Wall clock time and date at job start Tue Mar 31 2020 22:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99398 * 2 1 4 4 H 1.48503 * 109.46958 * 270.00021 * 3 2 1 5 5 H 1.48496 * 109.47240 * 29.99610 * 3 2 1 6 6 H 1.48495 * 109.47067 * 149.99936 * 3 2 1 7 7 C 1.38794 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99771 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47069 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99879 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00042 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00053 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.53307 * 324.90609 * 14 13 11 16 16 C 1.53120 * 109.50132 * 85.00212 * 14 13 11 17 17 C 1.53123 * 109.21163 * 177.62814 * 16 14 13 18 18 C 1.53037 * 109.27398 * 302.31409 * 17 16 14 19 19 N 1.46848 * 109.52381 * 59.18254 * 18 17 16 20 20 C 1.38999 * 110.99853 * 174.15739 * 19 18 17 21 21 C 1.39072 * 119.68708 * 55.76822 * 20 19 18 22 22 C 1.38378 * 119.15289 * 179.79320 * 21 20 19 23 23 C 1.38757 * 118.53613 * 0.47412 * 22 21 20 24 24 C 1.38369 * 119.30630 * 359.75317 * 23 22 21 25 25 F 1.35099 * 119.60789 * 180.02562 * 24 23 22 26 26 N 1.32140 * 120.79229 * 0.02562 * 24 23 22 27 27 C 1.46845 * 111.19518 * 298.25146 * 19 18 17 28 28 H 0.96992 * 120.00970 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47326 * 59.99726 * 10 9 7 30 30 H 1.09000 * 109.47317 * 300.00110 * 10 9 7 31 31 H 0.96999 * 120.00057 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.52427 * 57.69088 * 16 14 13 33 33 H 1.08995 * 109.52208 * 297.56407 * 16 14 13 34 34 H 1.08996 * 109.50077 * 62.25431 * 17 16 14 35 35 H 1.08993 * 109.50100 * 182.33643 * 17 16 14 36 36 H 1.09006 * 109.45986 * 179.19524 * 18 17 16 37 37 H 1.08996 * 109.46288 * 299.15727 * 18 17 16 38 38 H 1.08002 * 120.42475 * 0.02562 * 21 20 19 39 39 H 1.08006 * 120.73244 * 180.22163 * 22 21 20 40 40 H 1.08002 * 120.34809 * 179.76455 * 23 22 21 41 41 H 1.09003 * 109.45905 * 181.76430 * 27 19 18 42 42 H 1.09002 * 109.46112 * 301.72627 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0868 -2.9842 0.0009 11 6 5.5733 -3.2321 0.0008 12 8 6.3442 -2.2958 0.0014 13 7 6.0460 -4.4943 0.0011 14 6 7.4911 -4.7352 0.0016 15 1 7.9890 -3.9662 -0.5889 16 6 8.0156 -4.6951 1.4396 17 6 9.5149 -5.0062 1.4380 18 6 9.7462 -6.3743 0.7924 19 7 9.2292 -6.3621 -0.5820 20 6 9.5398 -7.5455 -1.2416 21 6 9.1515 -8.7626 -0.6921 22 6 9.4627 -9.9338 -1.3602 23 6 10.1631 -9.8492 -2.5550 24 6 10.5228 -8.6053 -3.0427 25 9 11.2044 -8.5159 -4.2057 26 7 10.2077 -7.5037 -2.3845 27 6 7.7823 -6.1122 -0.6027 28 1 -0.4851 0.8399 -0.0004 29 1 3.6442 -3.4312 -0.8893 30 1 3.6436 -3.4315 0.8906 31 1 5.4295 -5.2431 0.0011 32 1 7.4901 -5.4378 2.0399 33 1 7.8498 -3.7033 1.8602 34 1 10.0445 -4.2414 0.8700 35 1 9.8847 -5.0197 2.4632 36 1 10.8141 -6.5925 0.7767 37 1 9.2276 -7.1403 1.3688 38 1 8.6107 -8.7932 0.2423 39 1 9.1705 -10.8928 -0.9584 40 1 10.4247 -10.7450 -3.0988 41 1 7.4236 -6.1402 -1.6317 42 1 7.2728 -6.8795 -0.0198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096168228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:47 Heat of formation + Delta-G solvation = -52.573208 kcal Electronic energy + Delta-G solvation = -25958.625035 eV Core-core repulsion = 21978.728070 eV Total energy + Delta-G solvation = -3979.896965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07990 -41.88041 -40.81430 -39.23732 -36.01959 -34.67008 -34.13854 -33.58531 -31.85186 -30.56784 -29.54007 -27.84136 -26.11477 -24.55208 -24.02104 -23.48302 -21.73821 -21.06619 -19.87223 -19.12830 -18.47205 -17.93127 -17.42058 -17.17427 -17.16011 -17.09288 -16.65816 -16.43799 -16.02749 -15.79246 -15.37458 -15.04560 -14.95537 -14.88275 -14.69360 -14.40775 -14.17098 -13.94090 -13.61790 -13.53727 -13.34184 -13.26801 -13.02151 -12.65952 -12.48163 -12.04237 -11.91329 -11.85698 -11.71017 -11.17205 -11.07766 -11.05350 -10.94525 -10.52523 -10.15871 -9.97050 -9.52545 -8.99213 -8.51475 -6.21912 -0.23726 0.10295 0.98410 1.31348 1.46032 1.53414 1.56742 1.88730 2.24421 2.31505 2.46801 2.72141 2.86797 2.99948 3.53284 3.67242 3.75114 3.78621 3.88805 3.94399 4.06183 4.07253 4.13711 4.20838 4.25263 4.46155 4.47723 4.54133 4.58116 4.64563 4.79482 4.82304 4.92642 5.01464 5.06034 5.21553 5.28276 5.35272 5.47352 5.71037 5.80784 5.97969 6.11784 6.46472 6.75864 6.93995 7.20418 8.60775 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.002036 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.365049 B =13746.121307 C =14112.369240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.707 5.707 14 C 0.152 3.848 15 H 0.062 0.938 16 C -0.127 4.127 17 C -0.109 4.109 18 C 0.068 3.932 19 N -0.522 5.522 20 C 0.328 3.672 21 C -0.198 4.198 22 C -0.025 4.025 23 C -0.187 4.187 24 C 0.289 3.711 25 F -0.126 7.126 26 N -0.546 5.546 27 C 0.075 3.925 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.418 0.582 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.171 0.829 39 H 0.191 0.809 40 H 0.177 0.823 41 H 0.072 0.928 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.438 -27.708 2.503 35.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.324 3.676 12 O -0.438 6.438 13 N -0.361 5.361 14 C 0.047 3.953 15 H 0.080 0.920 16 C -0.166 4.166 17 C -0.147 4.147 18 C -0.057 4.057 19 N -0.246 5.246 20 C 0.099 3.901 21 C -0.221 4.221 22 C -0.051 4.051 23 C -0.208 4.208 24 C 0.135 3.865 25 F -0.106 7.106 26 N -0.263 5.263 27 C -0.052 4.052 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.255 0.745 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.189 0.811 39 H 0.208 0.792 40 H 0.194 0.806 41 H 0.090 0.910 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.053 -24.876 1.859 33.967 hybrid contribution -1.721 -1.284 -0.095 2.149 sum 21.332 -26.161 1.763 33.802 Atomic orbital electron populations 1.70007 1.07232 1.28994 1.49212 1.25549 0.95275 1.02208 0.92989 0.85883 0.80711 0.79749 0.80129 1.18899 1.18316 1.16085 1.22455 0.90193 0.96699 1.58090 0.91777 1.84777 1.06479 1.06385 1.97586 1.23265 0.95686 0.99502 1.07616 1.19950 0.89393 0.83291 0.74998 1.90704 1.59319 1.43836 1.49933 1.45637 1.07942 1.06999 1.75496 1.20845 0.79940 0.97046 0.97453 0.91959 1.21957 0.96835 1.02344 0.95431 1.21530 0.95025 0.96372 1.01807 1.22271 1.00702 0.98255 0.84494 1.58091 1.14840 1.33332 1.18299 1.19129 0.92650 0.89542 0.88795 1.22901 1.02913 0.92543 1.03694 1.21915 0.91289 1.00488 0.91363 1.22225 1.02180 0.96889 0.99473 1.18305 0.94213 0.90364 0.83646 1.91610 1.77003 1.96972 1.44967 1.66300 1.15458 1.33761 1.10740 1.22175 0.85474 0.95827 1.01730 0.91384 0.86867 0.86426 0.74490 0.89275 0.93313 0.92681 0.88317 0.90158 0.90701 0.81121 0.79175 0.80568 0.90993 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 2 C 0.05 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 45.25 27.74 68.60 1.90 47.15 16 4 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 7 C -0.53 -30.51 10.04 67.95 0.68 -29.83 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 11 C 0.54 18.07 7.81 87.66 0.68 18.75 16 12 O -0.56 -23.98 15.53 -3.04 -0.05 -24.03 16 13 N -0.71 -15.72 5.08 -442.07 -2.25 -17.96 16 14 C 0.15 3.22 2.62 45.09 0.12 3.33 16 15 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 16 C -0.13 -2.28 5.57 30.68 0.17 -2.11 16 17 C -0.11 -1.59 6.09 30.65 0.19 -1.40 16 18 C 0.07 0.82 5.04 86.33 0.44 1.25 16 19 N -0.52 -9.02 4.70 -701.76 -3.30 -12.32 16 20 C 0.33 5.52 5.68 133.04 0.76 6.27 16 21 C -0.20 -1.60 8.73 22.50 0.20 -1.41 16 22 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 23 C -0.19 -1.71 10.08 22.43 0.23 -1.49 16 24 C 0.29 5.35 8.40 84.68 0.71 6.06 16 25 F -0.13 -2.67 17.29 44.97 0.78 -1.89 16 26 N -0.55 -12.54 10.41 -194.33 -2.02 -14.56 16 27 C 0.07 1.16 4.69 86.37 0.40 1.57 16 28 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 31 H 0.42 6.11 8.61 -92.71 -0.80 5.31 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.98 8.10 -2.38 -0.02 0.96 16 37 H 0.07 0.46 7.10 -2.39 -0.02 0.44 16 38 H 0.17 0.37 7.10 -2.91 -0.02 0.35 16 39 H 0.19 -0.67 8.06 -2.91 -0.02 -0.69 16 40 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 42 H 0.08 0.72 7.76 -2.39 -0.02 0.70 16 Total: -1.00 -81.80 366.46 0.24 -81.56 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.22 Total: 6.87 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.71 Total: 0.67 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -7.27 Total: -100.26 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.15 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -81.80 0.24 -81.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096168228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.986 kcal (2) G-P(sol) polarization free energy of solvation -81.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds