Wall clock time and date at job start Tue Mar 31 2020 22:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48500 * 109.47333 * 270.00063 * 3 2 1 5 5 H 1.48497 * 109.47229 * 30.00244 * 3 2 1 6 6 H 1.48501 * 109.46876 * 150.00114 * 3 2 1 7 7 C 1.38802 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00122 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47421 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99942 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00156 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.53774 * 113.61547 * 175.00124 * 15 14 13 17 17 C 1.53780 * 87.08445 * 139.97857 * 16 15 14 18 18 N 1.46492 * 113.61591 * 89.11556 * 17 16 15 19 19 C 1.38996 * 120.00451 * 155.00399 * 18 17 16 20 20 C 1.39069 * 119.68504 * 359.97438 * 19 18 17 21 21 C 1.38380 * 119.15738 * 180.02562 * 20 19 18 22 22 C 1.38757 * 118.53396 * 0.25426 * 21 20 19 23 23 C 1.38374 * 119.30150 * 359.49627 * 22 21 20 24 24 F 1.35104 * 119.59974 * 180.25365 * 23 22 21 25 25 N 1.32135 * 120.79629 * 0.51781 * 23 22 21 26 26 C 1.53780 * 113.60972 * 272.49488 * 15 14 13 27 27 H 0.97004 * 120.00629 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47168 * 60.00201 * 10 9 7 29 29 H 1.09001 * 109.47067 * 300.00207 * 10 9 7 30 30 H 0.97007 * 119.99860 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47141 * 60.00136 * 14 13 11 32 32 H 1.09001 * 109.46989 * 299.99986 * 14 13 11 33 33 H 1.08995 * 112.90942 * 43.74158 * 15 14 13 34 34 H 1.09002 * 113.61530 * 25.42618 * 16 15 14 35 35 H 1.09002 * 113.61248 * 254.52914 * 16 15 14 36 36 H 1.09004 * 113.61392 * 219.93645 * 17 16 15 37 37 H 0.97003 * 120.00140 * 335.00073 * 18 17 16 38 38 H 1.08000 * 120.42646 * 0.04480 * 20 19 18 39 39 H 1.08002 * 120.73050 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.34994 * 179.75200 * 22 21 20 41 41 H 1.09011 * 113.61266 * 105.47044 * 26 15 14 42 42 H 1.08994 * 113.61856 * 334.56673 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 6 3.5027 -8.6985 -0.0001 16 6 3.0724 -10.1697 0.1227 17 6 4.1663 -10.4939 -0.9084 18 7 5.4734 -10.7734 -0.3091 19 6 6.3961 -11.5597 -0.9890 20 6 6.0712 -12.0783 -2.2379 21 6 6.9978 -12.8602 -2.9049 22 6 8.2210 -13.1029 -2.2965 23 6 8.4807 -12.5513 -1.0543 24 9 9.6717 -12.7794 -0.4586 25 7 7.5760 -11.8085 -0.4414 26 6 4.0140 -9.0475 -1.4078 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7312 -0.8905 30 1 3.8011 -6.1834 -0.0006 31 1 1.7217 -7.8750 -0.8900 32 1 1.7223 -7.8752 0.8899 33 1 4.2939 -8.4155 0.6940 34 1 2.0617 -10.3606 -0.2382 35 1 3.2594 -10.5985 1.1072 36 1 3.8674 -11.2439 -1.6408 37 1 5.6952 -10.4096 0.5624 38 1 5.1082 -11.8732 -2.6816 39 1 6.7721 -13.2762 -3.8758 40 1 8.9641 -13.7124 -2.7890 41 1 4.9614 -8.5703 -1.6590 42 1 3.2609 -8.9316 -2.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092207881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:00 Heat of formation + Delta-G solvation = -16.797532 kcal Electronic energy + Delta-G solvation = -24827.288343 eV Core-core repulsion = 20848.942727 eV Total energy + Delta-G solvation = -3978.345615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.37501 -40.93079 -39.83230 -38.81007 -35.25390 -33.85445 -32.89742 -32.43831 -30.15461 -29.36720 -27.21641 -26.18935 -25.47980 -24.28918 -23.63661 -22.42689 -20.52812 -19.69038 -18.69834 -17.92906 -17.83635 -16.71242 -16.46413 -16.41650 -16.29150 -15.87788 -15.74330 -15.35629 -14.83879 -14.81146 -14.45098 -14.04530 -13.94131 -13.87117 -13.58193 -13.32929 -12.98546 -12.94451 -12.71166 -12.53828 -12.45751 -11.78931 -11.33764 -11.22932 -11.07170 -11.03347 -10.78597 -10.70954 -10.67245 -10.17179 -10.09336 -9.82364 -9.40971 -9.08020 -8.89655 -8.28243 -8.24875 -6.51137 -6.22625 -3.93250 0.61066 0.83414 2.31499 3.01899 3.08523 3.21661 3.22867 3.27299 3.31397 3.45922 3.67326 3.95301 4.14211 4.15471 4.19637 4.30516 4.36950 4.37282 4.64479 4.72809 4.93462 4.98261 5.12563 5.17173 5.24761 5.25156 5.30595 5.31986 5.39143 5.51032 5.57469 5.66869 5.71661 5.75402 5.88213 5.91990 6.07428 6.12849 6.44288 6.60521 6.93292 7.45665 7.58669 7.68850 8.34282 8.59824 9.22740 10.84776 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001598 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.865943 B =17514.270555 C =18382.676111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.132 3.868 15 C -0.123 4.123 16 C -0.135 4.135 17 C 0.126 3.874 18 N -0.700 5.700 19 C 0.443 3.557 20 C -0.250 4.250 21 C -0.007 4.007 22 C -0.257 4.257 23 C 0.356 3.644 24 F -0.113 7.113 25 N -0.579 5.579 26 C -0.151 4.151 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.408 0.592 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.075 0.925 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.058 -28.913 -4.979 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.007 3.993 15 C -0.142 4.142 16 C -0.174 4.174 17 C 0.020 3.980 18 N -0.331 5.331 19 C 0.206 3.794 20 C -0.275 4.275 21 C -0.032 4.032 22 C -0.281 4.281 23 C 0.202 3.798 24 F -0.092 7.092 25 N -0.303 5.303 26 C -0.190 4.190 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.094 0.906 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.935 -28.789 -4.240 31.452 hybrid contribution 2.690 1.209 -0.201 2.956 sum 14.626 -27.579 -4.441 31.532 Atomic orbital electron populations 1.70014 1.05949 1.27462 1.46848 1.24991 0.95029 0.99029 0.94527 0.86168 0.79417 0.81564 0.78352 1.20269 1.20735 1.19703 1.22869 0.94913 0.91664 1.58972 0.90934 1.85384 1.04960 0.96336 1.96718 1.23534 1.06557 0.95472 1.04888 1.20311 0.86526 0.86327 0.75131 1.90701 1.15391 1.85643 1.47571 1.45994 1.09886 1.05496 1.77911 1.21261 0.95158 0.80443 1.02391 1.22843 0.98352 0.94790 0.98184 1.23320 0.99082 0.95038 0.99920 1.21938 0.82081 0.97359 0.96625 1.44275 1.13296 1.53458 1.22040 1.17784 0.85659 0.87688 0.88231 1.21511 1.03024 1.06449 0.96467 1.21218 0.91029 0.92291 0.98664 1.21505 1.01045 1.09008 0.96580 1.17654 0.81118 0.92583 0.88431 1.91634 1.41431 1.91914 1.84259 1.66203 1.03069 1.22141 1.38876 1.23637 1.02493 0.95748 0.97072 0.92176 0.89275 0.89263 0.76882 0.91375 0.91513 0.88590 0.87850 0.90323 0.88099 0.75534 0.84017 0.83767 0.83866 0.90636 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 12 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 13 N -0.74 -9.22 5.56 -60.29 -0.33 -9.56 16 14 C 0.13 1.33 5.51 -4.04 -0.02 1.30 16 15 C -0.12 -0.78 3.63 -89.81 -0.33 -1.10 16 16 C -0.13 -0.65 7.39 -25.92 -0.19 -0.84 16 17 C 0.13 0.61 4.11 -67.12 -0.28 0.33 16 18 N -0.70 -4.47 5.43 -53.16 -0.29 -4.76 16 19 C 0.44 3.58 7.65 -155.02 -1.19 2.40 16 20 C -0.25 -1.52 9.28 -39.22 -0.36 -1.89 16 21 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 22 C -0.26 -1.68 10.08 -39.34 -0.40 -2.08 16 23 C 0.36 3.31 8.41 -17.37 -0.15 3.17 16 24 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 25 N -0.58 -5.91 10.40 -12.78 -0.13 -6.04 16 26 C -0.15 -0.85 7.43 -25.92 -0.19 -1.05 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 31 H 0.07 0.73 7.84 -51.93 -0.41 0.33 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.37 6.10 -51.93 -0.32 0.05 16 37 H 0.41 2.61 8.82 -40.82 -0.36 2.25 16 38 H 0.14 0.58 6.03 -52.49 -0.32 0.26 16 39 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.10 0.55 7.90 -51.93 -0.41 0.14 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -35.77 376.20 -10.13 -45.91 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.50 Total: 0.66 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.17 Total: -6.41 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.02 Total: -45.74 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.77 -10.13 -45.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092207881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.108 kcal (2) G-P(sol) polarization free energy of solvation -35.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds