Wall clock time and date at job start Tue Mar 31 2020 23:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.77975 * 2 1 4 4 C 1.54935 * 110.72062 * 236.75160 * 2 1 3 5 5 N 1.48535 * 103.22577 * 204.22424 * 4 2 1 6 6 C 1.38994 * 111.00104 * 159.72272 * 5 4 2 7 7 C 1.39071 * 119.68884 * 179.72910 * 6 5 4 8 8 C 1.38377 * 119.15601 * 179.79064 * 7 6 5 9 9 C 1.38758 * 118.53501 * 0.47560 * 8 7 6 10 10 C 1.38373 * 119.30695 * 359.74796 * 9 8 7 11 11 F 1.35092 * 119.60715 * 179.97438 * 10 9 8 12 12 N 1.32142 * 120.78723 * 0.02562 * 10 9 8 13 13 C 1.47910 * 105.81880 * 39.20746 * 5 4 2 14 14 C 1.53996 * 107.05707 * 334.67098 * 13 5 4 15 15 H 1.08999 * 110.39119 * 120.17725 * 14 13 5 16 16 N 1.46493 * 110.30584 * 242.30812 * 14 13 5 17 17 C 1.34784 * 119.99864 * 270.71398 * 16 14 13 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 14 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 14 20 20 S 1.81005 * 109.47244 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00090 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00308 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99747 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00171 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99848 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47396 * 59.99622 * 25 23 21 27 27 H 1.48504 * 109.46972 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46804 * 299.99684 * 25 23 21 29 29 H 1.09000 * 109.47349 * 296.74907 * 1 2 3 30 30 H 1.09003 * 109.47405 * 56.75004 * 1 2 3 31 31 H 1.08998 * 109.46954 * 176.75062 * 1 2 3 32 32 H 1.08992 * 110.67314 * 322.65952 * 4 2 1 33 33 H 1.09007 * 110.66582 * 85.62957 * 4 2 1 34 34 H 1.08004 * 120.42355 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.73666 * 180.21904 * 8 7 6 36 36 H 1.07999 * 120.35102 * 179.76600 * 9 8 7 37 37 H 1.08999 * 109.91623 * 215.31557 * 13 5 4 38 38 H 1.09001 * 109.91210 * 94.01826 * 13 5 4 39 39 H 0.97000 * 120.00740 * 90.44091 * 16 14 13 40 40 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 41 41 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 42 42 H 0.97000 * 119.99868 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0782 -0.7945 -1.2119 5 7 3.4318 -1.2092 -0.7623 6 6 3.8948 -2.2883 -1.5059 7 6 5.1514 -2.8207 -1.2383 8 6 5.5997 -3.8978 -1.9824 9 6 4.7776 -4.4024 -2.9798 10 6 3.5404 -3.8216 -3.1962 11 9 2.7354 -4.3077 -4.1660 12 7 3.1375 -2.7964 -2.4662 13 6 3.2894 -1.5709 0.6648 14 6 2.0771 -0.7928 1.2092 15 1 1.3202 -1.4821 1.5833 16 7 2.4971 0.1250 2.2709 17 6 2.5240 -0.2934 3.5519 18 8 2.1957 -1.4283 3.8260 19 6 2.9620 0.6488 4.6433 20 16 2.8896 -0.2016 6.2396 21 6 3.4375 1.0934 7.3012 22 1 3.6944 2.0579 6.8886 23 6 3.5391 0.8741 8.6680 24 7 3.2256 -0.3012 9.1711 25 14 4.1194 2.2473 9.7938 26 1 3.1929 3.4025 9.6837 27 1 4.1398 1.7616 11.1970 28 1 5.4863 2.6693 9.3956 29 1 -0.3634 0.4625 0.9177 30 1 -0.3634 0.5635 -0.8594 31 1 -0.3633 -1.0260 -0.0582 32 1 1.4560 -1.6664 -1.4137 33 1 2.1416 -0.1564 -2.0934 34 1 5.7684 -2.4007 -0.4576 35 1 6.5698 -4.3335 -1.7938 36 1 5.0997 -5.2399 -3.5808 37 1 4.1887 -1.2870 1.2113 38 1 3.1161 -2.6427 0.7606 39 1 2.7597 1.0327 2.0517 40 1 3.9837 0.9766 4.4520 41 1 2.3002 1.5147 4.6630 42 1 3.2970 -0.4546 10.1262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090677846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:20 Heat of formation + Delta-G solvation = -26.275712 kcal Electronic energy + Delta-G solvation = -26062.688739 eV Core-core repulsion = 22083.932119 eV Total energy + Delta-G solvation = -3978.756620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.34394 -41.22055 -39.66926 -38.23324 -34.78760 -33.01900 -32.96154 -32.44734 -30.36268 -29.74710 -27.80533 -26.33452 -25.49523 -23.75827 -23.59130 -21.83230 -20.69094 -20.14228 -18.28777 -17.92934 -17.59347 -16.98030 -16.49450 -16.39400 -16.28614 -15.91944 -15.26660 -14.90027 -14.82047 -14.56538 -14.06626 -14.00509 -13.73370 -13.44714 -13.34381 -13.16779 -12.92528 -12.84043 -12.64128 -12.50892 -12.30754 -12.02595 -11.47659 -11.25210 -11.07514 -11.05326 -11.00745 -10.77975 -10.51974 -10.17242 -9.93718 -9.84600 -9.46335 -9.09481 -9.03139 -8.58811 -8.26958 -6.52613 -6.23532 -3.94425 0.53088 0.72600 2.82017 2.98281 3.01284 3.17289 3.22176 3.26213 3.29304 3.52159 3.65950 4.07141 4.14781 4.18684 4.36417 4.51868 4.65311 4.69689 4.79451 4.93104 5.02342 5.10644 5.11668 5.18064 5.30619 5.32461 5.42778 5.45951 5.53307 5.55784 5.68224 5.71147 5.71970 5.82233 5.85831 5.91881 6.03860 6.11003 6.16735 6.56641 6.69122 7.27635 7.57388 7.63822 8.33079 8.53691 9.21778 10.83794 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002119 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.297181 B =13213.673628 C =13958.246292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.092 0.908 4 C 0.051 3.949 5 N -0.459 5.459 6 C 0.342 3.658 7 C -0.187 4.187 8 C -0.028 4.028 9 C -0.221 4.221 10 C 0.330 3.670 11 F -0.114 7.114 12 N -0.549 5.549 13 C 0.033 3.967 14 C 0.143 3.857 15 H 0.104 0.896 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.401 0.599 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -2.780 -25.876 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.076 4.076 5 N -0.177 5.177 6 C 0.110 3.890 7 C -0.210 4.210 8 C -0.053 4.053 9 C -0.243 4.243 10 C 0.176 3.824 11 F -0.093 7.093 12 N -0.270 5.270 13 C -0.093 4.093 14 C 0.037 3.963 15 H 0.122 0.878 16 N -0.383 5.383 17 C 0.319 3.681 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.744 -4.004 -25.454 25.778 hybrid contribution 1.107 1.635 0.206 1.986 sum 1.851 -2.368 -25.248 25.427 Atomic orbital electron populations 1.21758 0.93264 1.02498 1.02520 1.22447 0.96748 1.00040 0.93130 0.88971 1.23248 0.86972 0.99737 0.97620 1.62032 1.25752 1.26397 1.03525 1.19634 0.90618 0.88138 0.90628 1.21700 0.96395 0.99019 1.03846 1.21385 0.99209 0.93208 0.91542 1.21713 0.94497 1.04847 1.03291 1.17859 0.87015 0.90790 0.86757 1.91630 1.73408 1.85413 1.58808 1.66805 1.36997 1.12977 1.10186 1.23534 1.00944 0.99839 0.85031 1.21775 0.95049 0.92145 0.87358 0.87849 1.46085 1.70394 1.15750 1.06046 1.20385 0.76548 0.88474 0.82669 1.90708 1.46222 1.19756 1.82322 1.23533 1.04085 1.02199 1.00598 1.85393 1.87668 1.18361 0.91908 1.22821 1.51988 0.99508 0.94124 0.90958 1.24992 0.94942 0.96416 0.97219 1.70004 1.45177 1.21659 1.13454 0.86227 0.79244 0.81061 0.78987 1.19931 1.20816 1.19925 0.91699 0.91984 0.92220 0.90549 0.89167 0.83513 0.83320 0.83541 0.88351 0.91756 0.76447 0.89129 0.89155 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.16 37.16 0.34 -0.81 16 2 C -0.10 -0.90 3.37 -88.76 -0.30 -1.19 16 3 H 0.09 0.71 7.76 -51.93 -0.40 0.31 16 4 C 0.05 0.48 5.40 -1.90 -0.01 0.47 16 5 N -0.46 -4.70 5.29 -169.24 -0.90 -5.60 16 6 C 0.34 3.62 6.06 -155.02 -0.94 2.68 16 7 C -0.19 -1.62 9.46 -39.22 -0.37 -1.99 16 8 C -0.03 -0.19 10.16 -39.34 -0.40 -0.59 16 9 C -0.22 -1.68 10.08 -39.34 -0.40 -2.07 16 10 C 0.33 3.39 8.41 -17.37 -0.15 3.24 16 11 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 12 N -0.55 -6.30 8.46 -12.78 -0.11 -6.41 16 13 C 0.03 0.36 6.00 -2.75 -0.02 0.35 16 14 C 0.14 1.60 2.92 -66.58 -0.19 1.40 16 15 H 0.10 1.36 7.26 -51.93 -0.38 0.98 16 16 N -0.73 -8.92 5.01 -52.49 -0.26 -9.18 16 17 C 0.53 9.30 7.85 -10.98 -0.09 9.21 16 18 O -0.52 -11.08 15.51 5.56 0.09 -10.99 16 19 C -0.15 -2.96 6.16 36.00 0.22 -2.73 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 25 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 32 H 0.08 0.80 7.08 -51.93 -0.37 0.43 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.15 1.09 8.05 -52.48 -0.42 0.67 16 35 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 38 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 39 H 0.40 3.84 8.38 -40.82 -0.34 3.49 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -34.05 371.49 -9.80 -43.85 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.65 Total: 1.50 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.10 Total: -4.78 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.53 Total: -46.33 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.05 -9.80 -43.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090677846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.574 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds