Wall clock time and date at job start Tue Mar 31 2020 22:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99885 * 2 1 4 4 H 1.48504 * 109.46893 * 269.99662 * 3 2 1 5 5 H 1.48498 * 109.47208 * 29.99888 * 3 2 1 6 6 H 1.48501 * 109.46828 * 149.99832 * 3 2 1 7 7 C 1.38803 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00343 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00070 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47547 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99658 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00452 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63302 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 N 1.46497 * 109.46029 * 181.37638 * 16 15 14 18 18 C 1.38996 * 120.00459 * 154.99868 * 17 16 15 19 19 C 1.39070 * 119.68697 * 359.97438 * 18 17 16 20 20 C 1.38378 * 119.15847 * 179.97438 * 19 18 17 21 21 C 1.38759 * 118.53307 * 0.02562 * 20 19 18 22 22 C 1.38368 * 119.30797 * 359.97438 * 21 20 19 23 23 F 1.35094 * 119.60593 * 180.02562 * 22 21 20 24 24 N 1.32146 * 120.79039 * 359.75394 * 22 21 20 25 25 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 26 26 C 1.47207 * 120.81153 * 0.14103 * 13 11 10 27 27 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47309 * 59.99490 * 10 9 7 29 29 H 1.09003 * 109.47333 * 299.99603 * 10 9 7 30 30 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 31 31 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 32 32 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 33 33 H 1.09000 * 109.49553 * 185.30642 * 15 14 13 34 34 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 35 35 H 0.97006 * 120.00139 * 334.99563 * 17 16 15 36 36 H 1.08003 * 120.42193 * 359.96000 * 19 18 17 37 37 H 1.07999 * 120.73310 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.34494 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.49557 * 58.58503 * 25 16 15 40 40 H 1.09001 * 109.50153 * 178.64977 * 25 16 15 41 41 H 1.08996 * 109.53610 * 6.53712 * 26 13 11 42 42 H 1.09002 * 109.68003 * 246.23180 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0030 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0037 14 6 2.3440 -7.7247 0.0040 15 6 2.9820 -8.4829 1.1723 16 6 4.5052 -8.3689 1.0781 17 7 5.1197 -9.1203 2.1753 18 6 6.4142 -9.6091 2.0437 19 6 7.1201 -9.3815 0.8673 20 6 8.4083 -9.8726 0.7482 21 6 8.9497 -10.5782 1.8133 22 6 8.1917 -10.7683 2.9551 23 9 8.7131 -11.4538 3.9959 24 7 6.9657 -10.2827 3.0418 25 6 4.9155 -6.8977 1.1755 26 6 4.2994 -6.1215 0.0068 27 1 -0.4850 0.8400 -0.0004 28 1 3.1238 -3.7309 0.8924 29 1 3.1251 -3.7318 -0.8875 30 1 2.6100 -8.2098 -0.9352 31 1 1.2602 -7.7209 0.1192 32 1 2.6426 -8.0521 2.1143 33 1 2.6917 -9.5325 1.1266 34 1 4.8417 -8.7774 0.1252 35 1 4.6231 -9.2768 2.9938 36 1 6.6685 -8.8287 0.0568 37 1 8.9796 -9.7103 -0.1538 38 1 9.9524 -10.9748 1.7516 39 1 4.5578 -6.4820 2.1175 40 1 6.0018 -6.8193 1.1325 41 1 4.5058 -5.0579 0.1251 42 1 4.7264 -6.4744 -0.9320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095214804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:06 Heat of formation + Delta-G solvation = -33.410471 kcal Electronic energy + Delta-G solvation = -25930.886819 eV Core-core repulsion = 21951.820812 eV Total energy + Delta-G solvation = -3979.066006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.31561 -40.77186 -39.89797 -37.86235 -35.42772 -33.11068 -32.46257 -32.20714 -31.31991 -29.63835 -28.69353 -25.57709 -25.10514 -24.06150 -23.42187 -22.83415 -21.17588 -19.33115 -18.49235 -18.01097 -17.70985 -16.83973 -16.49266 -16.39000 -15.96388 -15.71393 -15.52362 -15.40543 -14.83634 -14.73402 -14.28249 -13.99387 -13.92978 -13.79213 -13.54043 -13.32190 -13.02373 -12.80314 -12.74566 -12.47342 -12.07331 -11.85495 -11.61601 -11.53543 -11.09293 -11.05506 -11.00868 -10.78841 -10.64949 -10.10539 -10.03116 -9.83931 -9.44079 -9.09953 -8.68445 -8.27382 -8.19604 -6.54301 -6.24961 -3.95995 0.68835 0.91727 2.41420 2.83300 2.97900 3.19809 3.22674 3.27659 3.32063 3.52498 3.54669 4.16466 4.18219 4.27499 4.38593 4.46280 4.60303 4.69493 4.73115 4.81747 4.87120 4.97542 5.10264 5.12650 5.26168 5.30509 5.32935 5.42834 5.47491 5.48468 5.56045 5.70541 5.76504 5.79691 5.81186 5.90060 6.05555 6.11470 6.50007 6.51159 7.02783 7.43530 7.54180 7.56163 8.31625 8.46903 9.20369 10.82411 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002059 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.942920 B =13597.720433 C =14497.540615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.515 6.515 13 N -0.623 5.623 14 C 0.117 3.883 15 C -0.141 4.141 16 C 0.155 3.845 17 N -0.714 5.714 18 C 0.443 3.557 19 C -0.251 4.251 20 C -0.006 4.006 21 C -0.259 4.259 22 C 0.356 3.644 23 F -0.114 7.114 24 N -0.580 5.580 25 C -0.152 4.152 26 C 0.111 3.889 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.407 0.593 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.218 -21.788 0.324 27.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.325 3.675 12 O -0.389 6.389 13 N -0.360 5.360 14 C -0.006 4.006 15 C -0.180 4.180 16 C 0.050 3.950 17 N -0.344 5.344 18 C 0.206 3.794 19 C -0.276 4.276 20 C -0.031 4.031 21 C -0.283 4.283 22 C 0.202 3.798 23 F -0.093 7.093 24 N -0.304 5.304 25 C -0.192 4.192 26 C -0.013 4.013 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.243 0.757 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.727 -22.020 0.951 26.508 hybrid contribution 2.479 1.177 -0.013 2.744 sum 17.205 -20.843 0.937 27.043 Atomic orbital electron populations 1.70014 1.05952 1.27493 1.46758 1.24996 0.95036 0.99047 0.94513 0.86169 0.79411 0.81562 0.78365 1.20246 1.20739 1.19696 1.22847 0.94859 0.91592 1.59064 0.90942 1.85418 1.04921 0.96391 1.96704 1.23556 1.06549 0.95361 1.04708 1.20343 0.86173 0.86204 0.74803 1.90699 1.15171 1.85188 1.47823 1.48208 1.06289 1.05725 1.75741 1.21433 1.01099 0.81167 0.96917 1.22207 0.93258 1.01642 1.00862 1.21081 0.93060 0.90978 0.89862 1.44767 1.11663 1.58073 1.19899 1.17829 0.85949 0.87735 0.87899 1.21506 0.96851 1.10064 0.99217 1.21211 0.93640 0.90862 0.97422 1.21485 1.02982 1.09349 0.94518 1.17662 0.87991 0.90429 0.83752 1.91624 1.84644 1.75980 1.57087 1.66230 1.13157 1.18264 1.32729 1.22480 1.01452 0.94956 1.00320 1.21725 0.79930 1.01845 0.97767 0.92155 0.89271 0.89212 0.91452 0.88195 0.90481 0.89918 0.89492 0.75673 0.84078 0.83797 0.83945 0.90516 0.90180 0.88706 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.92 4.51 36.01 0.16 -2.76 16 11 C 0.54 9.54 7.72 -10.99 -0.08 9.45 16 12 O -0.51 -11.20 15.27 5.55 0.08 -11.12 16 13 N -0.62 -7.68 2.98 -172.52 -0.51 -8.20 16 14 C 0.12 1.17 6.42 -3.71 -0.02 1.14 16 15 C -0.14 -1.06 5.55 -26.61 -0.15 -1.20 16 16 C 0.16 1.05 2.10 -67.89 -0.14 0.90 16 17 N -0.71 -5.49 5.24 -53.90 -0.28 -5.77 16 18 C 0.44 3.99 7.63 -155.01 -1.18 2.80 16 19 C -0.25 -1.75 8.82 -39.22 -0.35 -2.09 16 20 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 21 C -0.26 -1.87 10.08 -39.34 -0.40 -2.27 16 22 C 0.36 3.55 8.41 -17.37 -0.15 3.41 16 23 F -0.11 -1.19 17.29 2.25 0.04 -1.16 16 24 N -0.58 -6.37 10.40 -12.78 -0.13 -6.50 16 25 C -0.15 -1.15 5.57 -26.59 -0.15 -1.30 16 26 C 0.11 1.00 6.35 -3.54 -0.02 0.97 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.60 7.70 -51.92 -0.40 1.20 16 29 H 0.09 1.59 7.95 -51.91 -0.41 1.18 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.21 7.00 -51.93 -0.36 0.84 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.50 6.45 -51.93 -0.33 0.16 16 35 H 0.41 3.14 8.73 -40.82 -0.36 2.78 16 36 H 0.14 0.73 6.09 -52.48 -0.32 0.41 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.54 7.67 -51.93 -0.40 0.14 16 41 H 0.09 0.92 5.97 -51.93 -0.31 0.61 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -34.71 364.67 -9.89 -44.60 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.40 Total: -0.44 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.68 Total: -4.06 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.20 Total: -45.55 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.71 -9.89 -44.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095214804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.194 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds