Wall clock time and date at job start Tue Mar 31 2020 22:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42900 * 114.00243 * 2 1 4 4 H 1.08998 * 110.63671 * 26.86050 * 3 2 1 5 5 C 1.54332 * 110.85296 * 263.69445 * 3 2 1 6 6 N 1.47021 * 107.26555 * 219.66954 * 5 3 2 7 7 C 1.36933 * 125.65083 * 178.84852 * 6 5 3 8 8 H 1.07992 * 120.00550 * 189.39056 * 7 6 5 9 9 C 1.38817 * 119.99719 * 9.38726 * 7 6 5 10 10 N 1.31620 * 120.00119 * 209.16582 * 9 7 6 11 11 Si 1.86802 * 119.99832 * 29.16967 * 9 7 6 12 12 H 1.48503 * 109.46877 * 275.35104 * 11 9 7 13 13 H 1.48501 * 109.47185 * 155.35304 * 11 9 7 14 14 H 1.48496 * 109.47348 * 35.35086 * 11 9 7 15 15 C 1.47429 * 108.70372 * 358.58677 * 6 5 3 16 16 C 1.54911 * 104.83029 * 24.35416 * 15 6 5 17 17 H 1.09001 * 111.00755 * 81.06846 * 16 15 6 18 18 N 1.46502 * 111.00285 * 204.91590 * 16 15 6 19 19 C 1.34774 * 120.00030 * 273.54906 * 18 16 15 20 20 O 1.21281 * 120.00091 * 359.97438 * 19 18 16 21 21 C 1.50697 * 119.99849 * 180.02562 * 19 18 16 22 22 C 1.50701 * 109.47347 * 179.97438 * 21 19 18 23 23 C 1.38653 * 120.79613 * 99.99311 * 22 21 19 24 24 C 1.38181 * 119.17598 * 179.97438 * 23 22 21 25 25 N 1.31882 * 120.79970 * 0.02562 * 24 23 22 26 26 C 1.31846 * 121.73500 * 359.97438 * 25 24 23 27 27 C 1.38351 * 120.74645 * 359.75014 * 26 25 24 28 28 Cl 1.73600 * 120.43496 * 180.28544 * 27 26 25 29 29 H 1.09008 * 109.47519 * 59.99902 * 1 2 3 30 30 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47267 * 299.99956 * 1 2 3 32 32 H 1.09004 * 109.98826 * 100.19707 * 5 3 2 33 33 H 1.08999 * 109.77703 * 339.02655 * 5 3 2 34 34 H 0.96999 * 119.99811 * 4.90321 * 10 9 7 35 35 H 1.08996 * 110.36839 * 143.19487 * 15 6 5 36 36 H 1.08997 * 110.36804 * 265.40805 * 15 6 5 37 37 H 0.97004 * 119.99841 * 93.54809 * 18 16 15 38 38 H 1.09000 * 109.47323 * 299.99760 * 21 19 18 39 39 H 1.09006 * 109.47571 * 60.00031 * 21 19 18 40 40 H 1.07996 * 120.40785 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.60449 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.62713 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3352 2.0265 0.4609 5 6 2.3784 1.7429 -1.4335 6 7 3.6685 2.4440 -1.3580 7 6 4.3540 2.9705 -2.4200 8 1 5.3626 3.3325 -2.2858 9 6 3.7525 3.0388 -3.6693 10 7 4.4892 2.9804 -4.7584 11 14 1.8977 3.2140 -3.8044 12 1 1.2666 1.8721 -3.7234 13 1 1.5534 3.8452 -5.1038 14 1 1.3984 4.0637 -2.6937 15 6 4.0988 2.4918 0.0513 16 6 3.3816 1.2957 0.7256 17 1 3.9158 0.3641 0.5390 18 7 3.2167 1.5250 2.1632 19 6 4.2040 1.1888 3.0168 20 8 5.2288 0.6960 2.5949 21 6 4.0342 1.4242 4.4955 22 6 5.2716 0.9647 5.2228 23 6 6.2357 1.8749 5.6284 24 6 7.3571 1.4169 6.2933 25 7 7.5164 0.1317 6.5427 26 6 6.6214 -0.7628 6.1724 27 6 5.4706 -0.3785 5.5074 28 17 4.2939 -1.5622 5.0301 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6143 2.4138 -1.8262 33 1 2.4699 0.8661 -2.0746 34 1 5.4431 2.8182 -4.6906 35 1 5.1801 2.3746 0.1219 36 1 3.7888 3.4302 0.5109 37 1 2.3970 1.9188 2.5006 38 1 3.8784 2.4873 4.6787 39 1 3.1719 0.8632 4.8562 40 1 6.1113 2.9288 5.4278 41 1 8.1126 2.1198 6.6120 42 1 6.7867 -1.8069 6.3938 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082137650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:24 Heat of formation + Delta-G solvation = -40.936605 kcal Electronic energy + Delta-G solvation = -27126.177378 eV Core-core repulsion = 23132.368518 eV Total energy + Delta-G solvation = -3993.808860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62345 -40.89392 -39.71597 -37.70491 -37.65137 -35.72419 -34.93168 -34.09443 -32.04948 -31.08248 -29.97553 -28.89655 -27.48399 -25.67967 -24.58384 -23.81693 -22.69751 -22.12814 -21.47207 -19.73607 -18.46923 -18.25063 -17.94435 -17.67493 -17.56622 -16.98100 -16.29792 -16.24539 -16.00641 -15.81770 -15.48842 -15.30213 -15.07676 -14.94864 -14.72505 -14.34625 -13.97905 -13.73618 -13.65345 -13.43274 -13.22255 -13.05037 -13.02835 -12.62364 -12.43851 -12.38025 -12.27821 -11.96514 -11.69918 -11.33108 -11.22235 -10.78848 -10.66980 -10.61714 -10.53831 -10.15486 -9.96091 -9.22489 -8.74446 -5.48130 -0.08903 0.04080 1.00401 1.36860 1.48395 1.59165 1.67845 1.98641 2.52298 2.57109 2.66438 2.96491 3.31471 3.34406 3.45419 3.49859 3.63825 3.69854 3.82816 3.91247 3.93445 4.20739 4.22538 4.30633 4.40156 4.47621 4.52698 4.57316 4.63160 4.64634 4.76392 4.76832 4.79798 4.88069 4.96030 5.05778 5.34367 5.50996 5.52478 6.02744 6.17110 6.49952 6.73606 6.80883 7.22868 7.38529 8.01752 8.75998 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.003002 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.253428 B = 9326.236337 C =10363.440812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.091 3.909 4 H 0.118 0.882 5 C 0.095 3.905 6 N -0.623 5.623 7 C -0.331 4.331 8 H 0.044 0.956 9 C -0.068 4.068 10 N -0.944 5.944 11 Si 1.097 2.903 12 H -0.272 1.272 13 H -0.302 1.302 14 H -0.264 1.264 15 C 0.131 3.869 16 C 0.154 3.846 17 H 0.073 0.927 18 N -0.700 5.700 19 C 0.517 3.483 20 O -0.574 6.574 21 C -0.099 4.099 22 C -0.027 4.027 23 C -0.148 4.148 24 C 0.094 3.906 25 N -0.495 5.495 26 C 0.100 3.900 27 C -0.088 4.088 28 Cl -0.055 7.055 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.027 0.973 34 H 0.250 0.750 35 H 0.026 0.974 36 H 0.051 0.949 37 H 0.421 0.579 38 H 0.153 0.847 39 H 0.133 0.867 40 H 0.174 0.826 41 H 0.191 0.809 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.832 -2.871 27.841 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.313 6.313 3 C 0.032 3.968 4 H 0.135 0.865 5 C -0.030 4.030 6 N -0.352 5.352 7 C -0.459 4.459 8 H 0.062 0.938 9 C -0.263 4.263 10 N -0.586 5.586 11 Si 0.923 3.077 12 H -0.198 1.198 13 H -0.230 1.230 14 H -0.190 1.190 15 C 0.004 3.996 16 C 0.047 3.953 17 H 0.091 0.909 18 N -0.353 5.353 19 C 0.304 3.696 20 O -0.452 6.452 21 C -0.138 4.138 22 C -0.036 4.036 23 C -0.168 4.168 24 C -0.062 4.062 25 N -0.204 5.204 26 C -0.058 4.058 27 C -0.117 4.117 28 Cl -0.026 7.026 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.259 0.741 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.191 0.809 41 H 0.207 0.793 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.525 -3.557 26.837 28.382 hybrid contribution 0.748 0.175 -0.134 0.780 sum -7.778 -3.381 26.703 28.017 Atomic orbital electron populations 1.23129 0.78818 1.04337 1.01463 1.87952 1.22191 1.26373 1.94770 1.23186 0.94181 0.86118 0.93317 0.86485 1.22196 0.88043 0.95231 0.97546 1.44593 1.22149 1.65553 1.02866 1.19894 0.96633 1.40540 0.88784 0.93770 1.27104 1.10275 0.98730 0.90215 1.70996 1.07379 1.50709 1.29501 0.83452 0.71779 0.77694 0.74807 1.19839 1.23029 1.18962 1.21945 0.97200 0.96347 0.84102 1.21717 0.95285 0.97897 0.80377 0.90927 1.45575 1.20390 1.64396 1.04903 1.20927 0.82678 0.76781 0.89171 1.90773 1.29873 1.44658 1.79926 1.20809 0.96996 1.07503 0.88534 1.19919 0.96959 0.91510 0.95217 1.22441 0.93558 1.02309 0.98461 1.23392 0.96915 0.92125 0.93810 1.67828 1.29232 1.03723 1.19613 1.22976 0.87983 1.00809 0.94004 1.22126 0.94842 0.91280 1.03417 1.98380 1.56776 1.56725 1.90699 0.93932 0.88117 0.90964 0.94409 0.95495 0.94095 0.95547 0.93165 0.74091 0.82889 0.84951 0.80859 0.79258 0.80918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.39 -11.55 10.44 -148.98 -1.55 -13.10 16 3 C 0.09 2.76 3.06 31.79 0.10 2.86 16 4 H 0.12 2.56 7.67 -2.39 -0.02 2.54 16 5 C 0.10 4.03 4.72 86.73 0.41 4.44 16 6 N -0.62 -30.92 3.29 -691.97 -2.28 -33.20 16 7 C -0.33 -19.72 10.41 84.04 0.87 -18.84 16 8 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 9 C -0.07 -4.11 5.41 84.86 0.46 -3.65 16 10 N -0.94 -61.41 13.70 21.65 0.30 -61.11 16 11 Si 1.10 52.69 24.71 68.60 1.70 54.38 16 12 H -0.27 -12.08 6.70 99.48 0.67 -11.41 16 13 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 14 H -0.26 -11.29 6.84 99.48 0.68 -10.61 16 15 C 0.13 5.29 6.93 86.85 0.60 5.89 16 16 C 0.15 5.06 3.04 46.38 0.14 5.20 16 17 H 0.07 2.94 7.73 -2.39 -0.02 2.92 16 18 N -0.70 -15.39 5.23 -435.96 -2.28 -17.67 16 19 C 0.52 12.39 7.72 87.66 0.68 13.07 16 20 O -0.57 -20.24 15.72 -3.03 -0.05 -20.29 16 21 C -0.10 -1.36 5.35 29.10 0.16 -1.20 16 22 C -0.03 -0.49 4.45 -19.64 -0.09 -0.58 16 23 C -0.15 -2.25 9.78 22.36 0.22 -2.03 16 24 C 0.09 1.56 11.18 84.67 0.95 2.50 16 25 N -0.49 -10.60 10.36 -195.75 -2.03 -12.63 16 26 C 0.10 2.08 10.99 84.72 0.93 3.01 16 27 C -0.09 -1.83 6.26 22.42 0.14 -1.69 16 28 Cl -0.05 -1.13 27.60 -2.72 -0.08 -1.20 16 29 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 0.94 8.11 -2.38 -0.02 0.92 16 32 H 0.04 1.58 3.91 -2.39 -0.01 1.57 16 33 H 0.03 1.29 7.78 -2.39 -0.02 1.27 16 34 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.42 5.36 8.51 -92.71 -0.79 4.57 16 38 H 0.15 0.87 8.04 -2.39 -0.02 0.85 16 39 H 0.13 1.30 7.45 -2.38 -0.02 1.29 16 40 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -84.91 364.58 0.69 -84.22 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.16 Total: 10.05 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.79 Total: 10.54 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.29 Total: -124.61 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.60 Total: -33.39 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 1.70 Total: 54.38 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -84.91 0.69 -84.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082137650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.287 kcal (2) G-P(sol) polarization free energy of solvation -84.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds