Wall clock time and date at job start Tue Mar 31 2020 22:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99721 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99698 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.85381 * 43.80417 * 15 14 13 17 17 C 1.53786 * 113.61591 * 175.00425 * 15 14 13 18 18 C 1.53777 * 87.08338 * 139.97703 * 17 15 14 19 19 H 1.09004 * 113.61130 * 89.11674 * 18 17 15 20 20 N 1.46498 * 113.61667 * 219.93092 * 18 17 15 21 21 C 1.38996 * 120.00180 * 204.99920 * 20 18 17 22 22 C 1.39065 * 119.68688 * 0.02562 * 21 20 18 23 23 C 1.38383 * 119.15281 * 179.97438 * 22 21 20 24 24 C 1.38755 * 118.53486 * 359.97438 * 23 22 21 25 25 C 1.38366 * 119.30903 * 0.02562 * 24 23 22 26 26 F 1.35093 * 119.60828 * 179.97438 * 25 24 23 27 27 N 1.32140 * 120.78847 * 359.74326 * 25 24 23 28 28 C 1.53779 * 87.08109 * 334.56829 * 18 17 15 29 29 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 31 31 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 32 32 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 33 33 H 1.09000 * 109.47102 * 300.00443 * 14 13 11 34 34 H 1.09006 * 109.46942 * 60.00242 * 14 13 11 35 35 H 1.09002 * 113.61139 * 254.52837 * 17 15 14 36 36 H 1.08999 * 113.61548 * 25.42656 * 17 15 14 37 37 H 0.96999 * 119.99476 * 25.00444 * 20 18 17 38 38 H 1.07994 * 120.42821 * 359.95167 * 22 21 20 39 39 H 1.08005 * 120.72875 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.34593 * 179.97438 * 24 23 22 41 41 H 1.09002 * 113.61247 * 270.87770 * 28 18 17 42 42 H 1.09006 * 113.61450 * 139.98484 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 2.3307 -7.7150 0.0325 15 6 3.5028 -8.6983 0.0378 16 1 4.2926 -8.4119 0.7322 17 6 3.0724 -10.1691 0.1671 18 6 4.1668 -10.4980 -0.8619 19 1 5.1392 -10.7039 -0.4144 20 7 3.7658 -11.5104 -1.8419 21 6 4.7309 -12.2818 -2.4788 22 6 6.0752 -12.0873 -2.1806 23 6 7.0266 -12.8617 -2.8209 24 6 6.6005 -13.8087 -3.7412 25 6 5.2468 -13.9498 -3.9905 26 9 4.8253 -14.8696 -4.8857 27 7 4.3611 -13.1988 -3.3600 28 6 4.0150 -9.0538 -1.3680 29 1 -0.4850 0.8400 -0.0004 30 1 3.1247 -3.7359 -0.8761 31 1 3.1246 -3.7266 0.9039 32 1 3.8012 -6.1834 0.0259 33 1 1.7219 -7.8710 0.9230 34 1 1.7223 -7.8791 -0.8570 35 1 3.2589 -10.5934 1.1536 36 1 2.0620 -10.3617 -0.1935 37 1 2.8268 -11.6424 -2.0462 38 1 6.3729 -11.3412 -1.4588 39 1 8.0777 -12.7318 -2.6089 40 1 7.3180 -14.4287 -4.2581 41 1 3.2623 -8.9415 -2.1484 42 1 4.9625 -8.5778 -1.6208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091325402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:53 Heat of formation + Delta-G solvation = -18.897242 kcal Electronic energy + Delta-G solvation = -24717.137055 eV Core-core repulsion = 20738.700390 eV Total energy + Delta-G solvation = -3978.436666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.36432 -40.85491 -39.82110 -38.79329 -35.35317 -33.90058 -32.89887 -32.44013 -30.17893 -29.42902 -27.14268 -26.20023 -25.47857 -24.25164 -23.74472 -21.92884 -20.65775 -19.93603 -18.62438 -18.00068 -17.82438 -16.68361 -16.53556 -16.43828 -16.30047 -15.95965 -15.60923 -15.29939 -15.12648 -14.81511 -14.43790 -14.03010 -13.92282 -13.66075 -13.57015 -13.25116 -12.98630 -12.87365 -12.66913 -12.55664 -12.26652 -11.86618 -11.60693 -11.21776 -11.05942 -11.05046 -10.86459 -10.76965 -10.66293 -10.15612 -10.07978 -9.83708 -9.42250 -9.07660 -8.90757 -8.25529 -8.24849 -6.51532 -6.22702 -3.93611 0.62477 0.85325 2.39379 3.01256 3.07911 3.22362 3.24282 3.26610 3.29850 3.48732 3.66688 3.95893 4.11125 4.14706 4.19365 4.28906 4.33049 4.38232 4.64810 4.73553 4.86812 4.97136 5.12301 5.14449 5.24029 5.25540 5.28124 5.34053 5.38548 5.46972 5.57683 5.66446 5.71672 5.76253 5.87323 5.92623 6.08868 6.11811 6.45114 6.59132 6.96877 7.48043 7.57849 7.68034 8.33668 8.59200 9.22384 10.84653 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.001500 C = 0.001474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.845788 B =18666.258296 C =18992.342144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.120 4.120 16 H 0.102 0.898 17 C -0.134 4.134 18 C 0.128 3.872 19 H 0.113 0.887 20 N -0.706 5.706 21 C 0.441 3.559 22 C -0.251 4.251 23 C -0.006 4.006 24 C -0.259 4.259 25 C 0.356 3.644 26 F -0.114 7.114 27 N -0.580 5.580 28 C -0.149 4.149 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.408 0.592 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.624 -27.658 -2.325 32.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.009 3.991 15 C -0.139 4.139 16 H 0.120 0.880 17 C -0.173 4.173 18 C 0.022 3.978 19 H 0.130 0.870 20 N -0.337 5.337 21 C 0.204 3.796 22 C -0.276 4.276 23 C -0.032 4.032 24 C -0.283 4.283 25 C 0.202 3.798 26 F -0.093 7.093 27 N -0.304 5.304 28 C -0.188 4.188 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.245 0.755 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.618 -27.913 -2.400 31.150 hybrid contribution 2.765 1.200 -0.162 3.019 sum 16.383 -26.713 -2.562 31.441 Atomic orbital electron populations 1.70007 1.05952 1.27584 1.46726 1.24991 0.95027 0.99019 0.94512 0.86224 0.79240 0.81247 0.78786 1.19950 1.20794 1.19940 1.22829 0.94871 0.91678 1.59129 0.90975 1.85406 1.04942 0.96328 1.96722 1.23531 1.06566 0.95440 1.04885 1.20317 0.86532 0.86331 0.75142 1.90704 1.15421 1.85627 1.47498 1.45981 1.09892 1.05442 1.77971 1.21223 0.95040 0.80415 1.02426 1.22605 0.98710 0.94490 0.98110 0.87980 1.23340 0.99420 0.94979 0.99576 1.22654 0.99515 0.86413 0.89198 0.86955 1.44684 1.07780 1.37793 1.43409 1.17879 0.87883 0.86617 0.87181 1.21476 0.91674 1.06833 1.07649 1.21209 1.00110 0.90790 0.91068 1.21491 0.94400 1.05997 1.06394 1.17667 0.88355 0.86543 0.87199 1.91629 1.91493 1.62208 1.63929 1.66238 1.39882 1.10599 1.13634 1.23677 1.02662 0.95371 0.97130 0.92113 0.89255 0.89240 0.76849 0.91412 0.91495 0.90059 0.88873 0.75484 0.84171 0.83809 0.83897 0.89026 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.57 7.85 -10.99 -0.09 9.49 16 12 O -0.52 -11.59 15.86 5.56 0.09 -11.50 16 13 N -0.74 -8.95 5.56 -60.30 -0.33 -9.28 16 14 C 0.13 1.33 5.51 -4.05 -0.02 1.31 16 15 C -0.12 -0.70 3.76 -89.81 -0.34 -1.03 16 16 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 17 C -0.13 -0.65 7.39 -25.92 -0.19 -0.84 16 18 C 0.13 0.61 4.02 -67.12 -0.27 0.34 16 19 H 0.11 0.39 6.10 -51.93 -0.32 0.08 16 20 N -0.71 -4.69 5.53 -53.16 -0.29 -4.98 16 21 C 0.44 3.66 7.65 -155.02 -1.19 2.48 16 22 C -0.25 -1.55 9.28 -39.22 -0.36 -1.92 16 23 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 24 C -0.26 -1.73 10.08 -39.34 -0.40 -2.13 16 25 C 0.36 3.38 8.40 -17.37 -0.15 3.23 16 26 F -0.11 -1.14 17.29 2.25 0.04 -1.10 16 27 N -0.58 -6.06 10.40 -12.78 -0.13 -6.19 16 28 C -0.15 -0.85 7.43 -25.92 -0.19 -1.04 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 32 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.41 2.73 8.85 -40.82 -0.36 2.36 16 38 H 0.14 0.56 6.03 -52.49 -0.32 0.25 16 39 H 0.14 0.33 8.06 -52.48 -0.42 -0.10 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -35.92 376.34 -10.14 -46.06 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.50 Total: 0.51 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.17 Total: -6.24 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.03 Total: -45.77 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.92 -10.14 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091325402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.167 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds