Wall clock time and date at job start Tue Mar 31 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00182 * 2 1 4 4 H 1.48504 * 109.47033 * 270.00200 * 3 2 1 5 5 H 1.48497 * 109.47068 * 30.00050 * 3 2 1 6 6 H 1.48498 * 109.47460 * 150.00370 * 3 2 1 7 7 C 1.38813 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.46868 * 125.36474 * 0.03103 * 9 7 2 11 11 C 1.54193 * 106.39635 * 197.82051 * 10 9 7 12 12 H 1.08997 * 109.65064 * 89.90777 * 11 10 9 13 13 O 1.40787 * 110.22961 * 210.34021 * 11 10 9 14 14 C 1.41320 * 118.40331 * 67.69594 * 13 11 10 15 15 C 1.51775 * 111.63312 * 56.77388 * 14 13 11 16 16 N 1.44961 * 111.99539 * 319.66461 * 15 14 13 17 17 C 1.34777 * 117.32274 * 203.54467 * 16 15 14 18 18 O 1.21552 * 120.00087 * 181.48968 * 17 16 15 19 19 C 1.47879 * 120.00055 * 1.48473 * 17 16 15 20 20 N 1.32843 * 119.72165 * 353.52632 * 19 17 16 21 21 C 1.31365 * 121.68790 * 180.24189 * 20 19 17 22 22 C 1.39006 * 120.93361 * 359.48237 * 21 20 19 23 23 F 1.35100 * 120.32870 * 180.23131 * 22 21 20 24 24 C 1.38717 * 119.33867 * 0.24962 * 22 21 20 25 25 C 1.38832 * 118.45414 * 0.02562 * 24 22 21 26 26 F 1.35096 * 120.48825 * 180.02562 * 25 24 22 27 27 C 1.44539 * 125.35224 * 23.26461 * 16 15 14 28 28 H 1.09004 * 109.48705 * 106.13280 * 27 16 15 29 29 C 1.46785 * 125.36519 * 180.02562 * 9 7 2 30 30 H 0.96997 * 119.99866 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.07231 * 317.05129 * 10 9 7 32 32 H 1.09000 * 110.07188 * 78.52750 * 10 9 7 33 33 H 1.09001 * 109.06414 * 177.47579 * 14 13 11 34 34 H 1.08996 * 109.06805 * 296.48088 * 14 13 11 35 35 H 1.09001 * 109.07190 * 198.92883 * 15 14 13 36 36 H 1.08993 * 108.80860 * 80.23307 * 15 14 13 37 37 H 1.08004 * 119.53471 * 179.75427 * 21 20 19 38 38 H 1.08007 * 120.77164 * 179.97438 * 24 22 21 39 39 H 1.08994 * 109.82904 * 59.37617 * 29 9 7 40 40 H 1.09004 * 109.82420 * 298.41275 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1367 -2.5255 -0.0007 11 6 -0.4384 -3.9682 0.4521 12 1 -0.5380 -3.9987 1.5371 13 8 -1.6321 -4.4243 -0.1388 14 6 -1.6531 -4.6338 -1.5363 15 6 -0.5762 -5.6104 -1.9720 16 7 0.6695 -5.3973 -1.2619 17 6 1.8010 -5.8268 -1.8550 18 8 2.8698 -5.6974 -1.2909 19 6 1.7421 -6.4556 -3.1922 20 7 0.5631 -6.7120 -3.7481 21 6 0.4658 -7.2736 -4.9316 22 6 1.6019 -7.6137 -5.6568 23 9 1.4876 -8.1866 -6.8749 24 6 2.8542 -7.3593 -5.1170 25 6 2.9263 -6.7701 -3.8620 26 9 4.1245 -6.5037 -3.2977 27 6 0.7982 -4.7567 0.0274 28 1 1.0095 -5.5088 0.7876 29 6 1.9374 -3.7224 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5793 -1.8143 0.6969 32 1 -0.5281 -2.3578 -1.0040 33 1 -2.6289 -5.0260 -1.8228 34 1 -1.4900 -3.6818 -2.0415 35 1 -0.3998 -5.4925 -3.0411 36 1 -0.9243 -6.6255 -1.7811 37 1 -0.5108 -7.4700 -5.3491 38 1 3.7522 -7.6145 -5.6601 39 1 2.5663 -3.8407 0.8818 40 1 2.5350 -3.8550 -0.9025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083122345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:14 Heat of formation + Delta-G solvation = -68.941889 kcal Electronic energy + Delta-G solvation = -30615.037913 eV Core-core repulsion = 26068.217973 eV Total energy + Delta-G solvation = -4546.819940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.27461 -50.24865 -42.50207 -41.05420 -39.60918 -37.65874 -36.32459 -34.47373 -33.59434 -32.23931 -31.65207 -29.58826 -29.08618 -26.80806 -25.82336 -25.20786 -24.47062 -22.98076 -21.82879 -20.35892 -19.54164 -19.37744 -19.10136 -18.60421 -18.22890 -17.62883 -17.27052 -17.07528 -16.78369 -16.64765 -16.50992 -16.30274 -15.99462 -15.72902 -15.62677 -15.30584 -15.06413 -14.58258 -14.50540 -14.41720 -14.01239 -13.83671 -13.76790 -13.49790 -13.07633 -12.90220 -12.81217 -12.31963 -12.15887 -12.11743 -11.87758 -11.79435 -11.29835 -11.10125 -10.91797 -10.75392 -10.25090 -10.20374 -9.58859 -8.93782 -7.85327 -5.27944 -0.93796 -0.38470 1.34800 1.43264 1.45175 1.54727 1.59628 2.27079 2.38840 2.45215 2.66540 2.73396 2.84894 3.18137 3.27567 3.37198 3.48361 3.71567 3.75184 3.76086 3.97393 4.07487 4.18624 4.27427 4.33107 4.37284 4.46307 4.57646 4.63425 4.86682 4.93940 4.95055 5.04939 5.25282 5.36551 5.46560 5.56569 5.66502 6.02306 6.18654 6.19619 6.42424 6.86978 7.05679 7.70177 8.31734 9.18994 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.003750 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.435264 B = 7465.869858 C = 8225.433580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.982 3.018 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.151 3.849 11 C 0.088 3.912 12 H 0.126 0.874 13 O -0.373 6.373 14 C 0.047 3.953 15 C 0.068 3.932 16 N -0.569 5.569 17 C 0.548 3.452 18 O -0.547 6.547 19 C 0.018 3.982 20 N -0.400 5.400 21 C 0.076 3.924 22 C 0.120 3.880 23 F -0.107 7.107 24 C -0.143 4.143 25 C 0.127 3.873 26 F -0.115 7.115 27 C 0.119 3.881 28 H 0.091 0.909 29 C 0.130 3.870 30 H 0.250 0.750 31 H 0.065 0.935 32 H -0.006 1.006 33 H 0.148 0.852 34 H 0.028 0.972 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.227 0.773 38 H 0.194 0.806 39 H 0.030 0.970 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -19.991 -13.226 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.025 3.975 11 C 0.028 3.972 12 H 0.144 0.856 13 O -0.290 6.290 14 C -0.029 4.029 15 C -0.053 4.053 16 N -0.301 5.301 17 C 0.336 3.664 18 O -0.425 6.425 19 C -0.118 4.118 20 N -0.111 5.111 21 C -0.086 4.086 22 C 0.098 3.902 23 F -0.085 7.085 24 C -0.169 4.169 25 C 0.104 3.896 26 F -0.093 7.093 27 C 0.014 3.986 28 H 0.109 0.891 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.012 0.988 33 H 0.165 0.835 34 H 0.046 0.954 35 H 0.155 0.845 36 H 0.112 0.888 37 H 0.244 0.756 38 H 0.211 0.789 39 H 0.048 0.952 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.135 -19.514 -12.290 23.274 hybrid contribution 1.870 1.091 -0.565 2.238 sum -1.265 -18.423 -12.855 22.500 Atomic orbital electron populations 1.70106 1.06084 1.25351 1.57894 1.25625 0.96699 1.00832 1.01999 0.85038 0.77663 0.78880 0.77485 1.21350 1.21287 1.19609 1.19385 0.90826 0.83646 1.43740 0.90751 1.44523 1.02342 1.00879 1.87160 1.21801 0.84103 0.93498 0.98072 1.22735 0.83036 0.92735 0.98697 0.85600 1.86843 1.33287 1.85932 1.22950 1.22692 1.01427 0.97833 0.80983 1.22787 0.82283 1.00455 0.99772 1.46743 1.08143 1.56068 1.19123 1.18186 0.84007 0.79277 0.84953 1.90829 1.29850 1.56773 1.65088 1.21112 0.89747 1.04636 0.96313 1.68302 1.22465 1.09018 1.11313 1.23985 1.00614 0.94385 0.89609 1.18720 0.93921 0.95230 0.82306 1.91631 1.96580 1.80987 1.39274 1.21892 1.01014 1.00286 0.93751 1.18469 0.80929 0.97710 0.92470 1.91628 1.42280 1.90831 1.84541 1.21412 0.97007 0.94899 0.85297 0.89071 1.21686 0.94451 0.83994 0.99411 0.94086 0.91658 0.98800 0.83493 0.95359 0.84498 0.88810 0.75626 0.78858 0.95231 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 10.18 21.65 0.22 -57.19 16 2 C -0.06 -3.42 5.48 84.86 0.47 -2.96 16 3 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.25 -14.74 10.25 84.03 0.86 -13.88 16 8 H 0.07 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -34.39 3.39 -696.26 -2.36 -36.75 16 10 C 0.15 7.76 5.26 86.71 0.46 8.21 16 11 C 0.09 3.50 3.91 30.90 0.12 3.62 16 12 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 13 O -0.37 -13.09 10.25 -145.86 -1.50 -14.58 16 14 C 0.05 1.34 6.73 71.58 0.48 1.82 16 15 C 0.07 1.78 5.10 86.26 0.44 2.22 16 16 N -0.57 -19.52 3.09 -810.74 -2.51 -22.02 16 17 C 0.55 19.33 6.91 86.80 0.60 19.93 16 18 O -0.55 -23.03 12.62 -3.88 -0.05 -23.08 16 19 C 0.02 0.48 6.57 41.88 0.28 0.75 16 20 N -0.40 -7.53 5.73 -184.60 -1.06 -8.58 16 21 C 0.08 0.83 11.17 84.95 0.95 1.78 16 22 C 0.12 1.35 7.35 22.57 0.17 1.52 16 23 F -0.11 -1.06 17.28 44.97 0.78 -0.29 16 24 C -0.14 -2.05 10.14 22.53 0.23 -1.82 16 25 C 0.13 3.00 7.31 22.75 0.17 3.16 16 26 F -0.11 -3.40 15.57 44.97 0.70 -2.70 16 27 C 0.12 4.63 3.30 45.56 0.15 4.78 16 28 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 29 C 0.13 6.24 6.05 86.63 0.52 6.77 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.07 3.79 6.25 -2.39 -0.01 3.77 16 32 H -0.01 -0.33 6.48 -2.39 -0.02 -0.34 16 33 H 0.15 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.03 0.96 6.73 -2.39 -0.02 0.94 16 35 H 0.14 3.23 4.89 -35.50 -0.17 3.06 16 36 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 37 H 0.23 0.49 8.06 -2.91 -0.02 0.46 16 38 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.83 5.36 -2.38 -0.01 1.82 16 Total: -1.00 -77.07 327.12 3.09 -73.98 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.95 Total: 6.21 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 5.88 Total: 35.90 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.70 Total: -124.54 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.54 Total: -37.66 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 1.48 Total: -2.99 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -77.07 3.09 -73.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083122345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.034 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds