Wall clock time and date at job start Tue Mar 31 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86798 * 119.99855 * 2 1 4 4 H 1.48503 * 109.46717 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47005 * 299.99942 * 3 2 1 6 6 H 1.48493 * 109.47276 * 60.00139 * 3 2 1 7 7 C 1.38794 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99632 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63302 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 18 18 H 1.09002 * 109.49557 * 58.58503 * 17 16 15 19 19 N 1.46494 * 109.49999 * 178.65231 * 17 16 15 20 20 C 1.39001 * 120.00111 * 204.99820 * 19 17 16 21 21 C 1.39066 * 119.68560 * 359.72757 * 20 19 17 22 22 C 1.38379 * 119.15705 * 179.79148 * 21 20 19 23 23 C 1.38766 * 118.53220 * 0.47281 * 22 21 20 24 24 C 1.38369 * 119.30109 * 359.74582 * 23 22 21 25 25 F 1.35104 * 119.60017 * 179.97438 * 24 23 22 26 26 N 1.32131 * 120.79864 * 0.02715 * 24 23 22 27 27 C 1.47207 * 120.81153 * 180.13388 * 13 11 10 28 28 H 0.96993 * 119.99621 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47030 * 59.99687 * 10 9 7 30 30 H 1.09003 * 109.46809 * 300.00106 * 10 9 7 31 31 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 32 32 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 33 33 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 34 34 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 35 35 H 1.09003 * 109.46332 * 181.39145 * 16 15 14 36 36 H 1.09005 * 109.46002 * 301.35718 * 16 15 14 37 37 H 0.97005 * 120.00498 * 24.99773 * 19 17 16 38 38 H 1.08002 * 120.42518 * 0.02562 * 21 20 19 39 39 H 1.08001 * 120.73727 * 180.21949 * 22 21 20 40 40 H 1.07995 * 120.34662 * 179.72651 * 23 22 21 41 41 H 1.08996 * 109.53610 * 6.53712 * 27 13 11 42 42 H 1.08997 * 109.56315 * 246.16158 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8917 2.3964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0008 14 6 4.2959 -6.1173 -0.0003 15 6 4.9184 -6.8896 -1.1677 16 6 4.5143 -8.3626 -1.0729 17 6 2.9918 -8.4831 -1.1713 18 1 2.6530 -8.0528 -2.1137 19 7 2.6083 -9.8957 -1.1128 20 6 1.4113 -10.3150 -1.6814 21 6 0.5799 -9.3870 -2.2992 22 6 -0.6072 -9.8172 -2.8655 23 6 -0.9294 -11.1645 -2.7862 24 6 -0.0583 -12.0330 -2.1525 25 9 -0.3663 -13.3460 -2.0714 26 7 1.0706 -11.5937 -1.6250 27 6 2.3475 -7.7289 -0.0043 28 1 -0.4849 0.8400 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 4.7204 -6.4708 0.9394 32 1 4.5002 -5.0530 -0.1159 33 1 4.5614 -6.4743 -2.1102 34 1 6.0042 -6.8065 -1.1211 35 1 4.9761 -8.9191 -1.8886 36 1 4.8499 -8.7706 -0.1194 37 1 3.1897 -10.5386 -0.6772 38 1 0.8590 -8.3445 -2.3398 39 1 -1.2702 -9.1190 -3.3547 40 1 -1.8506 -11.5313 -3.2142 41 1 1.2641 -7.7275 -0.1240 42 1 2.6128 -8.2141 0.9350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095287256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:31 Heat of formation + Delta-G solvation = -55.171601 kcal Electronic energy + Delta-G solvation = -26294.593617 eV Core-core repulsion = 22314.583977 eV Total energy + Delta-G solvation = -3980.009640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.05955 -41.57332 -40.87953 -38.79875 -36.40077 -34.57202 -33.83089 -33.36022 -31.96037 -30.72012 -29.23476 -27.67463 -26.25827 -24.82949 -24.52335 -23.14126 -21.99316 -20.44958 -19.55444 -19.09383 -18.69203 -18.16186 -17.25363 -17.11555 -16.94350 -16.86104 -16.76452 -16.52564 -16.15758 -15.70108 -15.61660 -14.99867 -14.73756 -14.59361 -14.45333 -14.31332 -14.21690 -14.04795 -13.70881 -13.45885 -13.26462 -13.14146 -12.90982 -12.62921 -12.56052 -12.02458 -12.01167 -11.68837 -11.67833 -11.42016 -11.14860 -10.91472 -10.82207 -10.76643 -10.23597 -9.74569 -8.84841 -8.65636 -8.33684 -6.11531 0.00614 0.28169 1.24674 1.42409 1.44595 1.54590 1.57641 1.72774 2.15957 2.28411 2.64970 2.87885 3.00848 3.25925 3.55003 3.67063 3.74524 3.80747 3.87015 3.92701 4.03953 4.14314 4.21749 4.26136 4.28107 4.45326 4.52487 4.56244 4.68185 4.73802 4.79257 4.88530 4.91115 5.06069 5.12303 5.21943 5.30049 5.41160 5.43628 5.54907 5.85864 6.21176 6.26061 6.37037 6.87119 7.08046 7.12966 8.75706 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002364 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.533703 B =11841.753028 C =13023.614268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.122 4.122 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.604 5.604 14 C 0.093 3.907 15 C -0.124 4.124 16 C -0.117 4.117 17 C 0.150 3.850 18 H 0.081 0.919 19 N -0.704 5.704 20 C 0.429 3.571 21 C -0.254 4.254 22 C -0.005 4.005 23 C -0.247 4.247 24 C 0.330 3.670 25 F -0.120 7.120 26 N -0.600 5.600 27 C 0.099 3.901 28 H 0.270 0.730 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.139 0.861 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -20.884 -5.001 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.690 4.690 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.273 4.273 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.338 5.338 14 C -0.029 4.029 15 C -0.163 4.163 16 C -0.155 4.155 17 C 0.044 3.956 18 H 0.099 0.901 19 N -0.336 5.336 20 C 0.192 3.808 21 C -0.279 4.279 22 C -0.031 4.031 23 C -0.271 4.271 24 C 0.177 3.823 25 F -0.099 7.099 26 N -0.324 5.324 27 C -0.026 4.026 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.251 0.749 38 H 0.157 0.843 39 H 0.187 0.813 40 H 0.185 0.815 41 H 0.084 0.916 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.262 -21.539 -4.608 24.300 hybrid contribution 0.797 1.169 0.004 1.415 sum 11.059 -20.370 -4.603 23.631 Atomic orbital electron populations 1.70195 1.07989 1.28496 1.48187 1.26126 0.95947 1.03325 0.93835 0.84916 0.78733 0.76395 0.77980 1.17817 1.20030 1.20128 1.23219 0.95347 0.91841 1.58559 0.89767 1.85628 1.10693 0.99345 1.97020 1.23367 1.03346 0.94096 1.06520 1.20165 0.85972 0.86664 0.75091 1.90687 1.17296 1.85728 1.50561 1.48080 1.07677 1.04627 1.73442 1.22167 0.77354 1.02585 1.00779 1.21886 1.02713 0.93729 0.97968 1.21779 0.91187 0.97807 1.04762 1.21313 0.97045 0.79200 0.98048 0.90075 1.44468 1.19183 1.08749 1.61209 1.17959 0.87355 0.86476 0.88991 1.21708 0.97978 1.00928 1.07257 1.21601 0.94397 0.94954 0.92099 1.21761 1.03392 0.93903 1.08003 1.17928 0.90383 0.79109 0.94866 1.91598 1.91683 1.32566 1.94093 1.66145 1.20810 1.17605 1.27872 1.22102 0.99891 0.80851 0.99710 0.92059 0.87413 0.87113 0.88928 0.88983 0.91656 0.86884 0.89254 0.89236 0.74886 0.84331 0.81331 0.81464 0.91582 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 2 C 0.01 0.69 5.49 84.85 0.47 1.15 16 3 Si 1.00 42.62 29.55 68.60 2.03 44.64 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.54 -30.10 9.50 67.95 0.65 -29.45 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 10 C -0.12 -4.62 4.50 71.24 0.32 -4.30 16 11 C 0.53 18.98 7.72 87.66 0.68 19.66 16 12 O -0.56 -25.46 15.30 -3.03 -0.05 -25.51 16 13 N -0.60 -14.46 2.98 -818.27 -2.44 -16.91 16 14 C 0.09 1.39 6.33 86.36 0.55 1.93 16 15 C -0.12 -1.21 6.08 30.67 0.19 -1.02 16 16 C -0.12 -1.06 5.35 30.62 0.16 -0.89 16 17 C 0.15 2.31 2.28 45.06 0.10 2.41 16 18 H 0.08 1.44 6.46 -2.39 -0.02 1.42 16 19 N -0.70 -11.52 5.25 -324.27 -1.70 -13.23 16 20 C 0.43 9.31 7.63 133.03 1.02 10.33 16 21 C -0.25 -5.36 8.88 22.50 0.20 -5.16 16 22 C -0.01 -0.10 10.16 22.43 0.23 0.13 16 23 C -0.25 -4.51 10.08 22.43 0.23 -4.28 16 24 C 0.33 7.60 8.40 84.68 0.71 8.31 16 25 F -0.12 -2.79 17.29 44.97 0.78 -2.01 16 26 N -0.60 -14.72 10.40 -194.34 -2.02 -16.74 16 27 C 0.10 2.11 5.94 86.30 0.51 2.63 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.11 3.67 7.94 -2.39 -0.02 3.65 16 30 H 0.11 3.70 7.70 -2.39 -0.02 3.69 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.45 5.93 -2.39 -0.01 1.43 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.41 5.61 8.73 -92.70 -0.81 4.80 16 38 H 0.14 3.00 5.99 -2.91 -0.02 2.98 16 39 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.07 1.87 6.50 -2.39 -0.02 1.86 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.78 364.59 1.97 -75.81 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.25 Total: 17.03 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.00 Total: 1.44 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -5.88 Total: -101.87 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.78 1.97 -75.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095287256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.638 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds