Wall clock time and date at job start Tue Mar 31 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99718 * 2 1 4 4 H 1.48500 * 109.47333 * 270.00063 * 3 2 1 5 5 H 1.48497 * 109.47229 * 30.00244 * 3 2 1 6 6 H 1.48501 * 109.46876 * 150.00114 * 3 2 1 7 7 C 1.38802 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00209 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00122 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47421 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99942 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00156 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47142 * 180.02562 * 14 13 11 16 16 C 1.53774 * 113.61547 * 175.00124 * 15 14 13 17 17 C 1.53780 * 87.08445 * 139.97857 * 16 15 14 18 18 N 1.46492 * 113.61591 * 89.11556 * 17 16 15 19 19 C 1.38996 * 120.00451 * 155.00399 * 18 17 16 20 20 C 1.39069 * 119.68504 * 359.97438 * 19 18 17 21 21 C 1.38380 * 119.15738 * 180.02562 * 20 19 18 22 22 C 1.38757 * 118.53396 * 0.25426 * 21 20 19 23 23 C 1.38374 * 119.30150 * 359.49627 * 22 21 20 24 24 F 1.35104 * 119.59974 * 180.25365 * 23 22 21 25 25 N 1.32135 * 120.79629 * 0.51781 * 23 22 21 26 26 C 1.53780 * 113.60972 * 272.49488 * 15 14 13 27 27 H 0.97004 * 120.00629 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47168 * 60.00201 * 10 9 7 29 29 H 1.09001 * 109.47067 * 300.00207 * 10 9 7 30 30 H 0.97007 * 119.99860 * 0.02562 * 13 11 10 31 31 H 1.08992 * 109.47141 * 60.00136 * 14 13 11 32 32 H 1.09001 * 109.46989 * 299.99986 * 14 13 11 33 33 H 1.08995 * 112.90942 * 43.74158 * 15 14 13 34 34 H 1.09002 * 113.61530 * 25.42618 * 16 15 14 35 35 H 1.09002 * 113.61248 * 254.52914 * 16 15 14 36 36 H 1.09004 * 113.61392 * 219.93645 * 17 16 15 37 37 H 0.97003 * 120.00140 * 335.00073 * 18 17 16 38 38 H 1.08000 * 120.42646 * 0.04480 * 20 19 18 39 39 H 1.08002 * 120.73050 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.34994 * 179.75200 * 22 21 20 41 41 H 1.09011 * 113.61266 * 105.47044 * 26 15 14 42 42 H 1.08994 * 113.61856 * 334.56673 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3430 -0.0003 14 6 2.3306 -7.7150 -0.0003 15 6 3.5027 -8.6985 -0.0001 16 6 3.0724 -10.1697 0.1227 17 6 4.1663 -10.4939 -0.9084 18 7 5.4734 -10.7734 -0.3091 19 6 6.3961 -11.5597 -0.9890 20 6 6.0712 -12.0783 -2.2379 21 6 6.9978 -12.8602 -2.9049 22 6 8.2210 -13.1029 -2.2965 23 6 8.4807 -12.5513 -1.0543 24 9 9.6717 -12.7794 -0.4586 25 7 7.5760 -11.8085 -0.4414 26 6 4.0140 -9.0475 -1.4078 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7312 -0.8905 30 1 3.8011 -6.1834 -0.0006 31 1 1.7217 -7.8750 -0.8900 32 1 1.7223 -7.8752 0.8899 33 1 4.2939 -8.4155 0.6940 34 1 2.0617 -10.3606 -0.2382 35 1 3.2594 -10.5985 1.1072 36 1 3.8674 -11.2439 -1.6408 37 1 5.6952 -10.4096 0.5624 38 1 5.1082 -11.8732 -2.6816 39 1 6.7721 -13.2762 -3.8758 40 1 8.9641 -13.7124 -2.7890 41 1 4.9614 -8.5703 -1.6590 42 1 3.2609 -8.9316 -2.1872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092207881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:59 Heat of formation + Delta-G solvation = -41.512276 kcal Electronic energy + Delta-G solvation = -24828.360054 eV Core-core repulsion = 20848.942727 eV Total energy + Delta-G solvation = -3979.417327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02071 -41.44925 -40.70691 -39.84462 -36.07681 -34.73825 -34.58564 -33.43605 -31.40777 -30.06333 -28.19614 -27.57376 -26.61934 -24.86551 -24.15507 -23.04356 -21.81490 -20.34463 -19.79292 -19.15219 -18.49275 -17.78282 -17.44229 -17.09288 -17.01521 -16.88512 -16.70245 -16.51243 -16.31353 -15.81135 -15.39042 -15.26364 -14.80324 -14.55435 -14.48336 -14.41865 -14.05919 -13.88266 -13.48198 -13.35090 -13.17197 -13.11159 -12.90860 -12.82235 -12.63045 -11.95657 -11.75279 -11.69531 -11.26027 -11.15681 -11.14871 -10.89378 -10.71180 -10.60586 -10.28372 -10.06975 -8.76256 -8.67124 -8.35269 -6.13295 0.08357 0.37303 1.27060 1.41861 1.46935 1.57489 1.62407 1.85063 2.26022 2.32624 2.71836 2.93643 2.98799 3.31376 3.50257 3.61511 3.73039 3.80769 3.86912 3.93725 4.03168 4.23549 4.28358 4.28881 4.35617 4.50529 4.54533 4.69397 4.79874 4.86043 4.87239 4.90074 4.98843 5.10664 5.15646 5.26668 5.30012 5.41240 5.50672 5.61630 5.99138 6.19181 6.43108 6.51640 6.94943 7.06064 7.25833 8.73898 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001598 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.865943 B =17514.270555 C =18382.676111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.712 5.712 14 C 0.130 3.870 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.133 3.867 18 N -0.700 5.700 19 C 0.425 3.575 20 C -0.246 4.246 21 C -0.002 4.002 22 C -0.252 4.252 23 C 0.322 3.678 24 F -0.128 7.128 25 N -0.614 5.614 26 C -0.147 4.147 27 H 0.271 0.729 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.414 0.586 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.405 0.595 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.163 0.837 41 H 0.068 0.932 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.624 -29.927 -6.240 34.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.007 3.993 15 C -0.136 4.136 16 C -0.166 4.166 17 C 0.028 3.972 18 N -0.331 5.331 19 C 0.188 3.812 20 C -0.271 4.271 21 C -0.028 4.028 22 C -0.276 4.276 23 C 0.169 3.831 24 F -0.107 7.107 25 N -0.339 5.339 26 C -0.186 4.186 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.241 0.759 38 H 0.183 0.817 39 H 0.198 0.802 40 H 0.181 0.819 41 H 0.087 0.913 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.560 -29.846 -5.504 33.241 hybrid contribution 2.229 1.390 0.177 2.633 sum 15.789 -28.457 -5.327 32.976 Atomic orbital electron populations 1.70176 1.07937 1.28621 1.47945 1.26118 0.95972 1.03286 0.93732 0.84960 0.78179 0.76069 0.78812 1.19266 1.20256 1.18303 1.23207 0.95334 0.92081 1.58933 0.89994 1.85544 1.10574 0.99189 1.97046 1.23387 1.03533 0.94675 1.06644 1.20036 0.86267 0.86704 0.75209 1.90688 1.17416 1.86137 1.50334 1.45784 1.10122 1.05365 1.75271 1.21455 0.96698 0.79427 1.01752 1.22822 0.97000 0.94649 0.99174 1.23312 0.99634 0.93349 1.00277 1.21950 0.81292 0.97275 0.96720 1.44360 1.13556 1.53215 1.21936 1.18119 0.85417 0.88402 0.89230 1.21857 1.04101 1.05580 0.95557 1.21686 0.89962 0.91360 0.99743 1.21805 1.02114 1.08268 0.95407 1.18047 0.81055 0.94202 0.89759 1.91588 1.42216 1.92198 1.84692 1.66096 1.04223 1.23311 1.40304 1.23622 1.02148 0.96279 0.96501 0.91968 0.87463 0.87308 0.74937 0.91709 0.92553 0.88139 0.86887 0.90080 0.86237 0.75871 0.81684 0.80154 0.81915 0.91341 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.13 7.85 87.66 0.69 19.82 16 12 O -0.57 -25.83 15.86 -3.03 -0.05 -25.88 16 13 N -0.71 -16.65 5.56 -463.06 -2.57 -19.23 16 14 C 0.13 2.44 5.51 86.38 0.48 2.91 16 15 C -0.12 -1.24 3.63 -10.27 -0.04 -1.28 16 16 C -0.13 -0.92 7.39 31.12 0.23 -0.69 16 17 C 0.13 0.92 4.11 45.52 0.19 1.11 16 18 N -0.70 -7.80 5.43 -322.09 -1.75 -9.55 16 19 C 0.42 6.30 7.65 133.04 1.02 7.31 16 20 C -0.25 -2.32 9.28 22.50 0.21 -2.11 16 21 C 0.00 -0.02 10.16 22.43 0.23 0.21 16 22 C -0.25 -2.87 10.08 22.43 0.23 -2.65 16 23 C 0.32 5.98 8.41 84.68 0.71 6.69 16 24 F -0.13 -2.63 17.29 44.97 0.78 -1.85 16 25 N -0.61 -12.50 10.40 -194.33 -2.02 -14.53 16 26 C -0.15 -1.30 7.43 31.12 0.23 -1.06 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.41 7.11 8.47 -92.70 -0.79 6.33 16 31 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 0.66 8.10 -2.39 -0.02 0.64 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.12 0.43 6.10 -2.38 -0.01 0.42 16 37 H 0.41 4.77 8.82 -92.71 -0.82 3.96 16 38 H 0.17 0.68 6.03 -2.91 -0.02 0.66 16 39 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.10 0.86 7.90 -2.39 -0.02 0.84 16 Total: -1.00 -81.36 376.20 0.72 -80.63 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.53 Total: 13.74 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.72 Total: -3.85 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -6.06 Total: -98.87 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -81.36 0.72 -80.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092207881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.121 kcal (2) G-P(sol) polarization free energy of solvation -81.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds