Wall clock time and date at job start Tue Mar 31 2020 23:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.78238 * 2 1 4 4 C 1.54326 * 110.72017 * 236.76445 * 2 1 3 5 5 N 1.47027 * 107.27048 * 219.44388 * 4 2 1 6 6 C 1.34771 * 125.64881 * 178.99269 * 5 4 2 7 7 O 1.21286 * 120.00259 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00077 * 180.02562 * 6 5 4 9 9 S 1.81006 * 109.46932 * 180.02562 * 8 6 5 10 10 C 1.76211 * 99.99563 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99983 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99431 * 179.97438 * 10 9 8 13 13 N 1.31629 * 120.00469 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99696 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46816 * 60.00356 * 14 12 10 16 16 H 1.48498 * 109.46875 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47070 * 300.00416 * 14 12 10 18 18 C 1.47470 * 108.72436 * 358.97705 * 5 4 2 19 19 C 1.54911 * 104.80758 * 24.06591 * 18 5 4 20 20 H 1.09002 * 111.00298 * 81.14180 * 19 18 5 21 21 N 1.46503 * 111.00329 * 204.94801 * 19 18 5 22 22 C 1.38999 * 120.00302 * 270.42050 * 21 19 18 23 23 C 1.39070 * 119.68802 * 0.02578 * 22 21 19 24 24 C 1.38372 * 119.15467 * 179.97438 * 23 22 21 25 25 C 1.38760 * 118.53765 * 359.75028 * 24 23 22 26 26 C 1.38376 * 119.29978 * 0.49184 * 25 24 23 27 27 F 1.35104 * 119.60027 * 179.77111 * 26 25 24 28 28 N 1.32130 * 120.79381 * 359.49979 * 26 25 24 29 29 H 1.08996 * 109.47497 * 296.75921 * 1 2 3 30 30 H 1.09002 * 109.46736 * 56.75721 * 1 2 3 31 31 H 1.08999 * 109.47264 * 176.75245 * 1 2 3 32 32 H 1.09005 * 109.88338 * 338.86243 * 4 2 1 33 33 H 1.09000 * 109.88404 * 99.87456 * 4 2 1 34 34 H 1.09004 * 109.47047 * 299.99964 * 8 6 5 35 35 H 1.09000 * 109.47023 * 60.00547 * 8 6 5 36 36 H 0.96998 * 120.00139 * 179.97438 * 13 12 10 37 37 H 1.08996 * 110.34775 * 265.25304 * 18 5 4 38 38 H 1.08993 * 110.40811 * 142.91015 * 18 5 4 39 39 H 0.97001 * 119.99342 * 90.42301 * 21 19 18 40 40 H 1.08004 * 120.41901 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.73172 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.34821 * 180.24038 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 3.9925 -2.3833 -1.4899 7 8 3.7202 -2.5552 -2.6592 8 6 5.1673 -3.1007 -0.8766 9 16 5.9636 -4.1356 -2.1301 10 6 7.2636 -4.8354 -1.1681 11 1 7.3655 -4.5726 -0.1256 12 6 8.1559 -5.7251 -1.7502 13 7 8.0313 -6.0457 -3.0207 14 14 9.5345 -6.4665 -0.7306 15 1 8.9556 -7.2297 0.4041 16 1 10.3429 -7.3779 -1.5797 17 1 10.4011 -5.3807 -0.2060 18 6 3.4632 -1.2508 0.6881 19 6 2.0789 -0.7955 1.2137 20 1 1.4448 -1.6533 1.4378 21 7 2.2214 0.0694 2.3875 22 6 2.2525 -0.4867 3.6610 23 6 2.1483 -1.8651 3.8134 24 6 2.1810 -2.4070 5.0862 25 6 2.3226 -1.5498 6.1682 26 6 2.4159 -0.1874 5.9451 27 9 2.5492 0.6531 6.9944 28 7 2.3815 0.3010 4.7178 29 1 -0.3634 0.4627 0.9175 30 1 -0.3633 0.5634 -0.8595 31 1 -0.3634 -1.0260 -0.0582 32 1 1.3129 -1.4758 -1.5777 33 1 2.3716 -0.1024 -1.9988 34 1 5.8835 -2.3699 -0.5008 35 1 4.8215 -3.7269 -0.0541 36 1 8.6551 -6.6672 -3.4275 37 1 4.1935 -0.4493 0.7994 38 1 3.7951 -2.1437 1.2177 39 1 2.2940 1.0303 2.2759 40 1 2.0432 -2.5044 2.9493 41 1 2.1026 -3.4740 5.2339 42 1 2.3556 -1.9416 7.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090961438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:55 Heat of formation + Delta-G solvation = -52.676717 kcal Electronic energy + Delta-G solvation = -26154.834930 eV Core-core repulsion = 22174.933476 eV Total energy + Delta-G solvation = -3979.901454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.01073 -41.56763 -40.83532 -39.06223 -36.01556 -34.59041 -34.00381 -33.49903 -30.99057 -30.73381 -29.09117 -27.75675 -26.94061 -24.83195 -24.50233 -23.00506 -21.54870 -20.80528 -19.61860 -19.20162 -18.65240 -18.01647 -17.60074 -17.08161 -17.00325 -16.88433 -16.65804 -16.39439 -16.12619 -15.81045 -15.09620 -14.99191 -14.66969 -14.57080 -14.40936 -14.29969 -14.18143 -14.03271 -13.59775 -13.34349 -13.19871 -13.12173 -12.95099 -12.86824 -12.65112 -12.44543 -12.12112 -11.75449 -11.71716 -11.32295 -11.13218 -11.01854 -10.74695 -10.68401 -10.29696 -9.78082 -8.82603 -8.68480 -8.34932 -6.13695 0.07116 0.35562 1.21324 1.42832 1.43946 1.51556 1.53603 1.70259 2.12797 2.26921 2.70207 2.90317 2.99270 3.19445 3.32084 3.44990 3.69472 3.77888 3.84312 3.90210 4.08118 4.16197 4.21727 4.26826 4.30644 4.40386 4.44934 4.58217 4.69623 4.75550 4.76914 4.84177 4.98031 4.98954 5.11554 5.25182 5.27292 5.36640 5.41083 5.52208 5.89589 6.19063 6.28330 6.39265 6.91098 7.06152 7.06977 8.74033 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.002828 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.740527 B = 9897.584945 C =12237.497453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.106 0.894 4 C 0.108 3.892 5 N -0.613 5.613 6 C 0.549 3.451 7 O -0.562 6.562 8 C -0.122 4.122 9 S -0.148 6.148 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.260 1.260 16 H -0.279 1.279 17 H -0.263 1.263 18 C 0.078 3.922 19 C 0.157 3.843 20 H 0.117 0.883 21 N -0.699 5.699 22 C 0.429 3.571 23 C -0.250 4.250 24 C -0.003 4.003 25 C -0.249 4.249 26 C 0.326 3.674 27 F -0.125 7.125 28 N -0.604 5.604 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.272 0.728 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.412 0.588 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 12.064 18.204 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.124 0.876 4 C -0.014 4.014 5 N -0.348 5.348 6 C 0.337 3.663 7 O -0.440 6.440 8 C -0.273 4.273 9 S 0.079 5.921 10 C -0.694 4.694 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.046 4.046 19 C 0.051 3.949 20 H 0.135 0.865 21 N -0.331 5.331 22 C 0.192 3.808 23 C -0.274 4.274 24 C -0.028 4.028 25 C -0.272 4.272 26 C 0.173 3.827 27 F -0.104 7.104 28 N -0.329 5.329 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.250 0.750 40 H 0.174 0.826 41 H 0.193 0.807 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.222 12.465 16.069 26.650 hybrid contribution 1.404 -0.361 1.659 2.203 sum -15.818 12.104 17.728 26.664 Atomic orbital electron populations 1.21749 0.91576 1.03034 1.03225 1.22420 0.97971 0.99707 0.90924 0.87551 1.22180 0.87047 0.94626 0.97584 1.48237 1.30450 1.44353 1.11779 1.19734 0.82787 0.78380 0.85421 1.90703 1.71029 1.64320 1.17941 1.23322 0.98241 1.02201 1.03509 1.85580 1.35161 1.54550 1.16822 1.23151 1.15618 1.31656 0.99025 0.89943 1.26112 1.00436 0.95983 0.96463 1.70170 1.37931 1.33609 1.13009 0.85028 0.77031 0.78168 0.77934 1.18428 1.20402 1.18809 1.23044 0.99274 1.02373 0.79909 1.22136 0.94506 0.94332 0.83966 0.86526 1.44292 1.78718 1.09798 1.00320 1.17978 0.89426 0.88692 0.84672 1.21800 1.11673 0.93561 1.00394 1.21646 0.89212 1.01797 0.90127 1.21796 1.11454 0.90741 1.03253 1.17980 0.96652 0.86219 0.81822 1.91594 1.92724 1.72742 1.53345 1.66091 1.25465 1.42634 0.98687 0.91113 0.91100 0.91894 0.91009 0.91559 0.87963 0.87232 0.91951 0.90265 0.89370 0.75027 0.82620 0.80654 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.16 71.98 0.66 -0.48 16 2 C -0.09 -0.98 3.18 -9.61 -0.03 -1.01 16 3 H 0.11 0.92 8.00 -2.39 -0.02 0.90 16 4 C 0.11 2.07 6.46 86.73 0.56 2.63 16 5 N -0.61 -15.28 3.33 -811.67 -2.70 -17.98 16 6 C 0.55 20.20 7.87 87.66 0.69 20.89 16 7 O -0.56 -25.93 16.19 -3.05 -0.05 -25.98 16 8 C -0.12 -4.80 5.16 71.24 0.37 -4.43 16 9 S -0.15 -8.17 20.57 -56.49 -1.16 -9.33 16 10 C -0.55 -30.88 9.50 67.95 0.65 -30.24 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.84 5.49 84.86 0.47 1.31 16 13 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 14 Si 1.00 43.02 29.55 68.60 2.03 45.05 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 18 C 0.08 1.35 6.39 86.85 0.55 1.91 16 19 C 0.16 1.82 2.47 46.38 0.11 1.94 16 20 H 0.12 1.16 6.40 -2.39 -0.02 1.15 16 21 N -0.70 -8.64 5.39 -317.99 -1.71 -10.35 16 22 C 0.43 7.02 7.65 133.04 1.02 8.04 16 23 C -0.25 -3.26 9.24 22.50 0.21 -3.05 16 24 C 0.00 -0.03 10.16 22.43 0.23 0.20 16 25 C -0.25 -3.43 10.08 22.43 0.23 -3.20 16 26 C 0.33 6.43 8.41 84.68 0.71 7.14 16 27 F -0.12 -2.65 17.29 44.97 0.78 -1.87 16 28 N -0.60 -12.66 10.40 -194.33 -2.02 -14.69 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.55 8.06 -2.39 -0.02 0.53 16 32 H 0.07 1.44 7.77 -2.38 -0.02 1.42 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.11 3.84 7.85 -2.39 -0.02 3.82 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.50 7.48 -2.39 -0.02 1.48 16 39 H 0.41 4.65 8.66 -92.71 -0.80 3.85 16 40 H 0.16 1.53 6.23 -2.91 -0.02 1.51 16 41 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -78.61 371.87 2.12 -76.50 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.25 Total: 12.27 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.42 Total: 1.64 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -6.15 Total: -98.28 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.05 Total: -25.98 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.16 Total: -9.33 kcal Total: -78.61 2.12 -76.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090961438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.822 kcal (2) G-P(sol) polarization free energy of solvation -78.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds