Wall clock time and date at job start Tue Mar 31 2020 22:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99961 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.50114 * 34.92229 * 14 13 11 16 16 C 1.53120 * 109.50241 * 274.80585 * 14 13 11 17 17 C 1.53119 * 109.15742 * 182.40432 * 16 14 13 18 18 C 1.53042 * 109.28191 * 57.65297 * 17 16 14 19 19 N 1.46846 * 109.52121 * 300.81832 * 18 17 16 20 20 C 1.38989 * 110.99718 * 185.83485 * 19 18 17 21 21 C 1.39074 * 119.69045 * 55.79586 * 20 19 18 22 22 C 1.38377 * 119.16087 * 179.97438 * 21 20 19 23 23 C 1.38761 * 118.52990 * 0.02562 * 22 21 20 24 24 C 1.38361 * 119.31023 * 359.97438 * 23 22 21 25 25 F 1.35101 * 119.60745 * 180.02562 * 24 23 22 26 26 N 1.32144 * 120.79282 * 359.74876 * 24 23 22 27 27 C 1.46850 * 111.19761 * 61.74078 * 19 18 17 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 30 30 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 31 31 H 0.97002 * 120.00354 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.52062 * 302.30252 * 16 14 13 33 33 H 1.08997 * 109.52374 * 62.49910 * 16 14 13 34 34 H 1.08997 * 109.50475 * 297.70970 * 17 16 14 35 35 H 1.09001 * 109.50061 * 177.59030 * 17 16 14 36 36 H 1.09000 * 109.46328 * 180.80306 * 18 17 16 37 37 H 1.09007 * 109.45145 * 60.82862 * 18 17 16 38 38 H 1.08005 * 120.41534 * 359.97438 * 21 20 19 39 39 H 1.07989 * 120.73275 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.34139 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.46491 * 178.23896 * 27 19 18 42 42 H 1.09007 * 109.45169 * 58.26986 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 7.4907 -4.7359 -0.0011 15 1 7.9885 -3.9644 0.5864 16 6 8.0141 -4.7016 -1.4396 17 6 9.5131 -5.0137 -1.4365 18 6 9.7437 -6.3790 -0.7845 19 7 9.2266 -6.3602 0.5897 20 6 9.5363 -7.5407 1.2546 21 6 10.8614 -7.9531 1.3451 22 6 11.1574 -9.1300 2.0101 23 6 10.1144 -9.8585 2.5641 24 6 8.8187 -9.3903 2.4370 25 9 7.7987 -10.0945 2.9746 26 7 8.5673 -8.2597 1.8008 27 6 7.7798 -6.1091 0.6093 28 1 -0.4850 0.8401 0.0004 29 1 3.6440 -3.4315 0.8904 30 1 3.6433 -3.4318 -0.8896 31 1 5.4290 -5.2436 0.0010 32 1 7.4882 -5.4467 -2.0364 33 1 7.8491 -3.7111 -1.8638 34 1 10.0434 -4.2468 -0.8720 35 1 9.8829 -5.0329 -2.4617 36 1 10.8113 -6.5979 -0.7679 37 1 9.2243 -7.1472 -1.3576 38 1 11.6494 -7.3622 0.9020 39 1 12.1774 -9.4743 2.0952 40 1 10.3122 -10.7810 3.0898 41 1 7.4211 -6.1321 1.6383 42 1 7.2700 -6.8788 0.0297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096168223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:44 Heat of formation + Delta-G solvation = -54.875151 kcal Electronic energy + Delta-G solvation = -26052.458697 eV Core-core repulsion = 22072.461912 eV Total energy + Delta-G solvation = -3979.996785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05936 -41.91837 -40.82579 -39.21130 -36.05128 -34.68301 -34.28063 -33.41916 -31.86653 -30.72129 -29.54245 -27.85907 -26.12692 -25.02194 -23.47256 -23.36252 -21.75642 -21.16303 -19.88399 -19.22928 -18.44651 -17.87349 -17.47080 -17.20963 -17.10316 -17.08917 -16.59059 -16.43075 -15.94930 -15.75436 -15.47984 -15.23453 -14.97572 -14.91103 -14.71061 -14.35962 -14.12582 -13.98137 -13.64961 -13.55383 -13.35308 -13.20855 -13.02366 -12.67013 -12.52438 -12.03701 -11.95345 -11.87911 -11.74999 -11.18131 -11.13868 -11.03271 -10.78537 -10.70624 -10.55542 -10.18155 -9.20036 -9.00855 -8.52473 -6.23461 -0.08439 0.16332 0.96370 1.30984 1.44975 1.51947 1.53851 1.97065 2.23956 2.30607 2.53896 2.68074 2.85559 2.87719 3.54211 3.58229 3.69555 3.85822 3.89960 3.96147 4.06859 4.13655 4.18111 4.20490 4.22277 4.44536 4.46646 4.55632 4.59860 4.72476 4.73589 4.81402 4.93649 5.03137 5.12998 5.17034 5.24582 5.35973 5.47565 5.57672 5.69724 5.99374 6.10437 6.40522 6.65037 6.92391 7.14376 8.59964 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002145 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.910940 B =13047.697504 C =13983.884143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.236 1.236 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.171 6.171 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.557 6.557 13 N -0.711 5.711 14 C 0.150 3.850 15 H 0.073 0.927 16 C -0.132 4.132 17 C -0.108 4.108 18 C 0.058 3.942 19 N -0.476 5.476 20 C 0.330 3.670 21 C -0.190 4.190 22 C -0.015 4.015 23 C -0.215 4.215 24 C 0.301 3.699 25 F -0.128 7.128 26 N -0.586 5.586 27 C 0.075 3.925 28 H 0.277 0.723 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.414 0.586 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.173 0.827 39 H 0.190 0.810 40 H 0.170 0.830 41 H 0.074 0.926 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.772 -23.460 -0.349 37.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.160 1.160 6 H -0.182 1.182 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.055 5.945 10 C -0.263 4.263 11 C 0.326 3.674 12 O -0.434 6.434 13 N -0.364 5.364 14 C 0.045 3.955 15 H 0.091 0.909 16 C -0.171 4.171 17 C -0.147 4.147 18 C -0.066 4.066 19 N -0.193 5.193 20 C 0.098 3.902 21 C -0.212 4.212 22 C -0.040 4.040 23 C -0.237 4.237 24 C 0.148 3.852 25 F -0.107 7.107 26 N -0.308 5.308 27 C -0.053 4.053 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.251 0.749 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.190 0.810 39 H 0.207 0.793 40 H 0.188 0.812 41 H 0.093 0.907 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 29.195 -21.135 -0.196 36.042 hybrid contribution -1.978 -1.437 0.185 2.452 sum 27.216 -22.572 -0.011 35.358 Atomic orbital electron populations 1.70021 1.07315 1.29043 1.49099 1.25595 0.95317 1.02344 0.92881 0.85846 0.80690 0.79486 0.80218 1.18740 1.15966 1.18237 1.22465 0.90305 0.96688 1.58311 0.92054 1.84665 1.06353 1.05899 1.97581 1.23275 0.95801 0.99821 1.07416 1.19897 0.89374 0.83157 0.74988 1.90686 1.59181 1.43593 1.49968 1.45719 1.08153 1.07055 1.75464 1.20927 0.80067 0.96946 0.97533 0.90888 1.22008 0.97600 1.02204 0.95300 1.21573 0.94434 0.96266 1.02388 1.22513 1.02418 0.98224 0.83467 1.59061 1.15059 1.27159 1.18042 1.19712 0.89918 0.87177 0.93398 1.21967 0.95120 0.99499 1.04649 1.21845 1.00997 0.91227 0.89962 1.22043 0.90223 1.05046 1.06415 1.18271 0.84509 0.88298 0.94157 1.91601 1.60321 1.75822 1.82956 1.66662 1.39688 1.07972 1.16433 1.21921 0.86688 0.94810 1.01853 0.91350 0.87079 0.86749 0.74916 0.90677 0.92752 0.90904 0.87918 0.86490 0.92853 0.81005 0.79253 0.81222 0.90705 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.44 13.97 21.65 0.30 -56.14 16 2 C 0.04 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.92 45.48 27.74 68.60 1.90 47.38 16 4 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -31.29 10.04 67.96 0.68 -30.61 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 9 S -0.17 -8.78 18.55 -56.49 -1.05 -9.83 16 10 C -0.11 -4.32 6.16 71.24 0.44 -3.88 16 11 C 0.54 19.00 7.82 87.66 0.69 19.69 16 12 O -0.56 -23.93 15.52 -3.03 -0.05 -23.98 16 13 N -0.71 -18.01 5.08 -442.28 -2.25 -20.25 16 14 C 0.15 3.44 2.62 45.04 0.12 3.56 16 15 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 16 C -0.13 -2.54 5.58 30.67 0.17 -2.37 16 17 C -0.11 -1.38 6.09 30.65 0.19 -1.19 16 18 C 0.06 0.63 5.25 86.33 0.45 1.08 16 19 N -0.48 -7.92 4.68 -701.99 -3.28 -11.20 16 20 C 0.33 5.49 6.40 133.04 0.85 6.34 16 21 C -0.19 -1.75 9.18 22.50 0.21 -1.54 16 22 C -0.02 -0.09 10.16 22.43 0.23 0.14 16 23 C -0.22 -2.21 10.08 22.42 0.23 -1.99 16 24 C 0.30 5.60 8.40 84.68 0.71 6.31 16 25 F -0.13 -2.72 17.29 44.97 0.78 -1.95 16 26 N -0.59 -12.48 8.69 -194.34 -1.69 -14.17 16 27 C 0.08 1.50 4.12 86.32 0.36 1.86 16 28 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 31 H 0.41 8.18 8.60 -92.71 -0.80 7.38 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.61 6.67 -2.39 -0.02 0.60 16 37 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.17 0.62 7.14 -2.91 -0.02 0.60 16 39 H 0.19 -0.46 8.06 -2.92 -0.02 -0.49 16 40 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.07 1.80 7.70 -2.39 -0.02 1.78 16 42 H 0.06 1.15 8.12 -2.38 -0.02 1.13 16 Total: -1.00 -78.95 365.12 0.67 -78.29 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.22 Total: 11.37 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.78 Total: 0.47 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.92 Total: -101.76 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.05 Total: -9.83 kcal Total: -78.95 0.67 -78.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096168223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.411 kcal (2) G-P(sol) polarization free energy of solvation -78.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds