Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48504 * 109.47033 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47068 * 30.00050 * 3 2 1 6 6 H 1.48498 * 109.47460 * 150.00370 * 3 2 1 7 7 C 1.38813 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.46868 * 125.36474 * 0.03103 * 9 7 2 11 11 C 1.54193 * 106.39635 * 197.82051 * 10 9 7 12 12 H 1.08997 * 109.65064 * 89.90777 * 11 10 9 13 13 O 1.40787 * 110.22961 * 210.34021 * 11 10 9 14 14 C 1.41320 * 118.40331 * 67.69594 * 13 11 10 15 15 C 1.51775 * 111.63312 * 56.77388 * 14 13 11 16 16 N 1.44961 * 111.99539 * 319.66461 * 15 14 13 17 17 C 1.34777 * 117.32274 * 203.54467 * 16 15 14 18 18 O 1.21552 * 120.00087 * 181.48968 * 17 16 15 19 19 C 1.47879 * 120.00055 * 1.48473 * 17 16 15 20 20 N 1.32843 * 119.72165 * 353.52632 * 19 17 16 21 21 C 1.31365 * 121.68790 * 180.24189 * 20 19 17 22 22 C 1.39006 * 120.93361 * 359.48237 * 21 20 19 23 23 F 1.35100 * 120.32870 * 180.23131 * 22 21 20 24 24 C 1.38717 * 119.33867 * 0.24962 * 22 21 20 25 25 C 1.38832 * 118.45414 * 0.02562 * 24 22 21 26 26 F 1.35096 * 120.48825 * 180.02562 * 25 24 22 27 27 C 1.44539 * 125.35224 * 23.26461 * 16 15 14 28 28 H 1.09004 * 109.48705 * 106.13280 * 27 16 15 29 29 C 1.46785 * 125.36519 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99866 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.07231 * 317.05129 * 10 9 7 32 32 H 1.09000 * 110.07188 * 78.52750 * 10 9 7 33 33 H 1.09001 * 109.06414 * 177.47579 * 14 13 11 34 34 H 1.08996 * 109.06805 * 296.48088 * 14 13 11 35 35 H 1.09001 * 109.07190 * 198.92883 * 15 14 13 36 36 H 1.08993 * 108.80860 * 80.23307 * 15 14 13 37 37 H 1.08004 * 119.53471 * 179.75427 * 21 20 19 38 38 H 1.08007 * 120.77164 * 179.97438 * 24 22 21 39 39 H 1.08994 * 109.82904 * 59.37617 * 29 9 7 40 40 H 1.09004 * 109.82420 * 298.41275 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1367 -2.5255 -0.0007 11 6 -0.4384 -3.9682 0.4521 12 1 -0.5380 -3.9987 1.5371 13 8 -1.6321 -4.4243 -0.1388 14 6 -1.6531 -4.6338 -1.5363 15 6 -0.5762 -5.6104 -1.9720 16 7 0.6695 -5.3973 -1.2619 17 6 1.8010 -5.8268 -1.8550 18 8 2.8698 -5.6974 -1.2909 19 6 1.7421 -6.4556 -3.1922 20 7 0.5631 -6.7120 -3.7481 21 6 0.4658 -7.2736 -4.9316 22 6 1.6019 -7.6137 -5.6568 23 9 1.4876 -8.1866 -6.8749 24 6 2.8542 -7.3593 -5.1170 25 6 2.9263 -6.7701 -3.8620 26 9 4.1245 -6.5037 -3.2977 27 6 0.7982 -4.7567 0.0274 28 1 1.0095 -5.5088 0.7876 29 6 1.9374 -3.7224 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5793 -1.8143 0.6969 32 1 -0.5281 -2.3578 -1.0040 33 1 -2.6289 -5.0260 -1.8228 34 1 -1.4900 -3.6818 -2.0415 35 1 -0.3998 -5.4925 -3.0411 36 1 -0.9243 -6.6255 -1.7811 37 1 -0.5108 -7.4700 -5.3491 38 1 3.7522 -7.6145 -5.6601 39 1 2.5663 -3.8407 0.8818 40 1 2.5350 -3.8550 -0.9025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083122345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -45.986395 kcal Electronic energy + Delta-G solvation = -30614.042488 eV Core-core repulsion = 26068.217973 eV Total energy + Delta-G solvation = -4545.824515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.62635 -49.29317 -41.29728 -39.96612 -38.25091 -35.88961 -34.99110 -33.02277 -32.30696 -31.27825 -29.98497 -27.96378 -27.43307 -25.29838 -24.62308 -24.11701 -23.13706 -21.57132 -20.18824 -18.97483 -18.64389 -18.47736 -17.66654 -17.05470 -16.80650 -16.61528 -16.31751 -15.94250 -15.80556 -15.37074 -15.05739 -14.94430 -14.81383 -14.63996 -14.11686 -13.96628 -13.66086 -13.50672 -13.25913 -12.99022 -12.75001 -12.44615 -12.12563 -11.98496 -11.58614 -11.07966 -10.88099 -10.69079 -10.45846 -10.44869 -10.34359 -10.14095 -10.04532 -9.71993 -9.51566 -9.34959 -8.89959 -8.60080 -8.22993 -6.80533 -5.66838 -3.05337 -0.08759 0.33274 2.37402 2.77777 3.20030 3.27120 3.41471 3.46555 3.48830 3.52293 3.62381 4.01950 4.06660 4.22603 4.46351 4.51310 4.86308 4.99054 5.06485 5.19348 5.22636 5.31297 5.45262 5.56750 5.59571 5.73331 5.82050 5.83641 6.04889 6.09912 6.16107 6.27333 6.55153 6.77984 6.94698 7.09684 7.35080 7.38721 7.62329 7.75709 7.90932 8.15780 8.32370 9.22963 9.83144 10.45621 11.39869 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.003750 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.435264 B = 7465.869858 C = 8225.433580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.140 3.860 11 C 0.070 3.930 12 H 0.114 0.886 13 O -0.372 6.372 14 C 0.054 3.946 15 C 0.067 3.933 16 N -0.561 5.561 17 C 0.556 3.444 18 O -0.506 6.506 19 C 0.042 3.958 20 N -0.393 5.393 21 C 0.057 3.943 22 C 0.101 3.899 23 F -0.117 7.117 24 C -0.157 4.157 25 C 0.147 3.853 26 F -0.093 7.093 27 C 0.108 3.892 28 H 0.075 0.925 29 C 0.128 3.872 30 H 0.252 0.748 31 H 0.099 0.901 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.184 0.816 38 H 0.168 0.832 39 H 0.037 0.963 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -18.041 -11.070 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.014 3.986 11 C 0.011 3.989 12 H 0.132 0.868 13 O -0.289 6.289 14 C -0.024 4.024 15 C -0.056 4.056 16 N -0.293 5.293 17 C 0.341 3.659 18 O -0.381 6.381 19 C -0.096 4.096 20 N -0.104 5.104 21 C -0.104 4.104 22 C 0.079 3.921 23 F -0.095 7.095 24 C -0.184 4.184 25 C 0.123 3.877 26 F -0.070 7.070 27 C 0.004 3.996 28 H 0.093 0.907 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.040 0.960 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.201 0.799 38 H 0.186 0.814 39 H 0.054 0.946 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.049 -17.535 -10.125 20.351 hybrid contribution 1.585 0.577 -1.031 1.977 sum -0.465 -16.958 -11.156 20.304 Atomic orbital electron populations 1.69868 1.04838 1.24881 1.57593 1.24789 0.95748 0.97683 1.02345 0.86070 0.78608 0.83300 0.77529 1.21716 1.21625 1.20612 1.19086 0.90576 0.82183 1.43121 0.90311 1.44269 1.01374 1.00151 1.87300 1.22067 0.85230 0.90779 1.00500 1.23050 0.81983 0.95961 0.97924 0.86830 1.86838 1.34512 1.86422 1.21105 1.22349 0.98599 0.98478 0.82946 1.22537 0.84102 0.99616 0.99341 1.46600 1.06732 1.56327 1.19606 1.17599 0.84736 0.79870 0.83665 1.90870 1.28563 1.55025 1.63666 1.21684 0.88136 1.02414 0.97399 1.68466 1.23875 1.08132 1.09925 1.23324 0.98843 0.96992 0.91272 1.18754 0.94297 0.96616 0.82404 1.91587 1.96671 1.81399 1.39880 1.21688 0.99333 1.02020 0.95378 1.18258 0.82020 0.96240 0.91136 1.91686 1.41131 1.90320 1.83900 1.21683 0.99096 0.95555 0.83252 0.90713 1.21688 0.93225 0.84233 1.00671 0.93733 0.88293 0.96014 0.87968 0.92633 0.85846 0.91423 0.79873 0.81448 0.94551 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.18 55.49 0.56 -26.56 16 2 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.35 10.25 -15.06 -0.15 -6.50 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 9 N -0.60 -15.94 3.39 -171.42 -0.58 -16.52 16 10 C 0.14 3.44 5.26 -3.22 -0.02 3.42 16 11 C 0.07 1.38 3.91 -26.27 -0.10 1.28 16 12 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 13 O -0.37 -6.69 10.25 -34.36 -0.35 -7.04 16 14 C 0.05 0.80 6.73 36.54 0.25 1.05 16 15 C 0.07 0.93 5.10 -5.49 -0.03 0.91 16 16 N -0.56 -9.65 3.09 -170.22 -0.53 -10.18 16 17 C 0.56 9.63 6.91 -12.31 -0.09 9.55 16 18 O -0.51 -10.16 12.62 5.32 0.07 -10.09 16 19 C 0.04 0.57 6.57 -82.96 -0.55 0.03 16 20 N -0.39 -4.25 5.73 -9.70 -0.06 -4.31 16 21 C 0.06 0.43 11.17 -17.47 -0.20 0.24 16 22 C 0.10 0.78 7.35 -39.12 -0.29 0.49 16 23 F -0.12 -0.86 17.28 2.25 0.04 -0.82 16 24 C -0.16 -1.34 10.14 -39.18 -0.40 -1.74 16 25 C 0.15 1.78 7.31 -38.84 -0.28 1.49 16 26 F -0.09 -1.33 15.57 2.25 0.04 -1.29 16 27 C 0.11 2.08 3.30 -68.67 -0.23 1.85 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.13 2.93 6.05 -3.42 -0.02 2.91 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.10 2.73 6.25 -51.93 -0.32 2.41 16 32 H 0.02 0.58 6.48 -51.93 -0.34 0.25 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 35 H 0.12 1.59 4.89 -68.70 -0.34 1.26 16 36 H 0.07 0.83 8.06 -51.93 -0.42 0.42 16 37 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.30 5.36 -51.93 -0.28 1.02 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -33.15 327.12 -7.22 -40.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.13 Total: -0.50 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: -2.19 Total: 14.58 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.60 Total: -57.57 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.07 Total: -2.12 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.15 -7.22 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083122345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.611 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds