Wall clock time and date at job start Tue Mar 31 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48507 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47015 * 300.00010 * 3 2 1 6 6 H 1.48497 * 109.47161 * 59.99995 * 3 2 1 7 7 C 1.38801 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99463 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00106 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47168 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00164 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99720 * 179.97438 * 11 10 9 14 14 C 1.46508 * 120.00013 * 180.02562 * 13 11 10 15 15 C 1.52991 * 109.47429 * 180.02562 * 14 13 11 16 16 H 1.09003 * 112.84801 * 316.19512 * 15 14 13 17 17 C 1.53781 * 113.61611 * 87.50116 * 15 14 13 18 18 C 1.54049 * 87.08031 * 139.97702 * 17 15 14 19 19 H 1.08992 * 113.69868 * 220.05225 * 18 17 15 20 20 N 1.46506 * 113.61276 * 89.07129 * 18 17 15 21 21 C 1.38998 * 119.99909 * 107.61716 * 20 18 17 22 22 C 1.39071 * 119.68846 * 0.02562 * 21 20 18 23 23 C 1.38372 * 119.15563 * 179.97438 * 22 21 20 24 24 C 1.38757 * 118.53548 * 0.02562 * 23 22 21 25 25 C 1.38367 * 119.30498 * 359.97438 * 24 23 22 26 26 F 1.35102 * 119.60102 * 180.02562 * 25 24 23 27 27 N 1.32137 * 120.79424 * 359.74066 * 25 24 23 28 28 C 1.53781 * 113.61529 * 184.99923 * 15 14 13 29 29 H 0.96996 * 120.00272 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47349 * 59.99569 * 10 9 7 31 31 H 1.09005 * 109.46645 * 299.99744 * 10 9 7 32 32 H 0.96996 * 120.00851 * 359.97438 * 13 11 10 33 33 H 1.08997 * 109.46666 * 59.99730 * 14 13 11 34 34 H 1.09002 * 109.46731 * 300.00370 * 14 13 11 35 35 H 1.09005 * 113.61471 * 254.53285 * 17 15 14 36 36 H 1.08996 * 113.61178 * 25.34627 * 17 15 14 37 37 H 0.97002 * 119.99888 * 287.62233 * 20 18 17 38 38 H 1.08005 * 120.41771 * 359.97438 * 22 21 20 39 39 H 1.07995 * 120.73122 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.34516 * 179.97438 * 24 23 22 41 41 H 1.09002 * 113.61445 * 334.56787 * 28 15 14 42 42 H 1.09002 * 113.61408 * 105.38518 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8442 -6.3430 0.0008 14 6 2.3305 -7.7151 0.0008 15 6 3.5024 -8.6985 0.0009 16 1 4.2927 -8.4153 -0.6944 17 6 4.0138 -9.0474 1.4087 18 6 4.1660 -10.4964 0.9085 19 1 3.8665 -11.2463 1.6406 20 7 5.4729 -10.7758 0.3082 21 6 6.3952 -11.5638 0.9867 22 6 6.0704 -12.0843 2.2348 23 6 6.9967 -12.8678 2.9003 24 6 8.2218 -13.1054 2.2936 25 6 8.4794 -12.5565 1.0499 26 9 9.6701 -12.7844 0.4535 27 7 7.5729 -11.8166 0.4360 28 6 3.0721 -10.1698 -0.1218 29 1 -0.4850 0.8400 -0.0004 30 1 3.1245 -3.7313 0.8904 31 1 3.1244 -3.7313 -0.8895 32 1 3.8009 -6.1835 -0.0003 33 1 1.7215 -7.8750 -0.8889 34 1 1.7221 -7.8752 0.8910 35 1 4.9611 -8.5702 1.6598 36 1 3.2610 -8.9299 2.1881 37 1 5.6946 -10.4107 -0.5627 38 1 5.1075 -11.8794 2.6789 39 1 6.7710 -13.2852 3.8704 40 1 8.9664 -13.7125 2.7870 41 1 2.0614 -10.3606 0.2391 42 1 3.2578 -10.5983 -1.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091429994.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:56 Heat of formation + Delta-G solvation = -16.937481 kcal Electronic energy + Delta-G solvation = -24825.242524 eV Core-core repulsion = 20846.890840 eV Total energy + Delta-G solvation = -3978.351684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.37561 -40.92307 -39.82551 -38.80572 -35.25435 -33.85294 -32.89758 -32.44013 -30.15494 -29.36740 -27.21417 -26.18472 -25.48288 -24.28970 -23.63692 -22.42582 -20.52940 -19.69090 -18.69881 -17.92973 -17.83789 -16.71178 -16.46333 -16.41605 -16.29201 -15.87673 -15.74295 -15.35613 -14.83800 -14.81395 -14.45140 -14.04631 -13.94156 -13.87095 -13.58206 -13.32872 -12.98516 -12.94284 -12.71308 -12.53972 -12.45506 -11.78937 -11.33637 -11.22924 -11.07999 -11.02998 -10.78358 -10.71113 -10.67035 -10.17102 -10.09283 -9.81491 -9.41022 -9.08944 -8.89709 -8.28210 -8.24518 -6.51240 -6.22976 -3.93458 0.61066 0.83399 2.31476 3.01857 3.08467 3.20718 3.22827 3.27450 3.32057 3.45912 3.67289 3.95657 4.13795 4.15298 4.19331 4.30431 4.36896 4.37223 4.64444 4.72760 4.93576 4.98285 5.12350 5.17140 5.24761 5.25179 5.30655 5.31958 5.39045 5.51035 5.57531 5.66851 5.71639 5.75415 5.88157 5.91974 6.07417 6.12840 6.44247 6.60443 6.93323 7.45645 7.58863 7.68870 8.34349 8.59791 9.22593 10.84533 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.001598 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.697716 B =17523.093705 C =18390.614160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.131 3.869 15 C -0.123 4.123 16 H 0.096 0.904 17 C -0.150 4.150 18 C 0.126 3.874 19 H 0.101 0.899 20 N -0.700 5.700 21 C 0.443 3.557 22 C -0.250 4.250 23 C -0.007 4.007 24 C -0.257 4.257 25 C 0.356 3.644 26 F -0.113 7.113 27 N -0.579 5.579 28 C -0.135 4.135 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.408 0.592 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.073 -28.920 4.978 32.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.007 3.993 15 C -0.142 4.142 16 H 0.114 0.886 17 C -0.189 4.189 18 C 0.020 3.980 19 H 0.119 0.881 20 N -0.331 5.331 21 C 0.206 3.794 22 C -0.274 4.274 23 C -0.032 4.032 24 C -0.281 4.281 25 C 0.202 3.798 26 F -0.092 7.092 27 N -0.303 5.303 28 C -0.174 4.174 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.245 0.755 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.121 0.879 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.953 -28.802 4.243 31.471 hybrid contribution 2.679 1.214 0.191 2.947 sum 14.632 -27.588 4.435 31.542 Atomic orbital electron populations 1.70024 1.05950 1.27355 1.46949 1.24995 0.95032 0.99045 0.94535 0.86116 0.79588 0.81870 0.77910 1.19621 1.20557 1.20553 1.22912 0.94948 0.91649 1.58840 0.90879 1.85387 1.04975 0.96362 1.96712 1.23532 1.06551 0.95470 1.04892 1.20310 0.86526 0.86325 0.75131 1.90701 1.15389 1.85643 1.47571 1.45995 1.09886 1.05497 1.77912 1.21262 0.95162 0.80446 1.02392 1.22837 0.98358 0.94783 0.98193 0.88593 1.23680 1.02485 0.95717 0.97048 1.21984 0.82079 0.97339 0.96611 0.88073 1.44275 1.13338 1.53329 1.22116 1.17786 0.85692 0.87678 0.88209 1.21511 1.03045 1.06374 0.96514 1.21215 0.91018 0.92305 0.98664 1.21504 1.00990 1.09061 0.96584 1.17651 0.81109 0.92633 0.88392 1.91633 1.41449 1.91918 1.84237 1.66205 1.03103 1.22149 1.38834 1.23318 0.99083 0.95030 0.99927 0.92230 0.89266 0.89268 0.76884 0.91507 0.91381 0.90650 0.88422 0.75529 0.84016 0.83768 0.83865 0.87861 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 12 O -0.52 -11.60 15.86 5.56 0.09 -11.52 16 13 N -0.74 -9.22 5.56 -60.29 -0.33 -9.56 16 14 C 0.13 1.33 5.51 -4.04 -0.02 1.30 16 15 C -0.12 -0.78 3.63 -89.81 -0.33 -1.10 16 16 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.15 -0.85 7.44 -25.78 -0.19 -1.05 16 18 C 0.13 0.61 4.13 -66.97 -0.28 0.33 16 19 H 0.10 0.37 6.10 -51.93 -0.32 0.05 16 20 N -0.70 -4.47 5.44 -53.01 -0.29 -4.76 16 21 C 0.44 3.58 7.65 -155.01 -1.19 2.40 16 22 C -0.25 -1.52 9.29 -39.22 -0.36 -1.88 16 23 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 24 C -0.26 -1.68 10.08 -39.34 -0.40 -2.08 16 25 C 0.36 3.31 8.40 -17.37 -0.15 3.17 16 26 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 27 N -0.58 -5.91 10.40 -12.78 -0.13 -6.04 16 28 C -0.13 -0.65 7.38 -25.92 -0.19 -0.84 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 32 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.55 7.89 -51.93 -0.41 0.14 16 37 H 0.41 2.61 8.82 -40.82 -0.36 2.25 16 38 H 0.14 0.58 6.03 -52.48 -0.32 0.26 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 376.22 15.07 5.67 5.67 Total: -1.00 -35.80 376.22 -10.13 -45.93 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.50 Total: 0.63 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.17 Total: -6.40 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.02 Total: -45.74 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.80 -10.13 -45.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091429994.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.996 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds