Wall clock time and date at job start Tue Mar 31 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46717 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47005 * 299.99942 * 3 2 1 6 6 H 1.48493 * 109.47276 * 60.00139 * 3 2 1 7 7 C 1.38794 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63302 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 18 18 H 1.09002 * 109.49557 * 58.58503 * 17 16 15 19 19 N 1.46494 * 109.49999 * 178.65231 * 17 16 15 20 20 C 1.39001 * 120.00111 * 204.99820 * 19 17 16 21 21 C 1.39066 * 119.68560 * 359.72757 * 20 19 17 22 22 C 1.38379 * 119.15705 * 179.79148 * 21 20 19 23 23 C 1.38766 * 118.53220 * 0.47281 * 22 21 20 24 24 C 1.38369 * 119.30109 * 359.74582 * 23 22 21 25 25 F 1.35104 * 119.60017 * 179.97438 * 24 23 22 26 26 N 1.32131 * 120.79864 * 0.02715 * 24 23 22 27 27 C 1.47207 * 120.81153 * 180.13388 * 13 11 10 28 28 H 0.96993 * 119.99621 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47030 * 59.99687 * 10 9 7 30 30 H 1.09003 * 109.46809 * 300.00106 * 10 9 7 31 31 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 32 32 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 33 33 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 34 34 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 35 35 H 1.09003 * 109.46332 * 181.39145 * 16 15 14 36 36 H 1.09005 * 109.46002 * 301.35718 * 16 15 14 37 37 H 0.97005 * 120.00498 * 24.99773 * 19 17 16 38 38 H 1.08002 * 120.42518 * 0.02562 * 21 20 19 39 39 H 1.08001 * 120.73727 * 180.21949 * 22 21 20 40 40 H 1.07995 * 120.34662 * 179.72651 * 23 22 21 41 41 H 1.08996 * 109.53610 * 6.53712 * 27 13 11 42 42 H 1.08997 * 109.56315 * 246.16158 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.2959 -6.1173 -0.0003 15 6 4.9184 -6.8896 -1.1677 16 6 4.5143 -8.3626 -1.0729 17 6 2.9918 -8.4831 -1.1713 18 1 2.6530 -8.0528 -2.1137 19 7 2.6083 -9.8957 -1.1128 20 6 1.4113 -10.3150 -1.6814 21 6 0.5799 -9.3870 -2.2992 22 6 -0.6072 -9.8172 -2.8655 23 6 -0.9294 -11.1645 -2.7862 24 6 -0.0583 -12.0330 -2.1525 25 9 -0.3663 -13.3460 -2.0714 26 7 1.0706 -11.5937 -1.6250 27 6 2.3475 -7.7289 -0.0043 28 1 -0.4849 0.8400 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 4.7204 -6.4708 0.9394 32 1 4.5002 -5.0530 -0.1159 33 1 4.5614 -6.4743 -2.1102 34 1 6.0042 -6.8065 -1.1211 35 1 4.9761 -8.9191 -1.8886 36 1 4.8499 -8.7706 -0.1194 37 1 3.1897 -10.5386 -0.6772 38 1 0.8590 -8.3445 -2.3398 39 1 -1.2702 -9.1190 -3.3547 40 1 -1.8506 -11.5313 -3.2142 41 1 1.2641 -7.7275 -0.1240 42 1 2.6128 -8.2141 0.9350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095287256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:32 Heat of formation + Delta-G solvation = -33.141857 kcal Electronic energy + Delta-G solvation = -26293.638335 eV Core-core repulsion = 22314.583977 eV Total energy + Delta-G solvation = -3979.054358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18951 -40.69239 -39.83548 -37.74549 -35.50041 -32.97634 -32.52930 -32.45828 -30.99965 -29.59272 -28.27612 -25.65881 -25.25680 -23.97971 -23.73132 -22.38432 -21.12154 -19.23916 -18.36053 -17.92194 -17.67896 -16.84425 -16.37868 -16.26133 -15.86993 -15.74472 -15.67273 -15.17503 -14.84347 -14.72021 -14.09913 -14.07134 -13.79049 -13.67531 -13.37307 -13.37023 -13.09939 -12.95983 -12.58912 -12.53239 -11.99052 -11.86891 -11.38504 -11.31314 -11.10636 -11.05855 -11.00651 -10.79801 -10.63242 -9.98323 -9.95406 -9.83641 -9.46184 -9.11471 -8.70602 -8.27343 -8.05483 -6.55066 -6.25905 -3.96887 0.84590 1.06730 2.39788 2.90429 2.95661 3.18446 3.22662 3.27837 3.47237 3.52387 3.68880 4.15669 4.24223 4.42901 4.46845 4.52541 4.62342 4.72298 4.84052 4.90591 4.97585 4.99530 5.09509 5.14341 5.24771 5.44792 5.46540 5.50855 5.54437 5.58366 5.61409 5.63022 5.79780 5.81505 5.89230 6.00775 6.04757 6.18972 6.45101 6.64194 7.11136 7.43392 7.55777 7.64654 8.31090 8.45464 9.19648 10.81555 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002364 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.533703 B =11841.753028 C =13023.614268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.536 3.464 12 O -0.514 6.514 13 N -0.619 5.619 14 C 0.104 3.896 15 C -0.131 4.131 16 C -0.125 4.125 17 C 0.141 3.859 18 H 0.090 0.910 19 N -0.713 5.713 20 C 0.439 3.561 21 C -0.244 4.244 22 C -0.004 4.004 23 C -0.254 4.254 24 C 0.351 3.649 25 F -0.115 7.115 26 N -0.579 5.579 27 C 0.098 3.902 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.097 0.903 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.593 -20.612 -4.688 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.356 5.356 14 C -0.020 4.020 15 C -0.170 4.170 16 C -0.163 4.163 17 C 0.034 3.966 18 H 0.108 0.892 19 N -0.345 5.345 20 C 0.203 3.797 21 C -0.268 4.268 22 C -0.030 4.030 23 C -0.278 4.278 24 C 0.197 3.803 25 F -0.094 7.094 26 N -0.302 5.302 27 C -0.026 4.026 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.115 0.885 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.201 -21.219 -4.296 22.815 hybrid contribution 1.691 1.218 -0.108 2.087 sum 8.891 -20.001 -4.403 22.326 Atomic orbital electron populations 1.70028 1.05951 1.27391 1.46858 1.24999 0.95034 0.99057 0.94519 0.86117 0.79566 0.81877 0.77936 1.19611 1.20553 1.20553 1.22886 0.94896 0.91563 1.58935 0.90876 1.85431 1.04901 0.96405 1.96703 1.23557 1.06557 0.95197 1.04769 1.20383 0.86191 0.86168 0.74877 1.90703 1.15150 1.85153 1.47724 1.48125 1.06483 1.05209 1.75786 1.21781 0.79931 1.01910 0.98336 1.21900 1.01246 0.94178 0.99694 1.21782 0.93568 0.97752 1.03179 1.21408 0.95426 0.79849 0.99902 0.89166 1.44508 1.19775 1.08611 1.61597 1.17779 0.86603 0.86718 0.88617 1.21597 0.97297 1.01115 1.06830 1.21271 0.94550 0.94517 0.92626 1.21510 1.03052 0.94231 1.09017 1.17621 0.89818 0.78931 0.93920 1.91617 1.91637 1.32231 1.93958 1.66175 1.20082 1.16977 1.27014 1.22010 1.01319 0.81519 0.97776 0.92204 0.89201 0.89169 0.91288 0.88790 0.90797 0.89833 0.90740 0.90911 0.75722 0.83933 0.83561 0.83869 0.88494 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.79 9.50 30.94 0.29 -14.49 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.87 4.50 36.01 0.16 -2.71 16 11 C 0.54 9.50 7.72 -10.99 -0.08 9.41 16 12 O -0.51 -11.11 15.30 5.56 0.08 -11.03 16 13 N -0.62 -7.82 2.98 -172.57 -0.52 -8.33 16 14 C 0.10 0.94 6.33 -3.71 -0.02 0.92 16 15 C -0.13 -0.89 6.08 -26.61 -0.16 -1.05 16 16 C -0.12 -0.78 5.35 -26.69 -0.14 -0.93 16 17 C 0.14 1.19 2.28 -67.83 -0.15 1.04 16 18 H 0.09 0.84 6.46 -51.93 -0.34 0.50 16 19 N -0.71 -6.27 5.25 -53.84 -0.28 -6.55 16 20 C 0.44 4.84 7.63 -155.01 -1.18 3.65 16 21 C -0.24 -2.57 8.88 -39.22 -0.35 -2.92 16 22 C 0.00 -0.04 10.16 -39.33 -0.40 -0.44 16 23 C -0.25 -2.43 10.08 -39.34 -0.40 -2.83 16 24 C 0.35 4.08 8.40 -17.37 -0.15 3.93 16 25 F -0.12 -1.34 17.29 2.25 0.04 -1.30 16 26 N -0.58 -7.15 10.40 -12.78 -0.13 -7.28 16 27 C 0.10 1.09 5.94 -3.57 -0.02 1.07 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.09 1.59 7.94 -51.92 -0.41 1.18 16 30 H 0.09 1.57 7.70 -51.91 -0.40 1.17 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.89 5.93 -51.93 -0.31 0.58 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.41 3.12 8.73 -40.82 -0.36 2.76 16 38 H 0.14 1.50 5.99 -52.49 -0.31 1.18 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.10 1.33 6.50 -51.93 -0.34 0.99 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -34.06 364.59 -9.91 -43.97 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.39 Total: 1.28 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.70 Total: -3.39 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.20 Total: -47.10 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.06 -9.91 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095287256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.830 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds