Wall clock time and date at job start Tue Mar 31 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47001 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47615 * 118.74021 * 179.73540 * 13 11 10 15 15 C 1.54173 * 111.08882 * 138.20426 * 14 13 11 16 16 C 1.51273 * 109.77621 * 320.23728 * 15 14 13 17 17 N 1.46200 * 109.10217 * 92.31294 * 16 15 14 18 18 C 1.38990 * 111.00083 * 144.77193 * 17 16 15 19 19 C 1.39076 * 119.68644 * 186.80636 * 18 17 16 20 20 C 1.38380 * 119.15382 * 179.75455 * 19 18 17 21 21 C 1.38761 * 118.53596 * 0.50782 * 20 19 18 22 22 C 1.38371 * 119.30542 * 359.75355 * 21 20 19 23 23 F 1.35100 * 119.60765 * 179.97438 * 22 21 20 24 24 N 1.32144 * 120.79308 * 359.97438 * 22 21 20 25 25 C 1.41449 * 116.34346 * 272.97459 * 17 16 15 26 26 C 1.44877 * 118.74830 * 0.02562 * 13 11 10 27 27 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 29 29 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 30 30 H 1.08996 * 109.10869 * 258.78403 * 14 13 11 31 31 H 1.08992 * 109.11860 * 17.85057 * 14 13 11 32 32 H 1.09003 * 109.45236 * 200.09318 * 15 14 13 33 33 H 1.08999 * 109.26739 * 80.26649 * 15 14 13 34 34 H 1.08998 * 109.53155 * 332.42508 * 16 15 14 35 35 H 1.09003 * 109.53046 * 212.19133 * 16 15 14 36 36 H 1.07992 * 120.42332 * 0.02562 * 19 18 17 37 37 H 1.07993 * 120.73460 * 180.24561 * 20 19 18 38 38 H 1.08002 * 120.34946 * 179.72940 * 21 20 19 39 39 H 1.08999 * 109.38381 * 303.32795 * 25 17 16 40 40 H 1.08996 * 109.30160 * 183.58398 * 25 17 16 41 41 H 1.09001 * 109.43504 * 29.79093 * 26 13 11 42 42 H 1.08998 * 109.43770 * 149.70291 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0029 13 7 2.8438 -6.3432 0.0039 14 6 2.2959 -7.7139 0.0105 15 6 3.0822 -8.6303 -0.9481 16 6 3.4279 -7.8733 -2.2114 17 7 4.7473 -7.2628 -2.0575 18 6 5.4399 -7.2628 -3.2626 19 6 6.7689 -6.8542 -3.2932 20 6 7.4494 -6.8635 -4.4981 21 6 6.7727 -7.2724 -5.6384 22 6 5.4485 -7.6610 -5.5374 23 9 4.7837 -8.0598 -6.6439 24 7 4.8264 -7.6469 -4.3717 25 6 4.7807 -5.9841 -1.4537 26 6 4.2673 -6.0737 0.0041 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7307 0.8928 29 1 3.1243 -3.7322 -0.8872 30 1 2.3532 -8.1162 1.0218 31 1 1.2520 -7.6826 -0.3015 32 1 2.4740 -9.4989 -1.2005 33 1 3.9995 -8.9592 -0.4597 34 1 2.6844 -7.0955 -2.3851 35 1 3.4413 -8.5616 -3.0565 36 1 7.2648 -6.5379 -2.3875 37 1 8.4830 -6.5552 -4.5505 38 1 7.2742 -7.2868 -6.5949 39 1 4.1472 -5.3005 -2.0190 40 1 5.8052 -5.6120 -1.4541 41 1 4.4576 -5.1297 0.5148 42 1 4.7887 -6.8781 0.5229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095164298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:57 Heat of formation + Delta-G solvation = -9.454635 kcal Electronic energy + Delta-G solvation = -27001.601902 eV Core-core repulsion = 23023.574698 eV Total energy + Delta-G solvation = -3978.027203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26282 -41.28704 -39.80465 -37.88161 -35.16125 -33.55441 -32.83604 -32.45199 -30.52714 -29.35753 -27.89307 -26.30050 -25.47939 -23.82284 -23.62140 -22.15806 -20.94308 -19.15263 -18.48176 -17.75293 -17.58816 -16.84390 -16.59563 -16.38859 -16.08670 -15.88827 -15.49731 -15.41152 -14.82728 -14.41438 -14.23672 -14.00722 -13.85464 -13.52543 -13.41075 -13.10534 -12.78515 -12.65115 -12.57489 -12.39894 -12.02701 -11.85762 -11.79124 -11.11710 -11.06478 -11.04592 -10.96672 -10.76633 -10.48591 -10.03244 -9.86737 -9.82439 -9.38274 -9.08884 -8.59044 -8.39013 -8.24791 -6.52812 -6.23763 -3.94687 0.61837 0.79837 2.86662 2.89134 3.01386 3.20336 3.23594 3.26316 3.28287 3.51111 3.56480 4.17012 4.17922 4.48418 4.58413 4.63549 4.70170 4.79527 4.84751 4.91099 4.97244 5.11002 5.13696 5.22581 5.33741 5.37544 5.41843 5.46950 5.57485 5.60255 5.71142 5.73213 5.81879 5.84811 5.89492 6.02015 6.07187 6.20223 6.50067 6.70402 6.80986 7.40893 7.48915 7.56960 8.32524 8.51155 9.21406 10.83642 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.003066 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.364130 B = 9131.315952 C =10457.640341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.528 3.472 12 O -0.513 6.513 13 N -0.618 5.618 14 C 0.112 3.888 15 C -0.130 4.130 16 C 0.067 3.933 17 N -0.487 5.487 18 C 0.361 3.639 19 C -0.201 4.201 20 C -0.024 4.024 21 C -0.229 4.229 22 C 0.336 3.664 23 F -0.113 7.113 24 N -0.554 5.554 25 C 0.046 3.954 26 C 0.116 3.884 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.820 -17.712 -5.824 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.387 6.387 13 N -0.354 5.354 14 C -0.011 4.011 15 C -0.168 4.168 16 C -0.059 4.059 17 N -0.203 5.203 18 C 0.129 3.871 19 C -0.224 4.224 20 C -0.050 4.050 21 C -0.251 4.251 22 C 0.182 3.818 23 F -0.092 7.092 24 N -0.274 5.274 25 C -0.082 4.082 26 C -0.009 4.009 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.134 -18.438 -5.428 24.463 hybrid contribution 2.363 1.812 -0.772 3.077 sum 17.497 -16.626 -6.200 24.920 Atomic orbital electron populations 1.70017 1.05965 1.27474 1.46746 1.24990 0.95018 0.99021 0.94516 0.86177 0.79425 0.81602 0.78352 1.20284 1.20724 1.19664 1.22845 0.94841 0.91616 1.59074 0.90968 1.85439 1.04954 0.96364 1.96680 1.23601 1.06512 0.95520 1.04549 1.20456 0.86444 0.86428 0.75086 1.90692 1.15277 1.85300 1.47446 1.47849 1.06057 1.06080 1.75421 1.21895 0.99271 0.80764 0.99136 1.21942 1.01078 0.98140 0.95683 1.21672 0.86252 0.99171 0.98812 1.55787 1.21056 1.25123 1.18334 1.19373 0.90680 0.90638 0.86438 1.21624 0.93963 1.06834 0.99981 1.21328 1.00096 0.92695 0.90848 1.21668 0.93976 1.07846 1.01625 1.17881 0.87571 0.94385 0.81942 1.91637 1.81557 1.87638 1.48373 1.66817 1.39727 1.22919 0.97979 1.22155 1.02821 0.86722 0.96467 1.21635 0.81238 1.03413 0.94580 0.92161 0.89167 0.89512 0.91892 0.89121 0.89927 0.90442 0.92285 0.88364 0.83585 0.83494 0.83648 0.93136 0.88592 0.88628 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.00 4.64 36.01 0.17 -2.83 16 11 C 0.53 9.84 7.65 -10.98 -0.08 9.75 16 12 O -0.51 -11.64 15.16 5.56 0.08 -11.55 16 13 N -0.62 -8.41 2.17 -172.20 -0.37 -8.78 16 14 C 0.11 1.32 6.18 -2.82 -0.02 1.30 16 15 C -0.13 -1.24 5.79 -26.99 -0.16 -1.40 16 16 C 0.07 0.77 4.93 -5.08 -0.03 0.75 16 17 N -0.49 -5.08 3.87 -177.78 -0.69 -5.77 16 18 C 0.36 3.89 6.35 -155.02 -0.98 2.91 16 19 C -0.20 -1.61 9.08 -39.22 -0.36 -1.96 16 20 C -0.02 -0.16 10.16 -39.34 -0.40 -0.56 16 21 C -0.23 -1.84 10.08 -39.34 -0.40 -2.24 16 22 C 0.34 3.76 8.41 -17.37 -0.15 3.62 16 23 F -0.11 -1.33 17.29 2.25 0.04 -1.29 16 24 N -0.55 -6.94 8.20 -12.77 -0.10 -7.05 16 25 C 0.05 0.47 5.17 -5.71 -0.03 0.44 16 26 C 0.12 1.18 5.30 -3.95 -0.02 1.16 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.63 7.31 -51.92 -0.38 1.25 16 29 H 0.09 1.60 7.21 -51.92 -0.37 1.23 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.27 6.99 -51.93 -0.36 0.91 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.68 7.98 -51.93 -0.41 0.26 16 34 H 0.06 0.85 7.33 -51.93 -0.38 0.47 16 35 H 0.10 1.20 6.51 -51.93 -0.34 0.86 16 36 H 0.15 0.84 7.10 -52.49 -0.37 0.47 16 37 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.05 0.65 7.34 -51.93 -0.38 0.27 16 40 H 0.10 0.73 6.34 -51.93 -0.33 0.40 16 41 H 0.10 0.94 6.24 -51.93 -0.32 0.62 16 42 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -35.07 357.06 -9.73 -44.80 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.31 Total: -0.88 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.25 Total: -1.84 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.43 Total: -46.92 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.07 -9.73 -44.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095164298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.344 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds