Wall clock time and date at job start Tue Mar 31 2020 22:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48504 * 109.47040 * 239.99190 * 3 2 1 5 5 H 1.48496 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46761 * 119.99758 * 3 2 1 7 7 C 1.38796 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00315 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00196 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47096 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99879 * 180.02562 * 13 11 10 15 15 C 1.53124 * 109.52638 * 154.99919 * 14 13 11 16 16 C 1.53032 * 109.28012 * 177.55604 * 15 14 13 17 17 N 1.46846 * 109.52260 * 300.82015 * 16 15 14 18 18 C 1.39003 * 111.00085 * 185.84078 * 17 16 15 19 19 C 1.39067 * 119.69027 * 179.72668 * 18 17 16 20 20 C 1.38379 * 119.15671 * 179.79659 * 19 18 17 21 21 C 1.38760 * 118.52959 * 0.46896 * 20 19 18 22 22 C 1.38366 * 119.30988 * 359.75296 * 21 20 19 23 23 F 1.35100 * 119.60342 * 179.97438 * 22 21 20 24 24 N 1.32136 * 120.79361 * 0.02562 * 22 21 20 25 25 C 1.46846 * 111.19997 * 61.74591 * 17 16 15 26 26 C 1.53040 * 109.51964 * 298.25655 * 25 17 16 27 27 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46941 * 59.99988 * 10 9 7 29 29 H 1.09000 * 109.46879 * 299.99473 * 10 9 7 30 30 H 0.97004 * 119.99947 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.58180 * 34.83739 * 14 13 11 32 32 H 1.08999 * 109.49853 * 57.61228 * 15 14 13 33 33 H 1.08996 * 109.49839 * 297.50259 * 15 14 13 34 34 H 1.09001 * 109.46314 * 180.80749 * 16 15 14 35 35 H 1.08997 * 109.46418 * 60.83870 * 16 15 14 36 36 H 1.08003 * 120.42070 * 359.97438 * 19 18 17 37 37 H 1.07993 * 120.73535 * 180.22148 * 20 19 18 38 38 H 1.08003 * 120.34234 * 179.77591 * 21 20 19 39 39 H 1.08996 * 109.46231 * 58.27402 * 25 17 16 40 40 H 1.09004 * 109.46418 * 178.24241 * 25 17 16 41 41 H 1.09004 * 109.50602 * 299.23671 * 26 25 17 42 42 H 1.08998 * 109.50366 * 179.12192 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.3755 -8.6530 -0.6096 16 6 2.8584 -10.0921 -0.5511 17 7 2.5976 -10.4635 0.8454 18 6 2.2516 -11.8059 0.9477 19 6 1.9712 -12.3518 2.1956 20 6 1.6238 -13.6884 2.2841 21 6 1.5777 -14.4398 1.1184 22 6 1.8732 -13.8341 -0.0900 23 9 1.8306 -14.5601 -1.2285 24 7 2.1974 -12.5542 -0.1438 25 6 1.5627 -9.6068 1.4383 26 6 2.0411 -8.1531 1.4392 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 3.8009 -6.1835 -0.0003 31 1 1.4126 -7.7615 -0.5855 32 1 4.3055 -8.5772 -0.0462 33 1 3.5542 -8.3723 -1.6475 34 1 3.6064 -10.7641 -0.9719 35 1 1.9358 -10.1702 -1.1261 36 1 2.0212 -11.7398 3.0840 37 1 1.3975 -14.1377 3.2397 38 1 1.3136 -15.4864 1.1541 39 1 0.6461 -9.6871 0.8541 40 1 1.3696 -9.9262 2.4625 41 1 2.9502 -8.0694 2.0348 42 1 1.2665 -7.5153 1.8651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095405579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:37 Heat of formation + Delta-G solvation = -32.122335 kcal Electronic energy + Delta-G solvation = -25756.288188 eV Core-core repulsion = 21777.278039 eV Total energy + Delta-G solvation = -3979.010149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.38165 -41.20099 -39.62931 -38.23885 -35.17295 -33.18645 -32.43837 -32.23774 -31.20621 -29.94115 -28.57679 -25.52847 -24.78975 -24.54228 -22.82668 -22.61269 -20.42073 -20.18961 -18.58823 -17.94229 -17.65238 -16.69206 -16.51691 -16.41026 -16.29271 -15.87683 -15.30761 -15.09728 -14.81121 -14.62383 -14.23711 -14.13209 -13.80984 -13.66624 -13.50167 -13.35226 -13.07876 -12.75963 -12.60456 -12.50377 -12.03080 -11.84373 -11.56934 -11.15192 -11.05262 -11.04102 -10.86159 -10.74716 -10.56939 -10.17330 -10.06521 -9.83012 -9.40005 -9.07118 -8.91507 -8.56743 -8.25160 -6.50965 -6.22300 -3.93023 0.49170 0.67929 2.75268 3.00351 3.06625 3.13146 3.22969 3.26917 3.30108 3.42504 3.68326 4.06537 4.19906 4.36441 4.47451 4.54169 4.58241 4.67505 4.79349 4.84353 5.00700 5.08299 5.12802 5.17763 5.23608 5.30090 5.31996 5.38968 5.54373 5.59845 5.61411 5.65914 5.73158 5.87611 5.90047 5.99466 6.10204 6.13442 6.27550 6.61490 6.66722 7.26153 7.58568 7.69953 8.34296 8.59540 9.22927 10.85052 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.001755 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.184774 B =15948.297939 C =16110.446266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.144 3.856 15 C -0.127 4.127 16 C 0.070 3.930 17 N -0.474 5.474 18 C 0.354 3.646 19 C -0.198 4.198 20 C -0.025 4.025 21 C -0.227 4.227 22 C 0.335 3.665 23 F -0.113 7.113 24 N -0.553 5.553 25 C 0.063 3.937 26 C -0.129 4.129 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.237 -28.615 4.512 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.039 3.961 15 C -0.166 4.166 16 C -0.057 4.057 17 N -0.190 5.190 18 C 0.121 3.879 19 C -0.221 4.221 20 C -0.051 4.051 21 C -0.250 4.250 22 C 0.180 3.820 23 F -0.092 7.092 24 N -0.274 5.274 25 C -0.063 4.063 26 C -0.168 4.168 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.074 0.926 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.679 -28.315 3.913 29.143 hybrid contribution 1.765 0.694 0.091 1.898 sum 7.444 -27.620 4.004 28.885 Atomic orbital electron populations 1.70006 1.05946 1.27571 1.46774 1.24991 0.95032 0.99024 0.94527 0.86225 0.79238 0.81241 0.78802 1.19944 1.20807 1.19936 1.22828 0.94878 0.91675 1.59070 0.90976 1.85383 1.04931 0.96317 1.96728 1.23537 1.06578 0.95411 1.04932 1.20330 0.86564 0.86306 0.74867 1.90698 1.15359 1.85578 1.47530 1.46045 1.09932 1.05053 1.77702 1.20932 0.97934 0.81192 0.96079 1.21957 0.99146 0.93288 1.02171 1.21969 1.01981 0.95911 0.85889 1.59184 1.40235 0.99164 1.20466 1.19486 0.89987 0.90405 0.87995 1.21645 1.06143 0.96564 0.97758 1.21344 0.92547 0.92775 0.98419 1.21684 1.08979 1.02667 0.91627 1.17863 0.95744 0.86417 0.81929 1.91638 1.93270 1.74783 1.49518 1.66834 1.20811 1.06351 1.33371 1.22311 0.91297 0.92439 1.00269 1.22055 1.03096 0.93771 0.97886 0.92127 0.89217 0.89232 0.76746 0.89463 0.90344 0.90018 0.89029 0.92605 0.83586 0.83444 0.83609 0.92830 0.89248 0.90439 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 11 C 0.53 9.56 7.82 -10.99 -0.09 9.47 16 12 O -0.52 -11.32 15.52 5.55 0.09 -11.24 16 13 N -0.73 -9.24 5.08 -53.69 -0.27 -9.52 16 14 C 0.14 1.60 2.52 -67.81 -0.17 1.43 16 15 C -0.13 -1.10 5.57 -26.65 -0.15 -1.25 16 16 C 0.07 0.65 4.65 -3.84 -0.02 0.63 16 17 N -0.47 -4.30 4.68 -173.24 -0.81 -5.11 16 18 C 0.35 3.31 6.40 -155.01 -0.99 2.31 16 19 C -0.20 -1.36 9.18 -39.22 -0.36 -1.72 16 20 C -0.03 -0.14 10.16 -39.34 -0.40 -0.54 16 21 C -0.23 -1.50 10.08 -39.34 -0.40 -1.90 16 22 C 0.33 3.19 8.40 -17.37 -0.15 3.04 16 23 F -0.11 -1.14 17.29 2.25 0.04 -1.10 16 24 N -0.55 -5.94 8.69 -12.78 -0.11 -6.06 16 25 C 0.06 0.54 5.25 -3.83 -0.02 0.52 16 26 C -0.13 -1.30 5.67 -26.65 -0.15 -1.45 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.40 3.90 8.61 -40.82 -0.35 3.55 16 31 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.88 7.70 -51.93 -0.40 0.48 16 35 H 0.06 0.58 8.11 -51.93 -0.42 0.15 16 36 H 0.15 0.74 7.16 -52.48 -0.38 0.36 16 37 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 38 H 0.15 0.62 8.06 -52.48 -0.42 0.19 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.61 6.68 -51.93 -0.35 0.26 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -34.73 367.84 -10.13 -44.87 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.64 Total: 0.63 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.47 Total: -5.15 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.46 Total: -46.00 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.73 -10.13 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.747 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds