Wall clock time and date at job start Tue Mar 31 2020 23:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.37153 * 2 1 4 4 C 1.54374 * 110.51359 * 237.57364 * 2 1 3 5 5 H 1.09003 * 110.32701 * 336.32396 * 4 2 1 6 6 N 1.46500 * 110.32298 * 98.42650 * 4 2 1 7 7 C 1.34776 * 120.00278 * 205.00356 * 6 4 2 8 8 O 1.21274 * 119.99888 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99966 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46937 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99901 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99900 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00089 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99909 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99656 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47172 * 89.99602 * 15 13 11 17 17 H 1.48498 * 109.46685 * 209.99644 * 15 13 11 18 18 H 1.48495 * 109.47493 * 329.99809 * 15 13 11 19 19 C 1.54261 * 105.06202 * 217.32212 * 4 2 1 20 20 C 1.54376 * 105.06055 * 0.02562 * 19 4 2 21 21 N 1.48559 * 104.59585 * 23.85194 * 20 19 4 22 22 C 1.38997 * 110.99794 * 200.96209 * 21 20 19 23 23 C 1.39069 * 119.68965 * 295.43863 * 22 21 20 24 24 C 1.38377 * 119.15782 * 180.02562 * 23 22 21 25 25 C 1.38761 * 118.53160 * 0.02562 * 24 23 22 26 26 C 1.38364 * 119.30875 * 359.97438 * 25 24 23 27 27 F 1.35099 * 119.60473 * 180.02562 * 26 25 24 28 28 N 1.32142 * 120.79320 * 0.02712 * 26 25 24 29 29 H 1.08998 * 109.47329 * 299.11118 * 1 2 3 30 30 H 1.09003 * 109.46546 * 59.10527 * 1 2 3 31 31 H 1.08998 * 109.47321 * 179.10331 * 1 2 3 32 32 H 0.97008 * 120.00081 * 24.99978 * 6 4 2 33 33 H 1.08999 * 109.46725 * 299.99747 * 9 7 6 34 34 H 1.09001 * 109.47155 * 59.99597 * 9 7 6 35 35 H 0.97004 * 119.99887 * 180.02562 * 14 13 11 36 36 H 1.09007 * 110.31948 * 118.90075 * 19 4 2 37 37 H 1.08995 * 110.32222 * 241.10648 * 19 4 2 38 38 H 1.09004 * 110.41064 * 265.07445 * 20 19 4 39 39 H 1.08998 * 110.41352 * 142.63145 * 20 19 4 40 40 H 1.07997 * 120.41745 * 359.97438 * 23 22 21 41 41 H 1.07994 * 120.73410 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.34579 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0710 -0.7753 -1.2204 5 1 1.3269 -1.4878 -1.5766 6 7 2.4379 0.1541 -2.2918 7 6 2.4467 -0.2641 -3.5730 8 8 2.1515 -1.4099 -3.8390 9 6 2.8247 0.6919 -4.6751 10 16 2.7426 -0.1620 -6.2689 11 6 3.2174 1.1508 -7.3440 12 1 3.4508 2.1238 -6.9378 13 6 3.2925 0.9340 -8.7130 14 7 3.6476 1.9145 -9.5161 15 14 2.8894 -0.7493 -9.4155 16 1 1.4408 -0.8186 -9.7348 17 1 3.6803 -0.9716 -10.6525 18 1 3.2268 -1.7960 -8.4175 19 6 3.3210 -1.5163 -0.7027 20 6 3.4297 -1.1270 0.7872 21 7 2.0476 -0.7458 1.1764 22 6 2.0531 0.0565 2.3115 23 6 2.5055 -0.4627 3.5197 24 6 2.5057 0.3455 4.6429 25 6 2.0512 1.6508 4.5203 26 6 1.6149 2.1031 3.2876 27 9 1.1716 3.3731 3.1613 28 7 1.6264 1.3078 2.2324 29 1 -0.3634 0.4999 0.8978 30 1 -0.3632 0.5277 -0.8819 31 1 -0.3634 -1.0275 -0.0161 32 1 2.6743 1.0705 -2.0791 33 1 2.1334 1.5346 -4.6779 34 1 3.8391 1.0546 -4.5094 35 1 3.6997 1.7631 -10.4728 36 1 3.1911 -2.5939 -0.8036 37 1 4.2074 -1.1886 -1.2456 38 1 4.1063 -0.2813 0.9107 39 1 3.7703 -1.9770 1.3784 40 1 2.8515 -1.4839 3.5807 41 1 2.8519 -0.0313 5.5939 42 1 2.0383 2.3070 5.3781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091932638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:37 Heat of formation + Delta-G solvation = -22.339891 kcal Electronic energy + Delta-G solvation = -26275.421857 eV Core-core repulsion = 22296.835907 eV Total energy + Delta-G solvation = -3978.585950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.39611 -41.36299 -39.70091 -38.31530 -34.62741 -33.23829 -32.44180 -31.99399 -31.59961 -29.71364 -28.42407 -25.70062 -25.41811 -24.07163 -23.80474 -21.81220 -20.74955 -20.30181 -18.52697 -17.91233 -17.52007 -16.75259 -16.59615 -16.51423 -16.41350 -15.82885 -15.26784 -15.00443 -14.90668 -14.83399 -14.34707 -13.95600 -13.71958 -13.60832 -13.32952 -13.27363 -12.92511 -12.79687 -12.56616 -12.49950 -12.14959 -12.03756 -11.78897 -11.44884 -11.26440 -11.01005 -10.94598 -10.61086 -10.58468 -10.23836 -10.06065 -9.85876 -9.54058 -9.05178 -8.98856 -8.73188 -8.50732 -6.92183 -6.29002 -4.00825 0.42988 0.62504 2.65560 2.82015 2.92770 3.06590 3.21225 3.33193 3.48069 3.50420 3.70616 3.98454 4.08534 4.32959 4.38456 4.45260 4.53466 4.62912 4.71916 4.74471 4.87233 4.94777 5.10033 5.14111 5.17384 5.24892 5.28696 5.34866 5.43937 5.54408 5.57390 5.71018 5.75563 5.81671 5.85685 5.93880 5.98845 6.01493 6.11692 6.55551 6.60721 7.19653 7.56209 7.94037 8.41743 8.45722 9.17088 10.80222 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.002167 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.313187 B =12916.862879 C =13512.076422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.065 3.935 3 H 0.085 0.915 4 C 0.144 3.856 5 H 0.106 0.894 6 N -0.730 5.730 7 C 0.534 3.466 8 O -0.516 6.516 9 C -0.125 4.125 10 S -0.141 6.141 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 C -0.137 4.137 20 C 0.043 3.957 21 N -0.450 5.450 22 C 0.342 3.658 23 C -0.189 4.189 24 C -0.029 4.029 25 C -0.221 4.221 26 C 0.332 3.668 27 F -0.112 7.112 28 N -0.546 5.546 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 -3.293 32.014 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 H 0.103 0.897 4 C 0.038 3.962 5 H 0.124 0.876 6 N -0.385 5.385 7 C 0.320 3.680 8 O -0.390 6.390 9 C -0.275 4.275 10 S 0.085 5.915 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C -0.176 4.176 20 C -0.082 4.082 21 N -0.169 5.169 22 C 0.110 3.890 23 C -0.211 4.211 24 C -0.054 4.054 25 C -0.244 4.244 26 C 0.178 3.822 27 F -0.091 7.091 28 N -0.266 5.266 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.356 -5.272 30.653 31.192 hybrid contribution 0.862 1.953 0.531 2.200 sum -1.494 -3.319 31.184 31.396 Atomic orbital electron populations 1.21649 0.92466 1.02445 1.02391 1.22840 0.97378 0.96963 0.87048 0.89715 1.21680 0.96640 0.91636 0.86261 0.87643 1.46067 1.71849 1.14663 1.05895 1.20287 0.76305 0.88717 0.82735 1.90700 1.46418 1.19181 1.82723 1.23286 1.05112 1.01516 0.97608 1.84777 1.90666 1.19522 0.96490 1.22318 1.53234 0.97809 0.93548 0.89392 1.24721 0.93410 0.97359 0.95872 1.69939 1.45651 1.31796 1.04286 0.86728 0.79615 0.85058 0.80406 1.19199 1.19958 1.15921 1.22843 0.99225 1.02225 0.93343 1.23252 0.86510 1.01167 0.97263 1.62671 1.18851 1.33101 1.02239 1.19636 0.91176 0.85569 0.92604 1.21632 1.05497 1.02229 0.91789 1.21361 0.93217 0.91930 0.98925 1.21726 1.06528 0.98568 0.97538 1.17896 0.94230 0.80261 0.89826 1.91650 1.86356 1.34560 1.96508 1.66874 1.22142 1.05007 1.32542 0.92114 0.91508 0.91910 0.76639 0.88446 0.88475 0.91941 0.89535 0.89700 0.92466 0.88723 0.83623 0.83419 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 9.28 37.16 0.34 -1.02 16 2 C 0.07 0.66 2.15 -66.05 -0.14 0.52 16 3 H 0.08 0.91 6.76 -51.93 -0.35 0.56 16 4 C 0.14 1.62 2.96 -66.55 -0.20 1.42 16 5 H 0.11 1.39 7.26 -51.93 -0.38 1.01 16 6 N -0.73 -9.10 5.02 -52.47 -0.26 -9.36 16 7 C 0.53 9.17 7.85 -10.98 -0.09 9.08 16 8 O -0.52 -10.75 15.51 5.56 0.09 -10.67 16 9 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 11 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 12 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 13 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 14 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 15 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 19 C -0.14 -1.31 6.79 -25.35 -0.17 -1.48 16 20 C 0.04 0.33 6.04 -2.18 -0.01 0.32 16 21 N -0.45 -4.07 5.09 -161.36 -0.82 -4.89 16 22 C 0.34 3.08 5.98 -155.01 -0.93 2.15 16 23 C -0.19 -1.21 9.51 -39.22 -0.37 -1.58 16 24 C -0.03 -0.14 10.16 -39.34 -0.40 -0.54 16 25 C -0.22 -1.39 10.08 -39.34 -0.40 -1.78 16 26 C 0.33 3.09 8.40 -17.37 -0.15 2.94 16 27 F -0.11 -1.13 17.29 2.25 0.04 -1.09 16 28 N -0.55 -5.68 7.66 -12.78 -0.10 -5.78 16 29 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.40 4.07 8.38 -40.82 -0.34 3.73 16 33 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 34 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 36 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 38 H 0.06 0.43 7.97 -51.93 -0.41 0.02 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 42 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -34.30 367.69 -9.18 -43.48 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.66 Total: 1.20 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.07 Total: -4.13 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.41 Total: -45.84 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.30 -9.18 -43.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091932638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.140 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds