Wall clock time and date at job start Tue Mar 31 2020 22:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99961 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.50114 * 34.92229 * 14 13 11 16 16 C 1.53120 * 109.50241 * 274.80585 * 14 13 11 17 17 C 1.53119 * 109.15742 * 182.40432 * 16 14 13 18 18 C 1.53042 * 109.28191 * 57.65297 * 17 16 14 19 19 N 1.46846 * 109.52121 * 300.81832 * 18 17 16 20 20 C 1.38989 * 110.99718 * 185.83485 * 19 18 17 21 21 C 1.39074 * 119.69045 * 55.79586 * 20 19 18 22 22 C 1.38377 * 119.16087 * 179.97438 * 21 20 19 23 23 C 1.38761 * 118.52990 * 0.02562 * 22 21 20 24 24 C 1.38361 * 119.31023 * 359.97438 * 23 22 21 25 25 F 1.35101 * 119.60745 * 180.02562 * 24 23 22 26 26 N 1.32144 * 120.79282 * 359.74876 * 24 23 22 27 27 C 1.46850 * 111.19761 * 61.74078 * 19 18 17 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 30 30 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 31 31 H 0.97002 * 120.00354 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.52062 * 302.30252 * 16 14 13 33 33 H 1.08997 * 109.52374 * 62.49910 * 16 14 13 34 34 H 1.08997 * 109.50475 * 297.70970 * 17 16 14 35 35 H 1.09001 * 109.50061 * 177.59030 * 17 16 14 36 36 H 1.09000 * 109.46328 * 180.80306 * 18 17 16 37 37 H 1.09007 * 109.45145 * 60.82862 * 18 17 16 38 38 H 1.08005 * 120.41534 * 359.97438 * 21 20 19 39 39 H 1.07989 * 120.73275 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.34139 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46491 * 178.23896 * 27 19 18 42 42 H 1.09007 * 109.45169 * 58.26986 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 7.4907 -4.7359 -0.0011 15 1 7.9885 -3.9644 0.5864 16 6 8.0141 -4.7016 -1.4396 17 6 9.5131 -5.0137 -1.4365 18 6 9.7437 -6.3790 -0.7845 19 7 9.2266 -6.3602 0.5897 20 6 9.5363 -7.5407 1.2546 21 6 10.8614 -7.9531 1.3451 22 6 11.1574 -9.1300 2.0101 23 6 10.1144 -9.8585 2.5641 24 6 8.8187 -9.3903 2.4370 25 9 7.7987 -10.0945 2.9746 26 7 8.5673 -8.2597 1.8008 27 6 7.7798 -6.1091 0.6093 28 1 -0.4850 0.8401 0.0004 29 1 3.6440 -3.4315 0.8904 30 1 3.6433 -3.4318 -0.8896 31 1 5.4290 -5.2436 0.0010 32 1 7.4882 -5.4467 -2.0364 33 1 7.8491 -3.7111 -1.8638 34 1 10.0434 -4.2468 -0.8720 35 1 9.8829 -5.0329 -2.4617 36 1 10.8113 -6.5979 -0.7679 37 1 9.2243 -7.1472 -1.3576 38 1 11.6494 -7.3622 0.9020 39 1 12.1774 -9.4743 2.0952 40 1 10.3122 -10.7810 3.0898 41 1 7.4211 -6.1321 1.6383 42 1 7.2700 -6.8788 0.0297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096168223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:45 Heat of formation + Delta-G solvation = -30.536726 kcal Electronic energy + Delta-G solvation = -26051.403303 eV Core-core repulsion = 22072.461912 eV Total energy + Delta-G solvation = -3978.941391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.38546 -41.27048 -39.67572 -38.31216 -35.01948 -33.57508 -32.73125 -32.42574 -30.78187 -29.98113 -28.37930 -25.60638 -25.46277 -24.35746 -22.85215 -22.61307 -20.44585 -20.35586 -18.59647 -17.94375 -17.66985 -16.69138 -16.56603 -16.48287 -16.40567 -15.61610 -15.22452 -15.11774 -14.96545 -14.82114 -14.55723 -14.10290 -13.88854 -13.64219 -13.54521 -13.38577 -13.28200 -12.84728 -12.78574 -12.77003 -12.14898 -11.75037 -11.33424 -11.25238 -11.13523 -10.99655 -10.97857 -10.61425 -10.57065 -10.21758 -10.08887 -9.84758 -9.51156 -9.02458 -8.96866 -8.61821 -8.49066 -6.90579 -6.27761 -3.99377 0.45644 0.64612 2.58208 2.82255 2.97086 3.08388 3.19817 3.34168 3.49116 3.51519 3.73040 4.04833 4.31691 4.34267 4.42205 4.48140 4.53239 4.58644 4.69693 4.71254 4.76541 4.93722 5.10819 5.11332 5.17822 5.23963 5.27395 5.30253 5.39778 5.48773 5.56165 5.58690 5.74455 5.78079 5.92325 6.01990 6.02915 6.08187 6.15584 6.54875 6.60654 7.22857 7.60722 7.95338 8.43100 8.49238 9.18361 10.81461 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002145 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.910940 B =13047.697504 C =13983.884143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.732 5.732 14 C 0.148 3.852 15 H 0.098 0.902 16 C -0.136 4.136 17 C -0.115 4.115 18 C 0.057 3.943 19 N -0.468 5.468 20 C 0.354 3.646 21 C -0.199 4.199 22 C -0.025 4.025 23 C -0.226 4.226 24 C 0.336 3.664 25 F -0.112 7.112 26 N -0.552 5.552 27 C 0.060 3.940 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.095 0.905 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.406 -21.993 0.127 33.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.200 1.200 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.386 5.386 14 C 0.042 3.958 15 H 0.116 0.884 16 C -0.175 4.175 17 C -0.153 4.153 18 C -0.068 4.068 19 N -0.185 5.185 20 C 0.122 3.878 21 C -0.221 4.221 22 C -0.051 4.051 23 C -0.249 4.249 24 C 0.182 3.818 25 F -0.091 7.091 26 N -0.272 5.272 27 C -0.067 4.067 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.113 0.887 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.827 -19.604 0.279 32.426 hybrid contribution -1.000 -1.695 0.009 1.968 sum 24.827 -21.300 0.289 32.713 Atomic orbital electron populations 1.69943 1.05912 1.27745 1.48099 1.24724 0.94462 0.98980 0.93210 0.86727 0.81875 0.83263 0.79934 1.19209 1.15921 1.19968 1.22321 0.88294 0.97538 1.58727 0.89383 1.84770 1.09259 1.00038 1.97427 1.23285 0.93955 1.04385 1.05867 1.20263 0.90567 0.82180 0.74960 1.90697 1.58706 1.42107 1.47610 1.45919 1.06837 1.08225 1.77588 1.20859 0.81678 0.96814 0.96427 0.88427 1.22058 0.95237 1.03296 0.96906 1.21590 0.96837 0.95924 1.00976 1.22403 1.00770 0.98896 0.84712 1.58974 1.16373 1.26492 1.16674 1.19436 0.88894 0.86958 0.92552 1.21611 0.95954 0.99110 1.05469 1.21335 0.99572 0.92353 0.91804 1.21695 0.91383 1.04412 1.07401 1.17867 0.83554 0.87851 0.92491 1.91649 1.59412 1.75506 1.82488 1.66828 1.38059 1.06971 1.15388 1.22217 0.85093 0.96065 1.03339 0.91956 0.88444 0.88446 0.76653 0.91766 0.90235 0.90216 0.90174 0.89334 0.93126 0.83596 0.83424 0.83551 0.88692 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.72 13.97 55.49 0.78 -25.95 16 2 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.91 27.74 -169.99 -4.72 17.19 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.41 7.82 -10.99 -0.09 9.33 16 12 O -0.52 -10.97 15.52 5.56 0.09 -10.89 16 13 N -0.73 -9.40 5.08 -53.73 -0.27 -9.67 16 14 C 0.15 1.70 2.62 -67.85 -0.18 1.52 16 15 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 16 C -0.14 -1.37 5.58 -26.61 -0.15 -1.51 16 17 C -0.11 -0.85 6.09 -26.65 -0.16 -1.01 16 18 C 0.06 0.39 5.25 -3.83 -0.02 0.37 16 19 N -0.47 -4.22 4.68 -173.23 -0.81 -5.03 16 20 C 0.35 3.23 6.40 -155.02 -0.99 2.24 16 21 C -0.20 -1.25 9.18 -39.22 -0.36 -1.61 16 22 C -0.02 -0.12 10.16 -39.34 -0.40 -0.52 16 23 C -0.23 -1.45 10.08 -39.34 -0.40 -1.85 16 24 C 0.34 3.22 8.40 -17.37 -0.15 3.07 16 25 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 26 N -0.55 -5.95 8.69 -12.78 -0.11 -6.06 16 27 C 0.06 0.61 4.12 -3.83 -0.02 0.59 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.40 4.13 8.60 -40.82 -0.35 3.77 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.41 6.67 -51.93 -0.35 0.07 16 37 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.15 0.61 7.14 -52.48 -0.37 0.24 16 39 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.09 1.11 7.70 -51.93 -0.40 0.71 16 42 H 0.06 0.57 8.12 -51.93 -0.42 0.14 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -34.95 365.12 -9.64 -44.58 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.67 Total: 0.70 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.47 Total: -3.67 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.42 Total: -46.71 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.19 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.95 -9.64 -44.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096168223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.047 kcal (2) G-P(sol) polarization free energy of solvation -34.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds