Wall clock time and date at job start Tue Mar 31 2020 23:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.37153 * 2 1 4 4 C 1.54374 * 110.51359 * 237.57364 * 2 1 3 5 5 H 1.09003 * 110.32701 * 336.32396 * 4 2 1 6 6 N 1.46500 * 110.32298 * 98.42650 * 4 2 1 7 7 C 1.34776 * 120.00278 * 205.00356 * 6 4 2 8 8 O 1.21274 * 119.99888 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99966 * 180.02562 * 7 6 4 10 10 S 1.80998 * 109.46937 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99901 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99900 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00089 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99909 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99656 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47172 * 89.99602 * 15 13 11 17 17 H 1.48498 * 109.46685 * 209.99644 * 15 13 11 18 18 H 1.48495 * 109.47493 * 329.99809 * 15 13 11 19 19 C 1.54261 * 105.06202 * 217.32212 * 4 2 1 20 20 C 1.54376 * 105.06055 * 0.02562 * 19 4 2 21 21 N 1.48559 * 104.59585 * 23.85194 * 20 19 4 22 22 C 1.38997 * 110.99794 * 200.96209 * 21 20 19 23 23 C 1.39069 * 119.68965 * 295.43863 * 22 21 20 24 24 C 1.38377 * 119.15782 * 180.02562 * 23 22 21 25 25 C 1.38761 * 118.53160 * 0.02562 * 24 23 22 26 26 C 1.38364 * 119.30875 * 359.97438 * 25 24 23 27 27 F 1.35099 * 119.60473 * 180.02562 * 26 25 24 28 28 N 1.32142 * 120.79320 * 0.02712 * 26 25 24 29 29 H 1.08998 * 109.47329 * 299.11118 * 1 2 3 30 30 H 1.09003 * 109.46546 * 59.10527 * 1 2 3 31 31 H 1.08998 * 109.47321 * 179.10331 * 1 2 3 32 32 H 0.97008 * 120.00081 * 24.99978 * 6 4 2 33 33 H 1.08999 * 109.46725 * 299.99747 * 9 7 6 34 34 H 1.09001 * 109.47155 * 59.99597 * 9 7 6 35 35 H 0.97004 * 119.99887 * 180.02562 * 14 13 11 36 36 H 1.09007 * 110.31948 * 118.90075 * 19 4 2 37 37 H 1.08995 * 110.32222 * 241.10648 * 19 4 2 38 38 H 1.09004 * 110.41064 * 265.07445 * 20 19 4 39 39 H 1.08998 * 110.41352 * 142.63145 * 20 19 4 40 40 H 1.07997 * 120.41745 * 359.97438 * 23 22 21 41 41 H 1.07994 * 120.73410 * 180.02562 * 24 23 22 42 42 H 1.08006 * 120.34579 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0710 -0.7753 -1.2204 5 1 1.3269 -1.4878 -1.5766 6 7 2.4379 0.1541 -2.2918 7 6 2.4467 -0.2641 -3.5730 8 8 2.1515 -1.4099 -3.8390 9 6 2.8247 0.6919 -4.6751 10 16 2.7426 -0.1620 -6.2689 11 6 3.2174 1.1508 -7.3440 12 1 3.4508 2.1238 -6.9378 13 6 3.2925 0.9340 -8.7130 14 7 3.6476 1.9145 -9.5161 15 14 2.8894 -0.7493 -9.4155 16 1 1.4408 -0.8186 -9.7348 17 1 3.6803 -0.9716 -10.6525 18 1 3.2268 -1.7960 -8.4175 19 6 3.3210 -1.5163 -0.7027 20 6 3.4297 -1.1270 0.7872 21 7 2.0476 -0.7458 1.1764 22 6 2.0531 0.0565 2.3115 23 6 2.5055 -0.4627 3.5197 24 6 2.5057 0.3455 4.6429 25 6 2.0512 1.6508 4.5203 26 6 1.6149 2.1031 3.2876 27 9 1.1716 3.3731 3.1613 28 7 1.6264 1.3078 2.2324 29 1 -0.3634 0.4999 0.8978 30 1 -0.3632 0.5277 -0.8819 31 1 -0.3634 -1.0275 -0.0161 32 1 2.6743 1.0705 -2.0791 33 1 2.1334 1.5346 -4.6779 34 1 3.8391 1.0546 -4.5094 35 1 3.6997 1.7631 -10.4728 36 1 3.1911 -2.5939 -0.8036 37 1 4.2074 -1.1886 -1.2456 38 1 4.1063 -0.2813 0.9107 39 1 3.7703 -1.9770 1.3784 40 1 2.8515 -1.4839 3.5807 41 1 2.8519 -0.0313 5.5939 42 1 2.0383 2.3070 5.3781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091932638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:37 Heat of formation + Delta-G solvation = -45.784588 kcal Electronic energy + Delta-G solvation = -26276.438495 eV Core-core repulsion = 22296.835907 eV Total energy + Delta-G solvation = -3979.602588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.05594 -42.04095 -40.77894 -39.26303 -35.67333 -34.67716 -33.80773 -32.93486 -32.34061 -30.89269 -29.30113 -27.86621 -26.35831 -24.64481 -24.42328 -22.67427 -21.63676 -21.42178 -19.87099 -19.19477 -18.29615 -17.82110 -17.59599 -17.19459 -17.09538 -17.06056 -16.69892 -16.32247 -16.13785 -15.71394 -15.51146 -14.99460 -14.92300 -14.70087 -14.38472 -14.27659 -14.03622 -13.83863 -13.48910 -13.34991 -13.10233 -13.07874 -12.99457 -12.92381 -12.67746 -12.61130 -12.32999 -11.86559 -11.76967 -11.17535 -11.12727 -11.03412 -10.81841 -10.65225 -10.54604 -10.18227 -9.32435 -8.99915 -8.51943 -6.22769 -0.10677 0.14361 0.97459 1.31605 1.45966 1.52730 1.54614 2.04243 2.24475 2.30455 2.52306 2.68937 2.86228 2.86579 3.25867 3.48263 3.69683 3.83293 3.92649 4.00461 4.03648 4.11749 4.17723 4.21009 4.25635 4.40626 4.45810 4.57345 4.63128 4.72720 4.74685 4.89774 4.93053 4.96391 5.05493 5.12169 5.17830 5.21616 5.42708 5.55785 5.70192 5.98342 6.11031 6.39065 6.62009 6.93023 7.14231 8.60497 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.002167 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.313187 B =12916.862879 C =13512.076422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.075 3.925 3 H 0.078 0.922 4 C 0.142 3.858 5 H 0.087 0.913 6 N -0.708 5.708 7 C 0.541 3.459 8 O -0.555 6.555 9 C -0.113 4.113 10 S -0.170 6.170 11 C -0.530 4.530 12 H 0.061 0.939 13 C 0.044 3.956 14 N -0.917 5.917 15 Si 0.916 3.084 16 H -0.263 1.263 17 H -0.259 1.259 18 H -0.235 1.235 19 C -0.134 4.134 20 C 0.050 3.950 21 N -0.452 5.452 22 C 0.317 3.683 23 C -0.181 4.181 24 C -0.019 4.019 25 C -0.209 4.209 26 C 0.298 3.702 27 F -0.127 7.127 28 N -0.575 5.575 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.277 0.723 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.121 0.879 40 H 0.169 0.831 41 H 0.189 0.811 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -4.667 34.985 35.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.033 4.033 3 H 0.096 0.904 4 C 0.037 3.963 5 H 0.105 0.895 6 N -0.361 5.361 7 C 0.327 3.673 8 O -0.433 6.433 9 C -0.264 4.264 10 S 0.056 5.944 11 C -0.678 4.678 12 H 0.079 0.921 13 C -0.161 4.161 14 N -0.555 5.555 15 Si 0.737 3.263 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.159 1.159 19 C -0.173 4.173 20 C -0.075 4.075 21 N -0.171 5.171 22 C 0.086 3.914 23 C -0.203 4.203 24 C -0.044 4.044 25 C -0.231 4.231 26 C 0.145 3.855 27 F -0.107 7.107 28 N -0.295 5.295 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.139 0.861 40 H 0.187 0.813 41 H 0.206 0.794 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.713 -6.608 33.675 34.360 hybrid contribution 0.667 2.473 -0.182 2.568 sum -1.046 -4.135 33.493 33.763 Atomic orbital electron populations 1.21578 0.92931 1.02175 1.01736 1.22630 0.96927 0.96542 0.87232 0.90406 1.21760 0.97371 0.91278 0.85932 0.89519 1.45837 1.70035 1.15606 1.04646 1.19882 0.76183 0.87643 0.83613 1.90691 1.48645 1.20512 1.83414 1.23276 1.06706 1.01645 0.94742 1.84665 1.90608 1.19476 0.99650 1.22469 1.52854 0.97860 0.94569 0.92083 1.25593 0.93324 1.00896 0.96329 1.70019 1.46786 1.33791 1.04927 0.85848 0.79694 0.80651 0.80061 1.18742 1.18329 1.15893 1.22782 0.97763 1.01962 0.94782 1.23285 0.86029 1.02185 0.95971 1.62753 1.19560 1.32972 1.01772 1.19864 0.92716 0.85446 0.93355 1.21966 1.04016 1.03357 0.91009 1.21850 0.91632 0.90876 1.00063 1.22068 1.04667 0.99536 0.96869 1.18281 0.96233 0.80022 0.90991 1.91604 1.86857 1.35526 1.96665 1.66707 1.23017 1.05978 1.33841 0.92775 0.92096 0.91938 0.75035 0.87100 0.86819 0.91367 0.89446 0.90157 0.92230 0.86091 0.81318 0.79377 0.81214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.28 71.98 0.67 -1.96 16 2 C 0.07 1.46 2.15 45.06 0.10 1.56 16 3 H 0.08 1.64 6.76 -2.39 -0.02 1.63 16 4 C 0.14 3.10 2.96 45.89 0.14 3.24 16 5 H 0.09 2.28 7.26 -2.39 -0.02 2.27 16 6 N -0.71 -17.03 5.02 -438.30 -2.20 -19.23 16 7 C 0.54 18.28 7.85 87.66 0.69 18.97 16 8 O -0.56 -23.06 15.51 -3.01 -0.05 -23.11 16 9 C -0.11 -4.23 6.16 71.24 0.44 -3.79 16 10 S -0.17 -8.59 18.55 -56.49 -1.05 -9.63 16 11 C -0.53 -30.96 10.04 67.96 0.68 -30.28 16 12 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 13 C 0.04 2.59 5.50 84.86 0.47 3.06 16 14 N -0.92 -56.14 13.97 21.65 0.30 -55.84 16 15 Si 0.92 45.09 27.74 68.60 1.90 46.99 16 16 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.24 -11.49 6.74 99.48 0.67 -10.82 16 19 C -0.13 -2.36 6.79 31.49 0.21 -2.15 16 20 C 0.05 0.65 6.04 86.45 0.52 1.17 16 21 N -0.45 -7.43 5.09 -664.43 -3.38 -10.82 16 22 C 0.32 5.14 5.98 133.04 0.79 5.94 16 23 C -0.18 -1.70 9.51 22.50 0.21 -1.48 16 24 C -0.02 -0.11 10.16 22.43 0.23 0.12 16 25 C -0.21 -2.07 10.08 22.43 0.23 -1.85 16 26 C 0.30 5.31 8.40 84.68 0.71 6.03 16 27 F -0.13 -2.62 17.29 44.97 0.78 -1.84 16 28 N -0.57 -11.60 7.66 -194.34 -1.49 -13.09 16 29 H 0.05 1.19 7.35 -2.39 -0.02 1.18 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.41 7.90 8.38 -92.70 -0.78 7.13 16 33 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 35 H 0.28 15.66 8.31 -92.70 -0.77 14.88 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.08 1.51 7.95 -2.39 -0.02 1.49 16 38 H 0.06 0.76 7.97 -2.38 -0.02 0.74 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.19 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.17 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -76.30 367.69 1.14 -75.16 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.24 Total: 12.85 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 6.09 Total: -1.44 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -6.77 Total: -98.98 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.11 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.63 kcal Total: -76.30 1.14 -75.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091932638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.377 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds