35 3.24 16 38 H 0.11 0.64 8.04 -51.93 -0.42 0.22 16 39 H 0.11 0.79 7.45 -51.93 -0.39 0.40 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -36.18 364.58 -7.37 -43.54 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.55 Total: 0.76 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.19 Total: 3.48 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.21 Total: -57.81 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.28 Total: -15.62 kcal Atomic # 14 Polarization: 26.31 SS G_CDS: -4.20 Total: 22.11 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.18 -7.37 -43.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082137650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.984 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds