Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00100 * 2 1 4 4 H 1.48498 * 109.47390 * 239.99928 * 3 2 1 5 5 H 1.48503 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47222 * 119.99997 * 3 2 1 7 7 C 1.38794 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00267 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00250 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00382 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00259 * 179.97438 * 11 10 9 14 14 C 1.46992 * 120.60795 * 0.02599 * 13 11 10 15 15 C 1.53196 * 108.73878 * 126.38575 * 14 13 11 16 16 C 1.53039 * 109.33748 * 54.61838 * 15 14 13 17 17 C 1.53042 * 109.54198 * 298.62051 * 16 15 14 18 18 H 1.08998 * 109.49487 * 301.38422 * 17 16 15 19 19 N 1.46490 * 109.50257 * 181.31697 * 17 16 15 20 20 C 1.38997 * 120.00404 * 154.99655 * 19 17 16 21 21 C 1.39067 * 119.68522 * 359.72908 * 20 19 17 22 22 C 1.38375 * 119.15360 * 179.79350 * 21 20 19 23 23 C 1.38755 * 118.53477 * 0.46874 * 22 21 20 24 24 C 1.38372 * 119.30677 * 359.75544 * 23 22 21 25 25 F 1.35100 * 119.60097 * 179.97438 * 24 23 22 26 26 N 1.32136 * 120.78689 * 0.02562 * 24 23 22 27 27 C 1.46922 * 120.63264 * 179.97438 * 13 11 10 28 28 H 0.97005 * 119.99678 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00096 * 10 9 7 30 30 H 1.08998 * 109.46783 * 300.00677 * 10 9 7 31 31 H 1.09001 * 109.63362 * 6.59761 * 14 13 11 32 32 H 1.08996 * 109.58160 * 246.14366 * 14 13 11 33 33 H 1.09002 * 109.49815 * 294.65150 * 15 14 13 34 34 H 1.09000 * 109.49595 * 174.58548 * 15 14 13 35 35 H 1.09006 * 109.46255 * 58.64043 * 16 15 14 36 36 H 1.08998 * 109.45791 * 178.60886 * 16 15 14 37 37 H 0.97008 * 119.99540 * 334.99878 * 19 17 16 38 38 H 1.07999 * 120.42335 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.73128 * 180.22525 * 22 21 20 40 40 H 1.08006 * 120.34670 * 179.77209 * 23 22 21 41 41 H 1.09004 * 109.58306 * 113.84962 * 27 13 11 42 42 H 1.08994 * 109.70589 * 353.48918 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5023 -0.0021 13 7 2.8440 -6.3432 -0.0018 14 6 4.2964 -6.1168 -0.0013 15 6 4.9150 -6.8923 1.1661 16 6 4.5078 -8.3643 1.0690 17 6 2.9849 -8.4817 1.1650 18 1 2.6457 -8.0523 2.1077 19 7 2.5983 -9.8933 1.1036 20 6 1.3996 -10.3110 1.6698 21 6 0.5749 -9.3841 2.2981 22 6 -0.6180 -9.8112 2.8543 23 6 -0.9432 -11.1576 2.7722 24 6 -0.0740 -12.0267 2.1366 25 9 -0.3844 -13.3390 2.0537 26 7 1.0563 -11.5887 1.6109 27 6 2.3439 -7.7247 -0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8895 30 1 3.1244 -3.7313 -0.8905 31 1 4.5012 -5.0528 0.1175 32 1 4.7215 -6.4702 -0.9407 33 1 4.5575 -6.4774 2.1086 34 1 6.0011 -6.8115 1.1217 35 1 4.8440 -8.7720 0.1156 36 1 4.9670 -8.9226 1.8848 37 1 3.1790 -10.5366 0.6677 38 1 0.8604 -8.3438 2.3486 39 1 -1.2795 -9.1126 3.3451 40 1 -1.8651 -11.5234 3.1995 41 1 2.6096 -8.2093 -0.9414 42 1 1.2603 -7.7232 0.1150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095287257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = -54.955215 kcal Electronic energy + Delta-G solvation = -26298.086424 eV Core-core repulsion = 22318.086168 eV Total energy + Delta-G solvation = -3980.000257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.06061 -41.58092 -40.88581 -38.79858 -36.40100 -34.57087 -33.83039 -33.36125 -31.97221 -30.71977 -29.23239 -27.66856 -26.25247 -24.83368 -24.52307 -23.14132 -21.99333 -20.44904 -19.55333 -19.09404 -18.69295 -18.16440 -17.25845 -17.11280 -16.94078 -16.85789 -16.76737 -16.52473 -16.15767 -15.70026 -15.61409 -14.99792 -14.73605 -14.59326 -14.44824 -14.31201 -14.22258 -14.04811 -13.70838 -13.45683 -13.26738 -13.15004 -12.85418 -12.64214 -12.58114 -12.02653 -12.01492 -11.71879 -11.68056 -11.42041 -11.11422 -10.91498 -10.81879 -10.76898 -10.24215 -9.74407 -8.84687 -8.65571 -8.33098 -6.11221 0.00604 0.28286 1.24758 1.44613 1.45132 1.53638 1.56717 1.72834 2.16301 2.29055 2.65056 2.87887 3.01183 3.25963 3.54877 3.66994 3.74590 3.80869 3.87207 3.92693 4.04048 4.14248 4.21898 4.26193 4.28251 4.45347 4.52512 4.56238 4.68280 4.73948 4.79450 4.88435 4.91097 5.06197 5.12316 5.21976 5.30169 5.41403 5.43159 5.55276 5.85944 6.20868 6.25779 6.37085 6.87163 7.08260 7.13058 8.75769 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002366 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.710005 B =11829.259133 C =13013.366727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.122 4.122 11 C 0.533 3.467 12 O -0.564 6.564 13 N -0.603 5.603 14 C 0.093 3.907 15 C -0.125 4.125 16 C -0.117 4.117 17 C 0.150 3.850 18 H 0.081 0.919 19 N -0.704 5.704 20 C 0.429 3.571 21 C -0.254 4.254 22 C -0.005 4.005 23 C -0.247 4.247 24 C 0.330 3.670 25 F -0.120 7.120 26 N -0.600 5.600 27 C 0.099 3.901 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.414 0.586 38 H 0.139 0.861 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.081 0.919 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 -20.840 4.994 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.273 4.273 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.338 5.338 14 C -0.028 4.028 15 C -0.163 4.163 16 C -0.155 4.155 17 C 0.044 3.956 18 H 0.099 0.901 19 N -0.336 5.336 20 C 0.192 3.808 21 C -0.279 4.279 22 C -0.031 4.031 23 C -0.271 4.271 24 C 0.177 3.823 25 F -0.099 7.099 26 N -0.324 5.324 27 C -0.026 4.026 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.157 0.843 39 H 0.187 0.813 40 H 0.185 0.815 41 H 0.099 0.901 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.238 -21.493 4.601 24.248 hybrid contribution 0.813 1.158 -0.009 1.415 sum 11.052 -20.335 4.593 23.596 Atomic orbital electron populations 1.70181 1.07997 1.28627 1.48035 1.26120 0.95938 1.03314 0.93798 0.85023 0.77813 0.75744 0.79553 1.18654 1.20625 1.18509 1.23158 0.95357 0.91878 1.58806 0.89756 1.85620 1.10679 0.99308 1.97033 1.23366 1.03354 0.94104 1.06521 1.20174 0.85983 0.86692 0.75086 1.90687 1.17302 1.85732 1.50545 1.48034 1.07690 1.04612 1.73452 1.22189 0.77275 1.02583 1.00779 1.21889 1.02730 0.93720 0.97977 1.21779 0.91174 0.97822 1.04755 1.21321 0.97031 0.79213 0.98056 0.90072 1.44470 1.19027 1.08833 1.61288 1.17956 0.87362 0.86485 0.88974 1.21707 0.97955 1.01007 1.07205 1.21597 0.94347 0.94956 0.92154 1.21761 1.03458 0.93899 1.07951 1.17928 0.90359 0.79129 0.94866 1.91597 1.91619 1.32635 1.94084 1.66140 1.20678 1.17630 1.27999 1.22042 0.99884 0.80959 0.99688 0.92050 0.87098 0.87414 0.88922 0.88904 0.91655 0.86890 0.89242 0.89262 0.74895 0.84322 0.81334 0.81464 0.90123 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -30.23 9.50 67.95 0.65 -29.59 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.12 -4.62 4.50 71.23 0.32 -4.30 16 11 C 0.53 18.96 7.72 87.65 0.68 19.63 16 12 O -0.56 -25.46 15.28 -3.04 -0.05 -25.51 16 13 N -0.60 -14.45 2.97 -818.82 -2.44 -16.88 16 14 C 0.09 1.39 6.34 86.35 0.55 1.94 16 15 C -0.12 -1.21 6.08 30.67 0.19 -1.02 16 16 C -0.12 -1.06 5.35 30.62 0.16 -0.90 16 17 C 0.15 2.31 2.29 45.06 0.10 2.41 16 18 H 0.08 1.44 6.43 -2.39 -0.02 1.43 16 19 N -0.70 -11.57 5.25 -324.29 -1.70 -13.27 16 20 C 0.43 9.34 7.63 133.04 1.02 10.35 16 21 C -0.25 -5.37 8.90 22.50 0.20 -5.17 16 22 C -0.01 -0.10 10.16 22.43 0.23 0.13 16 23 C -0.25 -4.52 10.08 22.43 0.23 -4.30 16 24 C 0.33 7.61 8.41 84.68 0.71 8.32 16 25 F -0.12 -2.79 17.29 44.97 0.78 -2.01 16 26 N -0.60 -14.75 10.40 -194.34 -2.02 -16.77 16 27 C 0.10 2.12 5.94 86.35 0.51 2.63 16 28 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 29 H 0.11 3.71 7.69 -2.39 -0.02 3.69 16 30 H 0.11 3.67 7.94 -2.40 -0.02 3.65 16 31 H 0.09 1.45 5.94 -2.39 -0.01 1.44 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.41 5.64 8.73 -92.70 -0.81 4.83 16 38 H 0.14 3.00 6.02 -2.91 -0.02 2.98 16 39 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.88 6.55 -2.39 -0.02 1.86 16 Total: -1.00 -77.75 364.65 1.98 -75.76 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.25 Total: 17.29 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.00 Total: 1.34 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -5.87 Total: -101.96 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -77.75 1.98 -75.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095287257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.810 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds