Wall clock time and date at job start Tue Mar 31 2020 22:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47390 * 239.99928 * 3 2 1 5 5 H 1.48503 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47222 * 119.99997 * 3 2 1 7 7 C 1.38794 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00250 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00382 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.46992 * 120.60795 * 0.02599 * 13 11 10 15 15 C 1.53196 * 108.73878 * 126.38575 * 14 13 11 16 16 C 1.53039 * 109.33748 * 54.61838 * 15 14 13 17 17 C 1.53042 * 109.54198 * 298.62051 * 16 15 14 18 18 H 1.08998 * 109.49487 * 301.38422 * 17 16 15 19 19 N 1.46490 * 109.50257 * 181.31697 * 17 16 15 20 20 C 1.38997 * 120.00404 * 154.99655 * 19 17 16 21 21 C 1.39067 * 119.68522 * 359.72908 * 20 19 17 22 22 C 1.38375 * 119.15360 * 179.79350 * 21 20 19 23 23 C 1.38755 * 118.53477 * 0.46874 * 22 21 20 24 24 C 1.38372 * 119.30677 * 359.75544 * 23 22 21 25 25 F 1.35100 * 119.60097 * 179.97438 * 24 23 22 26 26 N 1.32136 * 120.78689 * 0.02562 * 24 23 22 27 27 C 1.46922 * 120.63264 * 179.97438 * 13 11 10 28 28 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00096 * 10 9 7 30 30 H 1.08998 * 109.46783 * 300.00677 * 10 9 7 31 31 H 1.09001 * 109.63362 * 6.59761 * 14 13 11 32 32 H 1.08996 * 109.58160 * 246.14366 * 14 13 11 33 33 H 1.09002 * 109.49815 * 294.65150 * 15 14 13 34 34 H 1.09000 * 109.49595 * 174.58548 * 15 14 13 35 35 H 1.09006 * 109.46255 * 58.64043 * 16 15 14 36 36 H 1.08998 * 109.45791 * 178.60886 * 16 15 14 37 37 H 0.97008 * 119.99540 * 334.99878 * 19 17 16 38 38 H 1.07999 * 120.42335 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.73128 * 180.22525 * 22 21 20 40 40 H 1.08006 * 120.34670 * 179.77209 * 23 22 21 41 41 H 1.09004 * 109.58306 * 113.84962 * 27 13 11 42 42 H 1.08994 * 109.70589 * 353.48918 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3432 -0.0018 14 6 4.2964 -6.1168 -0.0013 15 6 4.9150 -6.8923 1.1661 16 6 4.5078 -8.3643 1.0690 17 6 2.9849 -8.4817 1.1650 18 1 2.6457 -8.0523 2.1077 19 7 2.5983 -9.8933 1.1036 20 6 1.3996 -10.3110 1.6698 21 6 0.5749 -9.3841 2.2981 22 6 -0.6180 -9.8112 2.8543 23 6 -0.9432 -11.1576 2.7722 24 6 -0.0740 -12.0267 2.1366 25 9 -0.3844 -13.3390 2.0537 26 7 1.0563 -11.5887 1.6109 27 6 2.3439 -7.7247 -0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1244 -3.7313 -0.8905 31 1 4.5012 -5.0528 0.1175 32 1 4.7215 -6.4702 -0.9407 33 1 4.5575 -6.4774 2.1086 34 1 6.0011 -6.8115 1.1217 35 1 4.8440 -8.7720 0.1156 36 1 4.9670 -8.9226 1.8848 37 1 3.1790 -10.5366 0.6677 38 1 0.8604 -8.3438 2.3486 39 1 -1.2795 -9.1126 3.3451 40 1 -1.8651 -11.5234 3.1995 41 1 2.6096 -8.2093 -0.9414 42 1 1.2603 -7.7232 0.1150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095287257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:35 Heat of formation + Delta-G solvation = -32.965424 kcal Electronic energy + Delta-G solvation = -26297.132875 eV Core-core repulsion = 22318.086168 eV Total energy + Delta-G solvation = -3979.046708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18939 -40.69668 -39.84424 -37.74401 -35.50010 -32.97494 -32.53036 -32.45736 -31.00919 -29.59252 -28.27374 -25.65356 -25.25125 -23.98242 -23.72999 -22.38376 -21.12060 -19.24083 -18.35927 -17.92206 -17.67748 -16.84531 -16.38244 -16.25747 -15.86970 -15.74623 -15.67410 -15.17528 -14.83975 -14.71544 -14.09722 -14.06881 -13.78881 -13.67539 -13.37256 -13.37042 -13.10189 -12.95677 -12.58558 -12.53388 -11.98980 -11.86775 -11.38353 -11.31700 -11.08221 -11.07216 -11.00346 -10.80689 -10.63191 -9.97707 -9.95739 -9.85278 -9.46181 -9.09778 -8.70482 -8.28037 -8.05181 -6.54960 -6.25321 -3.96547 0.84714 1.06994 2.40225 2.90690 2.95625 3.20403 3.22489 3.26218 3.47418 3.52372 3.68981 4.16212 4.24311 4.42980 4.46947 4.52676 4.62542 4.72397 4.83932 4.90641 4.97734 4.99759 5.09859 5.14278 5.24881 5.44762 5.46737 5.51016 5.54428 5.58505 5.61440 5.63158 5.79943 5.81751 5.89310 6.00953 6.04804 6.19239 6.45794 6.64558 7.11346 7.43040 7.55328 7.64855 8.30895 8.45488 9.19869 10.82008 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002366 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.710005 B =11829.259133 C =13013.366727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.619 5.619 14 C 0.104 3.896 15 C -0.131 4.131 16 C -0.125 4.125 17 C 0.140 3.860 18 H 0.090 0.910 19 N -0.713 5.713 20 C 0.439 3.561 21 C -0.244 4.244 22 C -0.004 4.004 23 C -0.254 4.254 24 C 0.351 3.649 25 F -0.115 7.115 26 N -0.579 5.579 27 C 0.098 3.902 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.564 -20.581 4.677 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.387 6.387 13 N -0.356 5.356 14 C -0.019 4.019 15 C -0.170 4.170 16 C -0.163 4.163 17 C 0.034 3.966 18 H 0.108 0.892 19 N -0.345 5.345 20 C 0.203 3.797 21 C -0.268 4.268 22 C -0.030 4.030 23 C -0.278 4.278 24 C 0.197 3.803 25 F -0.094 7.094 26 N -0.303 5.303 27 C -0.026 4.026 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.243 0.757 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.164 -21.185 4.285 22.771 hybrid contribution 1.709 1.213 0.105 2.098 sum 8.873 -19.972 4.390 22.291 Atomic orbital electron populations 1.70006 1.05957 1.27613 1.46659 1.24989 0.95029 0.99029 0.94497 0.86229 0.79251 0.81248 0.78803 1.19931 1.20800 1.19921 1.22806 0.94833 0.91606 1.59200 0.90978 1.85422 1.04872 0.96349 1.96715 1.23555 1.06570 0.95214 1.04763 1.20389 0.86200 0.86194 0.74873 1.90703 1.15153 1.85158 1.47709 1.48075 1.06493 1.05216 1.75793 1.21800 0.79867 1.01893 0.98341 1.21903 1.01251 0.94183 0.99697 1.21782 0.93566 0.97753 1.03176 1.21417 0.95404 0.79868 0.99914 0.89164 1.44510 1.19620 1.08694 1.61672 1.17775 0.86608 0.86723 0.88596 1.21594 0.97274 1.01187 1.06791 1.21266 0.94498 0.94518 0.92674 1.21509 1.03112 0.94229 1.08969 1.17621 0.89797 0.78948 0.93916 1.91616 1.91573 1.32302 1.93949 1.66170 1.19951 1.17001 1.27142 1.21953 1.01325 0.81598 0.97755 0.92090 0.89165 0.89207 0.88752 0.91266 0.90797 0.89845 0.90914 0.90744 0.75728 0.83939 0.83563 0.83872 0.91430 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 8 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.87 4.50 36.00 0.16 -2.71 16 11 C 0.54 9.49 7.72 -10.99 -0.08 9.40 16 12 O -0.51 -11.11 15.28 5.55 0.08 -11.02 16 13 N -0.62 -7.81 2.97 -172.74 -0.51 -8.33 16 14 C 0.10 0.94 6.34 -3.67 -0.02 0.92 16 15 C -0.13 -0.89 6.08 -26.61 -0.16 -1.05 16 16 C -0.12 -0.79 5.35 -26.69 -0.14 -0.93 16 17 C 0.14 1.19 2.29 -67.84 -0.16 1.04 16 18 H 0.09 0.84 6.43 -51.93 -0.33 0.51 16 19 N -0.71 -6.28 5.25 -53.85 -0.28 -6.57 16 20 C 0.44 4.85 7.63 -155.02 -1.18 3.67 16 21 C -0.24 -2.57 8.90 -39.22 -0.35 -2.92 16 22 C 0.00 -0.04 10.16 -39.34 -0.40 -0.44 16 23 C -0.25 -2.44 10.08 -39.34 -0.40 -2.83 16 24 C 0.35 4.08 8.41 -17.37 -0.15 3.94 16 25 F -0.12 -1.34 17.29 2.25 0.04 -1.30 16 26 N -0.58 -7.16 10.40 -12.78 -0.13 -7.29 16 27 C 0.10 1.10 5.94 -3.73 -0.02 1.07 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.09 1.57 7.69 -51.92 -0.40 1.17 16 30 H 0.09 1.59 7.94 -51.92 -0.41 1.18 16 31 H 0.09 0.89 5.94 -51.93 -0.31 0.58 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.41 3.13 8.73 -40.82 -0.36 2.77 16 38 H 0.14 1.50 6.02 -52.49 -0.32 1.18 16 39 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.34 6.55 -51.93 -0.34 1.00 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -34.03 364.65 -9.91 -43.94 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.39 Total: 1.37 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.70 Total: -3.42 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.20 Total: -47.14 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.03 -9.91 -43.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095287257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.970 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds