Wall clock time and date at job start Tue Mar 31 2020 23:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.78238 * 2 1 4 4 C 1.54326 * 110.72017 * 236.76445 * 2 1 3 5 5 N 1.47027 * 107.27048 * 219.44388 * 4 2 1 6 6 C 1.34771 * 125.64881 * 178.99269 * 5 4 2 7 7 O 1.21286 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00077 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46932 * 180.02562 * 8 6 5 10 10 C 1.76211 * 99.99563 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99983 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99431 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00469 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99696 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46816 * 60.00356 * 14 12 10 16 16 H 1.48498 * 109.46875 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47070 * 300.00416 * 14 12 10 18 18 C 1.47470 * 108.72436 * 358.97705 * 5 4 2 19 19 C 1.54911 * 104.80758 * 24.06591 * 18 5 4 20 20 H 1.09002 * 111.00298 * 81.14180 * 19 18 5 21 21 N 1.46503 * 111.00329 * 204.94801 * 19 18 5 22 22 C 1.38999 * 120.00302 * 270.42050 * 21 19 18 23 23 C 1.39070 * 119.68802 * 0.02578 * 22 21 19 24 24 C 1.38372 * 119.15467 * 179.97438 * 23 22 21 25 25 C 1.38760 * 118.53765 * 359.75028 * 24 23 22 26 26 C 1.38376 * 119.29978 * 0.49184 * 25 24 23 27 27 F 1.35104 * 119.60027 * 179.77111 * 26 25 24 28 28 N 1.32130 * 120.79381 * 359.49979 * 26 25 24 29 29 H 1.08996 * 109.47497 * 296.75921 * 1 2 3 30 30 H 1.09002 * 109.46736 * 56.75721 * 1 2 3 31 31 H 1.08999 * 109.47264 * 176.75245 * 1 2 3 32 32 H 1.09005 * 109.88338 * 338.86243 * 4 2 1 33 33 H 1.09000 * 109.88404 * 99.87456 * 4 2 1 34 34 H 1.09004 * 109.47047 * 299.99964 * 8 6 5 35 35 H 1.09000 * 109.47023 * 60.00547 * 8 6 5 36 36 H 0.96998 * 120.00139 * 179.97438 * 13 12 10 37 37 H 1.08996 * 110.34775 * 265.25304 * 18 5 4 38 38 H 1.08993 * 110.40811 * 142.91015 * 18 5 4 39 39 H 0.97001 * 119.99342 * 90.42301 * 21 19 18 40 40 H 1.08004 * 120.41901 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.73172 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.34821 * 180.24038 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 3.9925 -2.3833 -1.4899 7 8 3.7202 -2.5552 -2.6592 8 6 5.1673 -3.1007 -0.8766 9 16 5.9636 -4.1356 -2.1301 10 6 7.2636 -4.8354 -1.1681 11 1 7.3655 -4.5726 -0.1256 12 6 8.1559 -5.7251 -1.7502 13 7 8.0313 -6.0457 -3.0207 14 14 9.5345 -6.4665 -0.7306 15 1 8.9556 -7.2297 0.4041 16 1 10.3429 -7.3779 -1.5797 17 1 10.4011 -5.3807 -0.2060 18 6 3.4632 -1.2508 0.6881 19 6 2.0789 -0.7955 1.2137 20 1 1.4448 -1.6533 1.4378 21 7 2.2214 0.0694 2.3875 22 6 2.2525 -0.4867 3.6610 23 6 2.1483 -1.8651 3.8134 24 6 2.1810 -2.4070 5.0862 25 6 2.3226 -1.5498 6.1682 26 6 2.4159 -0.1874 5.9451 27 9 2.5492 0.6531 6.9944 28 7 2.3815 0.3010 4.7178 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5634 -0.8595 31 1 -0.3634 -1.0260 -0.0582 32 1 1.3129 -1.4758 -1.5777 33 1 2.3716 -0.1024 -1.9988 34 1 5.8835 -2.3699 -0.5008 35 1 4.8215 -3.7269 -0.0541 36 1 8.6551 -6.6672 -3.4275 37 1 4.1935 -0.4493 0.7994 38 1 3.7951 -2.1437 1.2177 39 1 2.2940 1.0303 2.2759 40 1 2.0432 -2.5044 2.9493 41 1 2.1026 -3.4740 5.2339 42 1 2.3556 -1.9416 7.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090961438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:56 Heat of formation + Delta-G solvation = -29.943778 kcal Electronic energy + Delta-G solvation = -26153.849155 eV Core-core repulsion = 22174.933476 eV Total energy + Delta-G solvation = -3978.915679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.27474 -40.79542 -39.88244 -37.93027 -35.20957 -33.14253 -32.84933 -32.45748 -30.08899 -29.54107 -28.33956 -26.23735 -25.44394 -24.09141 -23.83852 -22.26694 -20.88262 -19.51303 -18.57684 -17.95571 -17.71576 -16.77862 -16.66713 -16.35425 -16.33570 -15.75804 -15.27730 -15.03293 -14.82928 -14.39922 -14.31978 -14.03067 -13.79999 -13.62413 -13.56807 -13.42690 -13.12290 -12.78709 -12.57860 -12.43331 -12.37932 -11.95799 -11.78415 -11.50038 -11.11346 -11.07175 -11.05589 -10.79463 -10.69137 -10.07953 -10.04446 -9.85770 -9.51044 -9.08682 -8.65499 -8.28337 -8.19682 -6.54279 -6.24351 -3.95717 0.72617 0.95138 2.30906 2.85631 2.97466 3.21627 3.23572 3.27253 3.34571 3.51091 3.60924 3.91315 4.16031 4.18597 4.26493 4.39238 4.48618 4.70700 4.81581 4.86422 4.90026 4.92770 4.98939 5.10774 5.28914 5.33348 5.36608 5.42616 5.48488 5.51487 5.54700 5.65862 5.67988 5.80393 5.84821 5.86796 6.07428 6.12053 6.27103 6.49988 7.00379 7.51598 7.54059 7.56664 8.32126 8.45482 9.20827 10.83011 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.002828 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.740527 B = 9897.584945 C =12237.497453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.092 0.908 4 C 0.115 3.885 5 N -0.625 5.625 6 C 0.550 3.450 7 O -0.511 6.511 8 C -0.148 4.148 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.274 1.274 18 C 0.086 3.914 19 C 0.144 3.856 20 H 0.105 0.895 21 N -0.706 5.706 22 C 0.441 3.559 23 C -0.248 4.248 24 C -0.005 4.005 25 C -0.254 4.254 26 C 0.354 3.646 27 F -0.114 7.114 28 N -0.577 5.577 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.409 0.591 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 12.045 15.712 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.111 0.889 4 C -0.009 4.009 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.385 6.385 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.039 4.039 19 C 0.037 3.963 20 H 0.123 0.877 21 N -0.338 5.338 22 C 0.205 3.795 23 C -0.273 4.273 24 C -0.030 4.030 25 C -0.278 4.278 26 C 0.200 3.800 27 F -0.093 7.093 28 N -0.301 5.301 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.246 0.754 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.648 12.397 13.518 24.771 hybrid contribution 1.334 -0.444 2.382 2.766 sum -15.315 11.953 15.901 25.104 Atomic orbital electron populations 1.21770 0.92946 1.02768 1.02517 1.22486 0.97123 0.99800 0.93226 0.88946 1.21934 0.88270 0.94757 0.95920 1.48394 1.31001 1.46312 1.10640 1.20056 0.82641 0.77626 0.85845 1.90723 1.69656 1.62190 1.15882 1.23521 0.97758 1.02881 1.05651 1.85407 1.33643 1.52192 1.12024 1.22810 1.15474 1.31509 0.98656 0.90973 1.24987 0.97608 0.95648 0.95252 1.70003 1.36626 1.32732 1.10898 0.86229 0.80776 0.78920 0.79618 1.19894 1.20776 1.19915 1.22760 0.97227 1.01886 0.82043 1.22263 0.96203 0.93896 0.83947 0.87695 1.44377 1.78870 1.09686 1.00884 1.17762 0.88969 0.88131 0.84648 1.21535 1.12443 0.93938 0.99375 1.21243 0.90512 1.00416 0.90829 1.21518 1.12807 0.91706 1.01816 1.17636 0.94988 0.85331 0.82003 1.91628 1.92436 1.72279 1.52966 1.66179 1.24468 1.41445 0.97994 0.91941 0.91689 0.91895 0.90833 0.90996 0.89295 0.89271 0.92083 0.90727 0.89782 0.75415 0.84053 0.83628 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.16 37.16 0.34 -0.45 16 2 C -0.11 -0.72 3.18 -88.79 -0.28 -1.00 16 3 H 0.09 0.54 8.00 -51.93 -0.42 0.13 16 4 C 0.11 1.18 6.46 -3.06 -0.02 1.16 16 5 N -0.63 -8.22 3.33 -170.48 -0.57 -8.79 16 6 C 0.55 10.15 7.87 -10.99 -0.09 10.07 16 7 O -0.51 -11.47 16.19 5.55 0.09 -11.38 16 8 C -0.15 -2.94 5.16 36.01 0.19 -2.76 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 14 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.09 0.85 6.39 -2.50 -0.02 0.83 16 19 C 0.14 1.04 2.47 -65.78 -0.16 0.87 16 20 H 0.11 0.71 6.40 -51.93 -0.33 0.38 16 21 N -0.71 -5.24 5.39 -51.86 -0.28 -5.52 16 22 C 0.44 4.08 7.65 -155.01 -1.19 2.89 16 23 C -0.25 -1.98 9.24 -39.22 -0.36 -2.35 16 24 C 0.00 -0.03 10.16 -39.34 -0.40 -0.43 16 25 C -0.25 -2.03 10.08 -39.34 -0.40 -2.43 16 26 C 0.35 3.67 8.41 -17.37 -0.15 3.52 16 27 F -0.11 -1.22 17.29 2.25 0.04 -1.18 16 28 N -0.58 -6.37 10.40 -12.78 -0.13 -6.50 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 32 H 0.07 0.78 7.77 -51.93 -0.40 0.38 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 35 H 0.09 1.63 7.85 -51.92 -0.41 1.22 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 39 H 0.41 2.77 8.66 -40.82 -0.35 2.42 16 40 H 0.14 0.95 6.23 -52.48 -0.33 0.62 16 41 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -34.77 371.87 -9.63 -44.40 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.55 Total: -0.94 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.33 Total: -2.86 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.25 Total: -46.00 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.77 -9.63 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090961438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.453 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds