Wall clock time and date at job start Tue Mar 31 2020 23:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.77975 * 2 1 4 4 C 1.54935 * 110.72062 * 236.75160 * 2 1 3 5 5 N 1.48535 * 103.22577 * 204.22424 * 4 2 1 6 6 C 1.38994 * 111.00104 * 159.72272 * 5 4 2 7 7 C 1.39071 * 119.68884 * 179.72910 * 6 5 4 8 8 C 1.38377 * 119.15601 * 179.79064 * 7 6 5 9 9 C 1.38758 * 118.53501 * 0.47560 * 8 7 6 10 10 C 1.38373 * 119.30695 * 359.74796 * 9 8 7 11 11 F 1.35092 * 119.60715 * 179.97438 * 10 9 8 12 12 N 1.32142 * 120.78723 * 0.02562 * 10 9 8 13 13 C 1.47910 * 105.81880 * 39.20746 * 5 4 2 14 14 C 1.53996 * 107.05707 * 334.67098 * 13 5 4 15 15 H 1.08999 * 110.39119 * 120.17725 * 14 13 5 16 16 N 1.46493 * 110.30584 * 242.30812 * 14 13 5 17 17 C 1.34784 * 119.99864 * 270.71398 * 16 14 13 18 18 O 1.21283 * 119.99649 * 359.72839 * 17 16 14 19 19 C 1.50694 * 119.99988 * 179.72721 * 17 16 14 20 20 S 1.81005 * 109.47244 * 179.97438 * 19 17 16 21 21 C 1.76192 * 100.00090 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00308 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99747 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00171 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99848 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47396 * 59.99622 * 25 23 21 27 27 H 1.48504 * 109.46972 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46804 * 299.99684 * 25 23 21 29 29 H 1.09000 * 109.47349 * 296.74907 * 1 2 3 30 30 H 1.09003 * 109.47405 * 56.75004 * 1 2 3 31 31 H 1.08998 * 109.46954 * 176.75062 * 1 2 3 32 32 H 1.08992 * 110.67314 * 322.65952 * 4 2 1 33 33 H 1.09007 * 110.66582 * 85.62957 * 4 2 1 34 34 H 1.08004 * 120.42355 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.73666 * 180.21904 * 8 7 6 36 36 H 1.07999 * 120.35102 * 179.76600 * 9 8 7 37 37 H 1.08999 * 109.91623 * 215.31557 * 13 5 4 38 38 H 1.09001 * 109.91210 * 94.01826 * 13 5 4 39 39 H 0.97000 * 120.00740 * 90.44091 * 16 14 13 40 40 H 1.08998 * 109.47224 * 299.99701 * 19 17 16 41 41 H 1.09002 * 109.47054 * 60.00213 * 19 17 16 42 42 H 0.97000 * 119.99868 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0782 -0.7945 -1.2119 5 7 3.4318 -1.2092 -0.7623 6 6 3.8948 -2.2883 -1.5059 7 6 5.1514 -2.8207 -1.2383 8 6 5.5997 -3.8978 -1.9824 9 6 4.7776 -4.4024 -2.9798 10 6 3.5404 -3.8216 -3.1962 11 9 2.7354 -4.3077 -4.1660 12 7 3.1375 -2.7964 -2.4662 13 6 3.2894 -1.5709 0.6648 14 6 2.0771 -0.7928 1.2092 15 1 1.3202 -1.4821 1.5833 16 7 2.4971 0.1250 2.2709 17 6 2.5240 -0.2934 3.5519 18 8 2.1957 -1.4283 3.8260 19 6 2.9620 0.6488 4.6433 20 16 2.8896 -0.2016 6.2396 21 6 3.4375 1.0934 7.3012 22 1 3.6944 2.0579 6.8886 23 6 3.5391 0.8741 8.6680 24 7 3.2256 -0.3012 9.1711 25 14 4.1194 2.2473 9.7938 26 1 3.1929 3.4025 9.6837 27 1 4.1398 1.7616 11.1970 28 1 5.4863 2.6693 9.3956 29 1 -0.3634 0.4625 0.9177 30 1 -0.3634 0.5635 -0.8594 31 1 -0.3633 -1.0260 -0.0582 32 1 1.4560 -1.6664 -1.4137 33 1 2.1416 -0.1564 -2.0934 34 1 5.7684 -2.4007 -0.4576 35 1 6.5698 -4.3335 -1.7938 36 1 5.0997 -5.2399 -3.5808 37 1 4.1887 -1.2870 1.2113 38 1 3.1161 -2.6427 0.7606 39 1 2.7597 1.0327 2.0517 40 1 3.9837 0.9766 4.4520 41 1 2.3002 1.5147 4.6630 42 1 3.2970 -0.4546 10.1262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090677846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:19 Heat of formation + Delta-G solvation = -49.415364 kcal Electronic energy + Delta-G solvation = -26063.692149 eV Core-core repulsion = 22083.932119 eV Total energy + Delta-G solvation = -3979.760031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09610 -42.00559 -40.76960 -39.28076 -35.78285 -34.56876 -33.98756 -33.65379 -31.38184 -30.77706 -28.89157 -27.63039 -27.04634 -24.50822 -24.36618 -22.71270 -21.61232 -21.33385 -19.76997 -19.00843 -18.46941 -18.00426 -17.62680 -17.20531 -17.11266 -16.86169 -16.72555 -16.45165 -16.19993 -15.70783 -15.31359 -14.75424 -14.74075 -14.53660 -14.49769 -14.16680 -14.00030 -13.70974 -13.59030 -13.51241 -13.20917 -13.15232 -13.05700 -12.85513 -12.62660 -12.37187 -11.99351 -11.83421 -11.70282 -11.18607 -11.11402 -10.96555 -10.86193 -10.69784 -10.25633 -10.20801 -9.34267 -8.64463 -8.33068 -6.10649 -0.16157 0.08067 1.28052 1.44963 1.47919 1.57394 1.59690 2.10227 2.25454 2.30218 2.49070 2.79836 3.01101 3.29779 3.35651 3.38029 3.62355 3.88116 3.92081 3.99045 4.01419 4.09911 4.14631 4.24516 4.33966 4.44381 4.54671 4.60722 4.64354 4.66428 4.71669 4.79419 4.87054 4.97076 5.07462 5.09938 5.22567 5.31872 5.40212 5.43539 5.51311 5.93548 6.21272 6.49590 6.55594 7.08441 7.23743 8.75713 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002119 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.297181 B =13213.673628 C =13958.246292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.111 0.889 4 C 0.055 3.945 5 N -0.457 5.457 6 C 0.316 3.684 7 C -0.190 4.190 8 C -0.020 4.020 9 C -0.208 4.208 10 C 0.302 3.698 11 F -0.122 7.122 12 N -0.573 5.573 13 C 0.041 3.959 14 C 0.142 3.858 15 H 0.082 0.918 16 N -0.700 5.700 17 C 0.538 3.462 18 O -0.563 6.563 19 C -0.129 4.129 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.187 0.813 36 H 0.175 0.825 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.419 0.581 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -1.038 -27.204 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.129 0.871 4 C -0.072 4.072 5 N -0.174 5.174 6 C 0.085 3.915 7 C -0.213 4.213 8 C -0.045 4.045 9 C -0.230 4.230 10 C 0.148 3.852 11 F -0.102 7.102 12 N -0.294 5.294 13 C -0.086 4.086 14 C 0.036 3.964 15 H 0.100 0.900 16 N -0.355 5.355 17 C 0.324 3.676 18 O -0.440 6.440 19 C -0.280 4.280 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.175 0.825 35 H 0.204 0.796 36 H 0.192 0.808 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.257 0.743 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.309 -2.228 -26.848 27.039 hybrid contribution 0.633 1.030 0.442 1.288 sum 2.942 -1.198 -26.406 26.596 Atomic orbital electron populations 1.21750 0.92731 1.02322 1.03052 1.22407 0.97050 1.00351 0.91094 0.87050 1.23204 0.86583 0.99322 0.98058 1.62108 1.25953 1.26598 1.02791 1.19844 0.91527 0.88990 0.91119 1.21978 0.95751 0.99369 1.04158 1.21843 1.00336 0.92118 0.90234 1.22071 0.93090 1.04759 1.03052 1.18231 0.88189 0.91457 0.87278 1.91603 1.73855 1.85515 1.59181 1.66681 1.38006 1.13842 1.10837 1.23355 1.00450 0.98877 0.85934 1.21833 0.94903 0.92121 0.87586 0.90036 1.45773 1.68572 1.16685 1.04433 1.20086 0.76303 0.87402 0.83821 1.90703 1.48628 1.21528 1.83187 1.23369 1.06007 1.02037 0.96628 1.85574 1.88089 1.21355 0.97354 1.23173 1.51717 0.99762 0.94698 0.89855 1.26115 0.94860 0.99131 0.99071 1.70175 1.46618 1.24158 1.13840 0.85027 0.79208 0.77540 0.76370 1.18701 1.20548 1.18606 0.92182 0.90190 0.93015 0.91997 0.88440 0.82451 0.79607 0.80754 0.88504 0.93197 0.74319 0.87005 0.87149 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.16 71.98 0.66 -1.44 16 2 C -0.09 -1.41 3.37 -9.59 -0.03 -1.44 16 3 H 0.11 1.38 7.76 -2.39 -0.02 1.37 16 4 C 0.06 0.99 5.40 86.65 0.47 1.46 16 5 N -0.46 -9.00 5.29 -689.36 -3.65 -12.65 16 6 C 0.32 6.53 6.06 133.04 0.81 7.34 16 7 C -0.19 -2.99 9.46 22.50 0.21 -2.78 16 8 C -0.02 -0.22 10.16 22.43 0.23 0.01 16 9 C -0.21 -2.72 10.08 22.43 0.23 -2.49 16 10 C 0.30 6.05 8.41 84.68 0.71 6.76 16 11 F -0.12 -2.58 17.29 44.97 0.78 -1.81 16 12 N -0.57 -13.12 8.46 -194.34 -1.64 -14.77 16 13 C 0.04 0.88 6.00 86.45 0.52 1.40 16 14 C 0.14 3.09 2.92 45.87 0.13 3.22 16 15 H 0.08 2.20 7.26 -2.39 -0.02 2.19 16 16 N -0.70 -16.13 5.01 -438.38 -2.19 -18.32 16 17 C 0.54 18.52 7.85 87.65 0.69 19.21 16 18 O -0.56 -24.79 15.51 -3.04 -0.05 -24.84 16 19 C -0.13 -4.85 6.16 71.23 0.44 -4.41 16 20 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 21 C -0.55 -30.56 9.50 67.95 0.65 -29.92 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -55.46 13.22 21.65 0.29 -55.18 16 25 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.06 1.31 7.08 -2.39 -0.02 1.29 16 33 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.16 2.07 8.05 -2.91 -0.02 2.04 16 35 H 0.19 0.63 8.06 -2.91 -0.02 0.60 16 36 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.10 2.11 7.92 -2.39 -0.02 2.10 16 38 H 0.05 1.21 7.75 -2.39 -0.02 1.20 16 39 H 0.42 6.82 8.38 -92.71 -0.78 6.04 16 40 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 41 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -77.14 371.49 0.84 -76.30 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.27 Total: 17.48 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 6.17 Total: -1.87 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -7.20 Total: -100.92 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -77.14 0.84 -76.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090677846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.887 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds