Wall clock time and date at job start Tue Mar 31 2020 22:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48504 * 109.47040 * 239.99190 * 3 2 1 5 5 H 1.48496 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46761 * 119.99758 * 3 2 1 7 7 C 1.38796 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00315 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00196 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47096 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99879 * 180.02562 * 13 11 10 15 15 C 1.53124 * 109.52638 * 154.99919 * 14 13 11 16 16 C 1.53032 * 109.28012 * 177.55604 * 15 14 13 17 17 N 1.46846 * 109.52260 * 300.82015 * 16 15 14 18 18 C 1.39003 * 111.00085 * 185.84078 * 17 16 15 19 19 C 1.39067 * 119.69027 * 179.72668 * 18 17 16 20 20 C 1.38379 * 119.15671 * 179.79659 * 19 18 17 21 21 C 1.38760 * 118.52959 * 0.46896 * 20 19 18 22 22 C 1.38366 * 119.30988 * 359.75296 * 21 20 19 23 23 F 1.35100 * 119.60342 * 179.97438 * 22 21 20 24 24 N 1.32136 * 120.79361 * 0.02562 * 22 21 20 25 25 C 1.46846 * 111.19997 * 61.74591 * 17 16 15 26 26 C 1.53040 * 109.51964 * 298.25655 * 25 17 16 27 27 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46941 * 59.99988 * 10 9 7 29 29 H 1.09000 * 109.46879 * 299.99473 * 10 9 7 30 30 H 0.97004 * 119.99947 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.58180 * 34.83739 * 14 13 11 32 32 H 1.08999 * 109.49853 * 57.61228 * 15 14 13 33 33 H 1.08996 * 109.49839 * 297.50259 * 15 14 13 34 34 H 1.09001 * 109.46314 * 180.80749 * 16 15 14 35 35 H 1.08997 * 109.46418 * 60.83870 * 16 15 14 36 36 H 1.08003 * 120.42070 * 359.97438 * 19 18 17 37 37 H 1.07993 * 120.73535 * 180.22148 * 20 19 18 38 38 H 1.08003 * 120.34234 * 179.77591 * 21 20 19 39 39 H 1.08996 * 109.46231 * 58.27402 * 25 17 16 40 40 H 1.09004 * 109.46418 * 178.24241 * 25 17 16 41 41 H 1.09004 * 109.50602 * 299.23671 * 26 25 17 42 42 H 1.08998 * 109.50366 * 179.12192 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3303 -7.7151 0.0008 15 6 3.3755 -8.6530 -0.6096 16 6 2.8584 -10.0921 -0.5511 17 7 2.5976 -10.4635 0.8454 18 6 2.2516 -11.8059 0.9477 19 6 1.9712 -12.3518 2.1956 20 6 1.6238 -13.6884 2.2841 21 6 1.5777 -14.4398 1.1184 22 6 1.8732 -13.8341 -0.0900 23 9 1.8306 -14.5601 -1.2285 24 7 2.1974 -12.5542 -0.1438 25 6 1.5627 -9.6068 1.4383 26 6 2.0411 -8.1531 1.4392 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 3.8009 -6.1835 -0.0003 31 1 1.4126 -7.7615 -0.5855 32 1 4.3055 -8.5772 -0.0462 33 1 3.5542 -8.3723 -1.6475 34 1 3.6064 -10.7641 -0.9719 35 1 1.9358 -10.1702 -1.1261 36 1 2.0212 -11.7398 3.0840 37 1 1.3975 -14.1377 3.2397 38 1 1.3136 -15.4864 1.1541 39 1 0.6461 -9.6871 0.8541 40 1 1.3696 -9.9262 2.4625 41 1 2.9502 -8.0694 2.0348 42 1 1.2665 -7.5153 1.8651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095405579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:36 Heat of formation + Delta-G solvation = -55.960530 kcal Electronic energy + Delta-G solvation = -25757.321889 eV Core-core repulsion = 21777.278039 eV Total energy + Delta-G solvation = -3980.043850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06550 -41.87356 -40.78694 -39.18421 -36.20651 -34.57826 -33.82213 -33.23881 -31.96752 -30.97871 -29.67728 -27.66203 -25.60841 -25.22255 -23.53906 -23.31813 -21.65529 -21.16497 -19.79151 -19.22046 -18.46034 -17.76877 -17.53535 -17.17274 -17.06182 -16.87186 -16.74006 -16.42762 -15.98982 -15.91022 -15.42527 -15.01150 -14.78841 -14.75144 -14.43641 -14.22428 -14.16888 -13.97258 -13.61310 -13.28971 -13.16311 -13.10107 -12.86268 -12.76410 -12.56513 -12.32395 -12.04953 -11.78045 -11.64906 -11.14543 -11.12298 -10.92109 -10.80144 -10.70338 -10.26908 -10.09181 -9.20879 -8.65747 -8.33924 -6.11872 -0.09258 0.15100 1.27531 1.44295 1.47379 1.57092 1.62588 2.12839 2.25045 2.29710 2.55067 2.79363 3.00098 3.32435 3.54368 3.58953 3.77489 3.90275 3.93940 4.02357 4.07581 4.13883 4.17278 4.24978 4.32736 4.41371 4.50787 4.53991 4.58659 4.71305 4.72993 4.81492 4.93906 4.96534 5.09193 5.13762 5.19195 5.42302 5.44387 5.50009 5.55868 6.00617 6.20259 6.53400 6.64295 7.07320 7.26755 8.74949 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.038816 B = 0.001755 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.184774 B =15948.297939 C =16110.446266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.707 5.707 14 C 0.143 3.857 15 C -0.113 4.113 16 C 0.075 3.925 17 N -0.471 5.471 18 C 0.328 3.672 19 C -0.193 4.193 20 C -0.017 4.017 21 C -0.215 4.215 22 C 0.301 3.699 23 F -0.126 7.126 24 N -0.584 5.584 25 C 0.068 3.932 26 C -0.122 4.122 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.417 0.583 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.168 0.832 37 H 0.189 0.811 38 H 0.171 0.829 39 H 0.037 0.963 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 -29.670 6.192 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.038 3.962 15 C -0.151 4.151 16 C -0.053 4.053 17 N -0.188 5.188 18 C 0.096 3.904 19 C -0.215 4.215 20 C -0.042 4.042 21 C -0.237 4.237 22 C 0.148 3.852 23 F -0.105 7.105 24 N -0.305 5.305 25 C -0.058 4.058 26 C -0.161 4.161 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.255 0.745 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.186 0.814 37 H 0.206 0.794 38 H 0.189 0.811 39 H 0.056 0.944 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.144 -29.422 5.592 31.036 hybrid contribution 1.032 0.827 -0.413 1.385 sum 9.175 -28.594 5.179 30.474 Atomic orbital electron populations 1.70177 1.07961 1.28646 1.47982 1.26128 0.95967 1.03323 0.93768 0.85012 0.77806 0.75730 0.79499 1.18727 1.20450 1.18587 1.23179 0.95364 0.92040 1.58893 0.89883 1.85568 1.10614 0.99218 1.97055 1.23379 1.03519 0.94391 1.06817 1.20056 0.86270 0.86633 0.74861 1.90691 1.17400 1.86043 1.50114 1.45774 1.10302 1.04553 1.75399 1.21044 0.97739 0.80523 0.96932 1.21863 0.98715 0.91954 1.02614 1.21851 1.01000 0.96080 0.86322 1.59273 1.40253 0.99408 1.19880 1.19746 0.91572 0.90302 0.88754 1.21985 1.04685 0.97527 0.97350 1.21840 0.90777 0.92023 0.99545 1.22041 1.06982 1.03907 0.90742 1.18254 0.97742 0.86512 0.82675 1.91598 1.93604 1.74953 1.50386 1.66682 1.21716 1.07336 1.34750 1.22265 0.90591 0.91578 1.01339 1.21943 1.03013 0.94294 0.96804 0.92020 0.87089 0.87312 0.74542 0.92256 0.88464 0.89407 0.89321 0.94505 0.81413 0.79425 0.81114 0.94432 0.86872 0.88875 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.55 -31.06 9.50 67.95 0.65 -30.41 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 19.13 7.82 87.66 0.69 19.81 16 12 O -0.56 -25.56 15.52 -3.04 -0.05 -25.60 16 13 N -0.71 -16.86 5.08 -442.15 -2.25 -19.11 16 14 C 0.14 3.10 2.52 45.07 0.11 3.22 16 15 C -0.11 -1.80 5.57 30.65 0.17 -1.63 16 16 C 0.07 1.38 4.65 86.32 0.40 1.78 16 17 N -0.47 -8.05 4.68 -702.02 -3.28 -11.34 16 18 C 0.33 5.79 6.40 133.03 0.85 6.64 16 19 C -0.19 -2.13 9.18 22.50 0.21 -1.92 16 20 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 21 C -0.21 -2.35 10.08 22.43 0.23 -2.13 16 22 C 0.30 5.66 8.40 84.68 0.71 6.37 16 23 F -0.13 -2.62 17.29 44.97 0.78 -1.84 16 24 N -0.58 -12.60 8.69 -194.33 -1.69 -14.29 16 25 C 0.07 1.12 5.25 86.33 0.45 1.57 16 26 C -0.12 -2.35 5.67 30.65 0.17 -2.18 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.82 8.14 -2.40 -0.02 3.81 16 29 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 30 H 0.42 7.00 8.61 -92.71 -0.80 6.20 16 31 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.70 7.70 -2.39 -0.02 1.68 16 35 H 0.04 0.80 8.11 -2.39 -0.02 0.79 16 36 H 0.17 1.06 7.16 -2.91 -0.02 1.04 16 37 H 0.19 -0.13 8.06 -2.91 -0.02 -0.16 16 38 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.11 1.31 6.68 -2.38 -0.02 1.29 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -79.84 367.84 0.69 -79.15 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.25 Total: 14.94 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.77 Total: -2.15 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -6.93 Total: -100.36 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -79.84 0.69 -79.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095405579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.188 kcal (2) G-P(sol) polarization free energy of solvation -79.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds