Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99398 * 2 1 4 4 H 1.48503 * 109.46958 * 270.00021 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99610 * 3 2 1 6 6 H 1.48495 * 109.47067 * 149.99936 * 3 2 1 7 7 C 1.38794 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99771 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47069 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00042 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00053 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.53307 * 324.90609 * 14 13 11 16 16 C 1.53120 * 109.50132 * 85.00212 * 14 13 11 17 17 C 1.53123 * 109.21163 * 177.62814 * 16 14 13 18 18 C 1.53037 * 109.27398 * 302.31409 * 17 16 14 19 19 N 1.46848 * 109.52381 * 59.18254 * 18 17 16 20 20 C 1.38999 * 110.99853 * 174.15739 * 19 18 17 21 21 C 1.39072 * 119.68708 * 55.76822 * 20 19 18 22 22 C 1.38378 * 119.15289 * 179.79320 * 21 20 19 23 23 C 1.38757 * 118.53613 * 0.47412 * 22 21 20 24 24 C 1.38369 * 119.30630 * 359.75317 * 23 22 21 25 25 F 1.35099 * 119.60789 * 180.02562 * 24 23 22 26 26 N 1.32140 * 120.79229 * 0.02562 * 24 23 22 27 27 C 1.46845 * 111.19518 * 298.25146 * 19 18 17 28 28 H 0.96992 * 120.00970 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47326 * 59.99726 * 10 9 7 30 30 H 1.09000 * 109.47317 * 300.00110 * 10 9 7 31 31 H 0.96999 * 120.00057 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.52427 * 57.69088 * 16 14 13 33 33 H 1.08995 * 109.52208 * 297.56407 * 16 14 13 34 34 H 1.08996 * 109.50077 * 62.25431 * 17 16 14 35 35 H 1.08993 * 109.50100 * 182.33643 * 17 16 14 36 36 H 1.09006 * 109.45986 * 179.19524 * 18 17 16 37 37 H 1.08996 * 109.46288 * 299.15727 * 18 17 16 38 38 H 1.08002 * 120.42475 * 0.02562 * 21 20 19 39 39 H 1.08006 * 120.73244 * 180.22163 * 22 21 20 40 40 H 1.08002 * 120.34809 * 179.76455 * 23 22 21 41 41 H 1.09003 * 109.45905 * 181.76430 * 27 19 18 42 42 H 1.09002 * 109.46112 * 301.72627 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0868 -2.9842 0.0009 11 6 5.5733 -3.2321 0.0008 12 8 6.3442 -2.2958 0.0014 13 7 6.0460 -4.4943 0.0011 14 6 7.4911 -4.7352 0.0016 15 1 7.9890 -3.9662 -0.5889 16 6 8.0156 -4.6951 1.4396 17 6 9.5149 -5.0062 1.4380 18 6 9.7462 -6.3743 0.7924 19 7 9.2292 -6.3621 -0.5820 20 6 9.5398 -7.5455 -1.2416 21 6 9.1515 -8.7626 -0.6921 22 6 9.4627 -9.9338 -1.3602 23 6 10.1631 -9.8492 -2.5550 24 6 10.5228 -8.6053 -3.0427 25 9 11.2044 -8.5159 -4.2057 26 7 10.2077 -7.5037 -2.3845 27 6 7.7823 -6.1122 -0.6027 28 1 -0.4851 0.8399 -0.0004 29 1 3.6442 -3.4312 -0.8893 30 1 3.6436 -3.4315 0.8906 31 1 5.4295 -5.2431 0.0011 32 1 7.4901 -5.4378 2.0399 33 1 7.8498 -3.7033 1.8602 34 1 10.0445 -4.2414 0.8700 35 1 9.8847 -5.0197 2.4632 36 1 10.8141 -6.5925 0.7767 37 1 9.2276 -7.1403 1.3688 38 1 8.6107 -8.7932 0.2423 39 1 9.1705 -10.8928 -0.9584 40 1 10.4247 -10.7450 -3.0988 41 1 7.4236 -6.1402 -1.6317 42 1 7.2728 -6.8795 -0.0198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096168228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = -26.982386 kcal Electronic energy + Delta-G solvation = -25957.515334 eV Core-core repulsion = 21978.728070 eV Total energy + Delta-G solvation = -3978.787264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.43162 -41.27016 -39.72205 -38.35347 -35.02041 -33.42575 -32.96919 -32.44161 -30.74469 -29.94048 -28.40143 -25.61884 -25.49452 -24.03442 -23.24008 -22.83182 -20.47777 -20.29814 -18.52654 -17.98548 -17.74124 -16.78331 -16.63448 -16.54670 -16.42290 -15.69074 -15.34574 -15.11527 -14.96136 -14.84252 -14.41958 -14.04450 -13.90447 -13.79746 -13.61623 -13.38742 -13.22992 -12.90235 -12.84999 -12.79156 -12.18641 -11.72627 -11.31705 -11.25140 -11.14942 -11.00651 -10.92596 -10.60934 -10.56297 -10.44710 -9.85981 -9.55710 -9.43568 -9.06296 -8.99663 -8.94585 -8.50444 -6.92111 -6.29226 -4.01032 0.26556 0.55819 2.43859 2.79353 2.94510 2.96396 3.27522 3.33939 3.50554 3.52073 3.70023 4.07486 4.18106 4.31855 4.33358 4.37818 4.47369 4.55625 4.64930 4.74033 4.75197 4.87446 5.00701 5.08283 5.09876 5.19171 5.22160 5.31444 5.38700 5.42118 5.44195 5.57364 5.75195 5.79050 5.86680 5.99590 6.02380 6.09796 6.30055 6.52703 6.57560 7.29220 7.56895 7.93752 8.41046 8.47039 9.16976 10.79960 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.002036 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.365049 B =13746.121307 C =14112.369240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.734 5.734 14 C 0.152 3.848 15 H 0.101 0.899 16 C -0.134 4.134 17 C -0.114 4.114 18 C 0.064 3.936 19 N -0.497 5.497 20 C 0.351 3.649 21 C -0.210 4.210 22 C -0.036 4.036 23 C -0.200 4.200 24 C 0.322 3.678 25 F -0.109 7.109 26 N -0.496 5.496 27 C 0.063 3.937 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.398 0.602 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.045 0.955 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.844 -24.473 1.082 32.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.388 5.388 14 C 0.046 3.954 15 H 0.119 0.881 16 C -0.173 4.173 17 C -0.152 4.152 18 C -0.062 4.062 19 N -0.220 5.220 20 C 0.121 3.879 21 C -0.234 4.234 22 C -0.062 4.062 23 C -0.222 4.222 24 C 0.167 3.833 25 F -0.088 7.088 26 N -0.211 5.211 27 C -0.064 4.064 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.168 0.832 41 H 0.104 0.896 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.462 -21.581 0.434 31.152 hybrid contribution -1.588 -2.110 0.363 2.665 sum 20.875 -23.690 0.797 31.585 Atomic orbital electron populations 1.69933 1.05916 1.27784 1.48074 1.24717 0.94459 0.98990 0.93179 0.86732 0.81884 0.83255 0.79967 1.19190 1.19956 1.15902 1.22315 0.88291 0.97519 1.58783 0.89400 1.84810 1.09242 0.99964 1.97421 1.23281 0.93929 1.04466 1.05804 1.20265 0.90561 0.82184 0.75017 1.90710 1.58693 1.42066 1.47351 1.45930 1.06816 1.08200 1.77804 1.20815 0.81443 0.96483 0.96639 0.88098 1.22030 0.95344 1.03254 0.96628 1.21561 0.96602 0.96240 1.00802 1.22258 1.00318 0.98408 0.85234 1.58283 1.14760 1.31902 1.17049 1.18988 0.91512 0.88592 0.88843 1.22640 1.04026 0.93575 1.03115 1.21397 0.93051 0.99188 0.92547 1.21882 1.03537 0.97617 0.99118 1.17904 0.92602 0.89293 0.83455 1.91661 1.76369 1.96831 1.43967 1.66496 1.13764 1.31798 1.09088 1.22342 0.84922 0.96871 1.02248 0.91937 0.88500 0.88455 0.76834 0.91852 0.90293 0.90237 0.90416 0.90141 0.93687 0.83940 0.83414 0.83193 0.89604 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.11 16 11 C 0.53 9.13 7.81 -10.99 -0.09 9.04 16 12 O -0.51 -10.82 15.53 5.56 0.09 -10.73 16 13 N -0.73 -8.76 5.08 -53.66 -0.27 -9.04 16 14 C 0.15 1.66 2.62 -67.78 -0.18 1.49 16 15 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 16 C -0.13 -1.30 5.57 -26.61 -0.15 -1.45 16 17 C -0.11 -0.90 6.09 -26.65 -0.16 -1.07 16 18 C 0.06 0.46 5.04 -3.83 -0.02 0.44 16 19 N -0.50 -4.64 4.70 -173.16 -0.81 -5.45 16 20 C 0.35 3.24 5.68 -155.01 -0.88 2.36 16 21 C -0.21 -1.28 8.73 -39.22 -0.34 -1.62 16 22 C -0.04 -0.17 10.16 -39.34 -0.40 -0.57 16 23 C -0.20 -1.19 10.08 -39.34 -0.40 -1.59 16 24 C 0.32 3.03 8.40 -17.37 -0.15 2.89 16 25 F -0.11 -1.10 17.29 2.25 0.04 -1.06 16 26 N -0.50 -5.66 10.41 -12.78 -0.13 -5.80 16 27 C 0.06 0.55 4.69 -3.77 -0.02 0.54 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.40 3.54 8.61 -40.82 -0.35 3.19 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.04 0.25 7.10 -51.93 -0.37 -0.12 16 38 H 0.14 0.59 7.10 -52.49 -0.37 0.21 16 39 H 0.15 0.23 8.06 -52.48 -0.42 -0.20 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.05 0.32 7.76 -51.93 -0.40 -0.08 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -35.33 366.46 -9.54 -44.87 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.69 Total: -0.53 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.34 Total: -3.58 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.45 Total: -46.01 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.33 -9.54 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096168228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.888 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds