Wall clock time and date at job start Tue Mar 31 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47001 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.47615 * 118.74021 * 179.73540 * 13 11 10 15 15 C 1.54173 * 111.08882 * 138.20426 * 14 13 11 16 16 C 1.51273 * 109.77621 * 320.23728 * 15 14 13 17 17 N 1.46200 * 109.10217 * 92.31294 * 16 15 14 18 18 C 1.38990 * 111.00083 * 144.77193 * 17 16 15 19 19 C 1.39076 * 119.68644 * 186.80636 * 18 17 16 20 20 C 1.38380 * 119.15382 * 179.75455 * 19 18 17 21 21 C 1.38761 * 118.53596 * 0.50782 * 20 19 18 22 22 C 1.38371 * 119.30542 * 359.75355 * 21 20 19 23 23 F 1.35100 * 119.60765 * 179.97438 * 22 21 20 24 24 N 1.32144 * 120.79308 * 359.97438 * 22 21 20 25 25 C 1.41449 * 116.34346 * 272.97459 * 17 16 15 26 26 C 1.44877 * 118.74830 * 0.02562 * 13 11 10 27 27 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 29 29 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 30 30 H 1.08996 * 109.10869 * 258.78403 * 14 13 11 31 31 H 1.08992 * 109.11860 * 17.85057 * 14 13 11 32 32 H 1.09003 * 109.45236 * 200.09318 * 15 14 13 33 33 H 1.08999 * 109.26739 * 80.26649 * 15 14 13 34 34 H 1.08998 * 109.53155 * 332.42508 * 16 15 14 35 35 H 1.09003 * 109.53046 * 212.19133 * 16 15 14 36 36 H 1.07992 * 120.42332 * 0.02562 * 19 18 17 37 37 H 1.07993 * 120.73460 * 180.24561 * 20 19 18 38 38 H 1.08002 * 120.34946 * 179.72940 * 21 20 19 39 39 H 1.08999 * 109.38381 * 303.32795 * 25 17 16 40 40 H 1.08996 * 109.30160 * 183.58398 * 25 17 16 41 41 H 1.09001 * 109.43504 * 29.79093 * 26 13 11 42 42 H 1.08998 * 109.43770 * 149.70291 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9871 -5.3028 0.0036 12 8 0.7908 -5.5023 0.0029 13 7 2.8438 -6.3432 0.0039 14 6 2.2959 -7.7139 0.0105 15 6 3.0822 -8.6303 -0.9481 16 6 3.4279 -7.8733 -2.2114 17 7 4.7473 -7.2628 -2.0575 18 6 5.4399 -7.2628 -3.2626 19 6 6.7689 -6.8542 -3.2932 20 6 7.4494 -6.8635 -4.4981 21 6 6.7727 -7.2724 -5.6384 22 6 5.4485 -7.6610 -5.5374 23 9 4.7837 -8.0598 -6.6439 24 7 4.8264 -7.6469 -4.3717 25 6 4.7807 -5.9841 -1.4537 26 6 4.2673 -6.0737 0.0041 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7307 0.8928 29 1 3.1243 -3.7322 -0.8872 30 1 2.3532 -8.1162 1.0218 31 1 1.2520 -7.6826 -0.3015 32 1 2.4740 -9.4989 -1.2005 33 1 3.9995 -8.9592 -0.4597 34 1 2.6844 -7.0955 -2.3851 35 1 3.4413 -8.5616 -3.0565 36 1 7.2648 -6.5379 -2.3875 37 1 8.4830 -6.5552 -4.5505 38 1 7.2742 -7.2868 -6.5949 39 1 4.1472 -5.3005 -2.0190 40 1 5.8052 -5.6120 -1.4541 41 1 4.4576 -5.1297 0.5148 42 1 4.7887 -6.8781 0.5229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095164298.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:56 Heat of formation + Delta-G solvation = -32.085287 kcal Electronic energy + Delta-G solvation = -27002.583240 eV Core-core repulsion = 23023.574698 eV Total energy + Delta-G solvation = -3979.008542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.07457 -42.11449 -40.94192 -38.92456 -36.27594 -34.59244 -34.45680 -33.58485 -31.29231 -30.83239 -28.79869 -27.73275 -27.16512 -24.65104 -24.34410 -23.12586 -21.84821 -20.42189 -19.65156 -19.20997 -18.46665 -18.07599 -17.51240 -17.17458 -17.08437 -16.88562 -16.81559 -16.57609 -16.32129 -15.93343 -15.45250 -15.09004 -14.81324 -14.62417 -14.50364 -14.15931 -13.93653 -13.74718 -13.53504 -13.41058 -13.18274 -13.15226 -12.90545 -12.76135 -12.66791 -12.55821 -12.00331 -11.91021 -11.69827 -11.16086 -11.14776 -10.90445 -10.77519 -10.63625 -10.27450 -9.74182 -9.15892 -8.69134 -8.35161 -6.14085 -0.07457 0.16758 1.24607 1.42352 1.45387 1.52793 1.56312 2.08475 2.16030 2.26705 2.57521 2.75853 2.99278 3.23750 3.52001 3.61723 3.81075 3.84359 3.94480 3.98696 4.09041 4.13001 4.14806 4.24685 4.28997 4.42747 4.43866 4.51379 4.61516 4.71312 4.72780 4.85294 4.90806 4.95029 5.03283 5.13956 5.17112 5.40857 5.48520 5.52320 5.78811 6.03647 6.18895 6.25267 6.68071 7.05905 7.11262 8.74177 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.003066 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.364130 B = 9131.315952 C =10457.640341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.158 6.158 10 C -0.122 4.122 11 C 0.525 3.475 12 O -0.566 6.566 13 N -0.602 5.602 14 C 0.110 3.890 15 C -0.114 4.114 16 C 0.073 3.927 17 N -0.478 5.478 18 C 0.331 3.669 19 C -0.190 4.190 20 C -0.015 4.015 21 C -0.216 4.216 22 C 0.299 3.701 23 F -0.129 7.129 24 N -0.591 5.591 25 C 0.049 3.951 26 C 0.109 3.891 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.019 0.981 35 H 0.087 0.913 36 H 0.177 0.823 37 H 0.191 0.809 38 H 0.171 0.829 39 H 0.014 0.986 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.764 -17.799 -5.227 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.273 4.273 11 C 0.313 3.687 12 O -0.445 6.445 13 N -0.336 5.336 14 C -0.012 4.012 15 C -0.152 4.152 16 C -0.054 4.054 17 N -0.194 5.194 18 C 0.100 3.900 19 C -0.213 4.213 20 C -0.041 4.041 21 C -0.238 4.238 22 C 0.146 3.854 23 F -0.108 7.108 24 N -0.312 5.312 25 C -0.078 4.078 26 C -0.014 4.014 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.194 0.806 37 H 0.208 0.792 38 H 0.188 0.812 39 H 0.033 0.967 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 20.142 -18.570 -4.846 27.822 hybrid contribution 0.928 1.704 -1.032 2.197 sum 21.069 -16.867 -5.879 27.622 Atomic orbital electron populations 1.70196 1.08093 1.28592 1.48045 1.26156 0.95947 1.03408 0.93714 0.84944 0.78362 0.75887 0.78742 1.19475 1.20405 1.17721 1.23186 0.95356 0.91718 1.58843 0.89666 1.85668 1.10875 0.99551 1.97021 1.23404 1.03306 0.94288 1.06292 1.20315 0.86227 0.87017 0.75166 1.90674 1.17509 1.85899 1.50401 1.47865 1.07123 1.05566 1.73025 1.22047 0.98125 0.80081 1.00941 1.21867 1.01809 0.97510 0.94048 1.21512 0.86307 0.98024 0.99560 1.55959 1.19827 1.24999 1.18621 1.19731 0.92000 0.92223 0.86004 1.22021 0.92571 1.04920 1.01762 1.21868 1.01705 0.90980 0.89521 1.22043 0.92458 1.05773 1.03516 1.18308 0.89011 0.96637 0.81470 1.91590 1.82106 1.88135 1.48954 1.66653 1.41483 1.23979 0.99091 1.22184 1.04016 0.86098 0.95531 1.21998 0.78905 1.05276 0.95227 0.92045 0.86732 0.88048 0.89604 0.92063 0.88509 0.88229 0.96263 0.89434 0.80583 0.79183 0.81185 0.96723 0.85069 0.87727 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.11 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.54 -30.83 9.50 67.96 0.65 -30.19 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 10 C -0.12 -4.85 4.64 71.24 0.33 -4.52 16 11 C 0.53 20.00 7.65 87.66 0.67 20.67 16 12 O -0.57 -27.17 15.16 -3.03 -0.05 -27.22 16 13 N -0.60 -15.90 2.17 -817.09 -1.78 -17.67 16 14 C 0.11 2.53 6.18 86.56 0.54 3.06 16 15 C -0.11 -2.02 5.79 30.43 0.18 -1.84 16 16 C 0.07 1.70 4.93 85.87 0.42 2.12 16 17 N -0.48 -9.17 3.87 -716.37 -2.77 -11.95 16 18 C 0.33 6.65 6.35 133.04 0.84 7.49 16 19 C -0.19 -2.31 9.08 22.50 0.20 -2.10 16 20 C -0.02 -0.14 10.16 22.43 0.23 0.09 16 21 C -0.22 -2.94 10.08 22.43 0.23 -2.71 16 22 C 0.30 6.66 8.41 84.68 0.71 7.37 16 23 F -0.13 -3.17 17.29 44.97 0.78 -2.39 16 24 N -0.59 -14.99 8.20 -194.33 -1.59 -16.59 16 25 C 0.05 0.88 5.17 87.92 0.45 1.34 16 26 C 0.11 1.90 5.30 87.30 0.46 2.36 16 27 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 28 H 0.11 3.97 7.31 -2.39 -0.02 3.95 16 29 H 0.10 3.72 7.21 -2.39 -0.02 3.70 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.80 6.99 -2.39 -0.02 1.79 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.39 7.98 -2.39 -0.02 1.37 16 34 H 0.02 0.59 7.33 -2.39 -0.02 0.57 16 35 H 0.09 2.24 6.51 -2.39 -0.02 2.22 16 36 H 0.18 1.01 7.10 -2.91 -0.02 0.99 16 37 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.01 0.37 7.34 -2.39 -0.02 0.35 16 40 H 0.13 1.42 6.34 -2.39 -0.02 1.40 16 41 H 0.10 1.69 6.24 -2.39 -0.01 1.67 16 42 H 0.12 1.41 8.11 -2.39 -0.02 1.39 16 Total: -1.00 -83.56 357.06 3.17 -80.39 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.05 Total: 12.06 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.38 Total: 4.31 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -5.86 Total: -102.31 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.05 Total: -27.22 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -83.56 3.17 -80.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095164298.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.309 kcal (2) G-P(sol) polarization free energy of solvation -83.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds